| scholarly article | Q13442814 |
| P2093 | author name string | Lois Pollack | |
| Suzette A Pabit | |||
| Andrea M Katz | |||
| Kathleen B Hall | |||
| Robb Welty | |||
| George D Calvey | |||
| P2860 | cites work | 2-Aminopurine fluorescence quenching and lifetimes: role of base stacking | Q24545577 |
| Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates | Q24632342 | ||
| Understanding nucleic acid-ion interactions | Q26822427 | ||
| A detailed view of a ribosomal active site: the structure of the L11-RNA complex | Q27618324 | ||
| A compact RNA tertiary structure contains a buried backbone-K+ complex | Q27639113 | ||
| Translational regulation via L11: molecular switches on the ribosome turned on and off by thiostrepton and micrococcin | Q27650303 | ||
| The Structure of the Ribosome with Elongation Factor G Trapped in the Posttranslocational State | Q27657797 | ||
| The Mechanism for Activation of GTP Hydrolysis on the Ribosome | Q27665613 | ||
| Cooperative interactions of RNA and thiostrepton antibiotic with two domains of ribosomal protein L11 | Q27732707 | ||
| RNA tertiary interactions mediate native collapse of a bacterial group I ribozyme | Q28276271 | ||
| From Levinthal to pathways to funnels | Q28300934 | ||
| Mg2+Shifts Ligand-Mediated Folding of a Riboswitch from Induced-Fit to Conformational Selection | Q29391512 | ||
| Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods | Q30051266 | ||
| Multiple folding pathways for the P4-P6 RNA domain | Q30306176 | ||
| Mixing injector enables time-resolved crystallography with high hit rate at X-ray free electron lasers. | Q30373881 | ||
| Laminar-flow fluid mixer for fast fluorescence kinetics studies | Q30868281 | ||
| Conformation and dynamics of abasic sites in DNA investigated by time-resolved fluorescence of 2-aminopurine | Q31914672 | ||
| The RNA-binding domain of ribosomal protein L11 recognizes an rRNA tertiary structure stabilized by both thiostrepton and magnesium ion | Q33620601 | ||
| On the role of magnesium ions in RNA stability | Q33638739 | ||
| Dissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding | Q33749946 | ||
| How RNA folds | Q33767912 | ||
| Association of an RNA kissing complex analyzed using 2-aminopurine fluorescence | Q33938829 | ||
| Multiple unfolding events during native folding of the Tetrahymena group I ribozyme | Q34001156 | ||
| Interaction of elongation factors EF-G and EF-Tu with a conserved loop in 23S RNA. | Q34039940 | ||
| Rapid compaction during RNA folding | Q34047327 | ||
| Multistage collapse of a bacterial ribozyme observed by time-resolved small-angle X-ray scattering | Q34054104 | ||
| The rate-limiting step in the folding of a large ribozyme without kinetic traps | Q34064701 | ||
| Dependence of RNA tertiary structural stability on Mg2+ concentration: interpretation of the Hill equation and coefficient | Q34401306 | ||
| Secondary structures of rRNAs from all three domains of life | Q35088620 | ||
| Importance of partially unfolded conformations for Mg(2+)-induced folding of RNA tertiary structure: structural models and free energies of Mg2+ interactions. | Q51907693 | ||
| Specific ammonium ion requirement for functional ribosomal RNA tertiary structure. | Q54648068 | ||
| Principles of RNA Compaction: Insights from the Equilibrium Folding Pathway of the P4-P6 RNA Domain in Monovalent Cations | Q56798149 | ||
| The Fastest Global Events in RNA Folding: Electrostatic Relaxation and Tertiary Collapse of the Tetrahymena Ribozyme | Q56798151 | ||
| Folding Mechanism of theTetrahymenaRibozyme P4−P6 Domain† | Q57260337 | ||
| RNA Folding at Millisecond Intervals by Synchrotron Hydroxyl Radical Footprinting | Q57260344 | ||
| Affinities and selectivities of divalent cation binding sites within an RNA tertiary structure | Q73876681 | ||
| Stabilization of RNA tertiary structure by monovalent cations | Q74240805 | ||
| The ribosomal stalk binds to translation factors IF2, EF-Tu, EF-G and RF3 via a conserved region of the L12 C-terminal domain | Q79311756 | ||
| Thermal methods for the analysis of RNA folding pathways | Q81131401 | ||
| The dynamic landscapes of RNA architecture | Q83393428 | ||
| Time resolved SAXS and RNA folding | Q83427366 | ||
| The dynamic nature of RNA as key to understanding riboswitch mechanisms | Q84375778 | ||
| Streamlined process for the chemical synthesis of RNA using 2'-O-thionocarbamate-protected nucleoside phosphoramidites in the solid phase | Q84397705 | ||
| The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks | Q84906984 | ||
| Fluorescence tools to investigate riboswitch structural dynamics | Q87957419 | ||
| Revealing the distinct folding phases of an RNA three-helix junction | Q88678015 | ||
| Folding of the hammerhead ribozyme: pyrrolo-cytosine fluorescence separates core folding from global folding and reveals a pH-dependent conformational change | Q35775781 | ||
| A compilation of large subunit (23S- and 23S-like) ribosomal RNA structures | Q35921252 | ||
| Cooperative tertiary interaction network guides RNA folding. | Q36062858 | ||
