BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis

scientific article published on 5 September 2017

BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1107/S1600576717011438
P932PMC publication ID5627684
P698PubMed publication ID29021737

P50authorJesse B HopkinsQ57308197
P2093author name stringRichard E Gillilan
Soren Skou
P2860cites workInvestigating increasingly complex macromolecular systems with small-angle X-ray scatteringQ38284966
Emerging applications of small angle solution scattering in structural biologyQ38291388
The fast azimuthal integration Python library: pyFAI.Q38444518
ATSAS 2.8: a comprehensive data analysis suite for small-angle scattering from macromolecular solutionsQ38624857
Online ion-exchange chromatography for small-angle X-ray scatteringQ39316801
DAMMIF, a program for rapid ab-initio shape determination in small-angle scatteringQ39388340
Automated pipeline for purification, biophysical and x-ray analysis of biomacromolecular solutionsQ40883755
Correlation Map, a goodness-of-fit test for one-dimensional X-ray scattering spectraQ41105710
NADPH oxidase activator p67(phox) behaves in solution as a multidomain protein with semi-flexible linkersQ43282357
Liquid-chromatography-coupled SAXS for accurate sizing of aggregating proteinsQ47308531
Time resolved SAXS and RNA foldingQ83427366
Matplotlib: A 2D Graphics EnvironmentQ17278583
Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealingQ24537302
Versatile sample environments and automation for biological solution X-ray scattering experiments at the P12 beamline (PETRA III, DESY)Q28650940
New developments in the ATSAS program package for small-angle scattering data analysisQ29616858
Small-angle scattering for structural biology--expanding the frontier while avoiding the pitfalls.Q30385150
Synchrotron-based small-angle X-ray scattering of proteins in solutionQ30654818
Fibrinogen species as resolved by HPLC-SAXS data processing within the UltraScan Solution Modeler (US-SOMO) enhanced SAS moduleQ30702699
US-SOMO HPLC-SAXS module: dealing with capillary fouling and extraction of pure component patterns from poorly resolved SEC-SAXS data.Q30817870
GENFIT: software for the analysis of small-angle X-ray and neutron scattering data of macro-molecules in solution.Q30829396
A customizable software for fast reduction and analysis of large X-ray scattering data sets: applications of the new DPDAK package to small-angle X-ray scattering and grazing-incidence small-angle X-ray scatteringQ30858120
SASBDB, a repository for biological small-angle scattering data.Q30865124
Memprot: a program to model the detergent corona around a membrane protein based on SEC-SAXS dataQ30885747
Atomistic modelling of scattering data in the Collaborative Computational Project for Small Angle Scattering (CCP-SAS).Q31149216
Changes in biomolecular conformation seen by small angle X-ray scatteringQ34440498
Upgrade of MacCHESS facility for X-ray scattering of biological macromolecules in solutionQ34953255
Characterizing flexible and intrinsically unstructured biological macromolecules by SAS using the Porod-Debye law.Q35012139
Ambiguity assessment of small-angle scattering curves from monodisperse systems.Q35622941
DATASW, a tool for HPLC-SAXS data analysisQ35658236
Methods for analysis of size-exclusion chromatography-small-angle X-ray scattering and reconstruction of protein scatteringQ35754991
Analysis of X-ray and neutron scattering from biomacromolecular solutionsQ36917327
Domain Movements upon Activation of Phenylalanine Hydroxylase Characterized by Crystallography and Chromatography-Coupled Small-Angle X-ray ScatteringQ36977345
Accurate assessment of mass, models and resolution by small-angle scatteringQ37021738
FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural modeling of proteins and their complexes based on SAXS profilesQ37182134
The new NCPSS BL19U2 beamline at the SSRF for small-angle X-ray scattering from biological macromolecules in solution.Q37302610
NIST Standard Reference Material 3600: Absolute Intensity Calibration Standard for Small-Angle X-ray Scattering.Q37734687
Structural characterization of proteins and complexes using small-angle X-ray solution scattering.Q37766020
How random are intrinsically disordered proteins? A small angle scattering perspectiveQ37951586
Applications of small-angle X-ray scattering to biomacromolecular solutionsQ38059041
Small-angle X-ray scattering on biological macromolecules and nanocomposites in solutionQ38065284
Impact and progress in small and wide angle X-ray scattering (SAXS and WAXS).Q38120126
Everything SAXS: small-angle scattering pattern collection and correction.Q38132534
P433issuePt 5
P921main subjectX-ray scattering techniquesQ12073245
open-source softwareQ1130645
P304page(s)1545-1553
P577publication date2017-09-05
P1433published inJournal of Applied CrystallographyQ3186893
P1476titleBioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis
P478volume50