| Evidence for a thermodynamically distinct Mg2+ ion associated with formation of an RNA tertiary structure | Q36420588 | ||
| Conformational selection or induced fit? A critical appraisal of the kinetic mechanism | Q36548279 | ||
| Role of ion valence in the submillisecond collapse and folding of a small RNA domain | Q36697486 | ||
| RNA folding: thermodynamic and molecular descriptions of the roles of ions | Q37008231 | ||
| Conformational selection is a dominant mechanism of ligand binding | Q37217998 | ||
| Both helix topology and counterion distribution contribute to the more effective charge screening in dsRNA compared with dsDNA. | Q37259030 | ||
| Fast folding of an RNA tetraloop on a rugged energy landscape detected by a stacking-sensitive probe | Q37359455 | ||
| Detection of a key tertiary interaction in the highly conserved GTPase center of large subunit ribosomal RNA. | Q37551423 | ||
| Molecular crowders and cosolutes promote folding cooperativity of RNA under physiological ionic conditions | Q37581523 | ||
| Cations in charge: magnesium ions in RNA folding and catalysis | Q38010818 | ||
| Folding of RNA tertiary structure: Linkages between backbone phosphates, ions, and water | Q38097387 | ||
| Insights into RNA structure and function from genome-wide studies | Q38211391 | ||
| Conformational Rearrangements of Individual Nucleotides during RNA-Ligand Binding Are Rate-Differentiated | Q38293238 | ||
| Monovalent ion-mediated folding of the Tetrahymena thermophila ribozyme | Q38477381 | ||
| Complex RNA folding kinetics revealed by single-molecule FRET and hidden Markov models | Q38632683 | ||
| Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association | Q38847520 | ||
| Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: the roles of ion association or release, screening, and ion effects on water activity | Q39750512 | ||
| On the role of rRNA tertiary structure in recognition of ribosomal protein L11 and thiostrepton | Q40395637 | ||
| How do metal ions direct ribozyme folding? | Q40518196 | ||
| Protein recognition of a ribosomal RNA tertiary structure | Q40994681 | ||
| Ion-RNA interactions thermodynamic analysis of the effects of mono- and divalent ions on RNA conformational equilibria | Q41131875 | ||
| Long-range tertiary interactions in single hammerhead ribozymes bias motional sampling toward catalytically active conformations | Q41335361 | ||
| 2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update | Q41626997 | ||
| Mapping the ribosomal RNA neighborhood of protein L11 by directed hydroxyl radical probing | Q41671875 | ||
| Small angle X-ray scattering reveals a compact intermediate in RNA folding | Q41734989 | ||
| Dynamics of the IRE RNA hairpin loop probed by 2-aminopurine fluorescence and stochastic dynamics simulations | Q41965445 | ||
| Metal ion dependence of cooperative collapse transitions in RNA | Q42093680 | ||
| Formation of Tertiary Interactions during rRNA GTPase Center Folding | Q42104461 | ||
| BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis | Q42172438 | ||
| Bases defining an ammonium and magnesium ion-dependent tertiary structure within the large subunit ribosomal RNA. | Q42674820 | ||
| Nucleobases Undergo Dynamic Rearrangements during RNA Tertiary Folding | Q42837216 | ||
| Structural rearrangements linked to global folding pathways of the Azoarcus group I ribozyme | Q43167609 | ||
| Role of counterion condensation in folding of the Tetrahymena ribozyme. II. Counterion-dependence of folding kinetics | Q43699612 | ||
| Productive folding to the native state by a group II intron ribozyme | Q43850867 | ||
| Initiation factor IF2, thiostrepton and micrococcin prevent the binding of elongation factor G to the Escherichia coli ribosome | Q44019146 | ||
| Exploration of the transition state for tertiary structure formation between an RNA helix and a large structured RNA. | Q44428737 | ||
| The Early Folding Intermediates of the Tetrahymena Ribozyme are Kinetically Trapped. | Q45879155 | ||
| The tertiary structure of the hairpin ribozyme is formed through a slow conformational search | Q46393000 | ||
| Kinetics of allosteric conformational transition of a macromolecule prior to ligand binding: analysis of stopped-flow kinetic experiments | Q46461178 | ||
| Compaction of a bacterial group I ribozyme coincides with the assembly of core helices | Q47213156 | ||
| Induced Fit Is a Special Case of Conformational Selection. | Q47850055 | ||
| Effects of Mg2+, K+, and H+ on an equilibrium between alternative conformations of an RNA pseudoknot. | Q51538810 | ||
| P433 | issue | 12 | |
| P304 | page(s) | 1828-1838 | |
| P577 | publication date | 2018-09-25 | |
| P1433 | published in | RNA | Q7277164 |
| P1476 | title | Divalent ions tune the kinetics of a bacterial GTPase center rRNA folding transition from secondary to tertiary structure | |
| P478 | volume | 24 |
| Q90430397 | Macromolecular crowding effects on transcription and translation are regulated by free magnesium ion | cites work | P2860 |
Search more.