Reverse relations

cites work (P2860)
Q480953977-Phenoxy-Substituted 3,4-Dihydro-2H-1,2,4-benzothiadiazine 1,1-Dioxides as Positive Allosteric Modulators of α-Amino-3-hydroxy-5-methyl-4-isoxazolepropionic Acid (AMPA) Receptors with Nanomolar Potency
Q64107663A simple adaptation to a protein crystallography station to facilitate difference X-ray scattering studies
Q50043637An N-terminal Retention Module Anchors the Giant Adhesin LapA of Pseudomonas fluorescens at the Cell Surface: A Novel Sub-family of Type I Secretion Systems.
Q59790452Antibacterial isoamphipathic oligomers highlight the importance of multimeric lipid aggregation for antibacterial potency
Q47209962CHROMIXS: automatic and interactive analysis of chromatography-coupled small angle X-ray scattering data
Q55411254Cellular conditions of weakly chelated magnesium ions strongly promote RNA stability and catalysis.
Q92615106Cellulose ionic conductors with high differential thermal voltage for low-grade heat harvesting
Q64902169Convergent allostery in ribonucleotide reductase.
Q90281119DNA origami protection and molecular interfacing through engineered sequence-defined peptoids
Q91638525Direct observation of conformational dynamics of the PH domain in phospholipases Cϵ and β may contribute to subfamily-specific roles in regulation
Q57090704Direct shape determination of intermediates in evolving macromolecular solutions from small-angle scattering data
Q91735793Divalent ions tune the kinetics of a bacterial GTPase center rRNA folding transition from secondary to tertiary structure
Q47155273Extended low-resolution structure of a Leptospira antigen offers high bactericidal antibody accessibility amenable to vaccine design
Q57028812How the Conformations of an Internal Junction Contribute to Fold an RNA Domain
Q55317461Integrated beamline control and data acquisition for small-angle X-ray scattering at the P12 BioSAXS beamline at PETRAIII storage ring DESY.
Q113504986Machine Learning on a Robotic Platform for the Design of Polymer–Protein Hybrids
Q89590187Mechanism of sequence-based separation of single-stranded DNA in capillary zone electrophoresis
Q64267731Molecular Architecture of the Inositol Phosphatase Siw14
Q64110074Molecular architecture of the Jumonji C family histone demethylase KDM5B
Q90543488NELL2-Robo3 complex structure reveals mechanisms of receptor activation for axon guidance
Q91894791Physical methods for studying flavoprotein photoreceptors
Q89575004Probing remote residues important for catalysis in Escherichia coli ornithine transcarbamoylase
Q89531627Pseudomonas aeruginosa exoenzyme Y directly bundles actin filaments
Q92461837Quantitative Measure of the Size Dispersity in Ultrasmall Fluorescent Organic-Inorganic Hybrid Core-Shell Silica Nanoparticles by Small-angle X-ray Scattering
Q51556253Recent advances in the UltraScan SOlution MOdeller (US-SOMO) hydrodynamic and small-angle scattering data analysis and simulation suite.
Q90430537SASBDB: Towards an automatically curated and validated repository for biological scattering data
Q58106944SAXSMoW 2.0: Online calculator of the molecular weight of proteins in dilute solution from experimental SAXS data measured on a relative scale
Q59793784Size-exclusion chromatography small-angle X-ray scattering of water soluble proteins on a laboratory instrument
Q90331357Solution Ensemble of the C-Terminal Domain from the Transcription Factor Pdx1 Resembles an Excluded Volume Polymer
Q94549080Solution scattering at the Life Science X-ray Scattering (LiX) beamline
Q64248973Spermidine Synthase (SPDS) Undergoes Concerted Structural Rearrangements Upon Ligand Binding - A Case Study of the Two SPDS Isoforms From
Q64107069Structural Study of Agmatine Iminohydrolase From , the Second Enzyme of the Agmatine Route of Putrescine Biosynthesis in Plants
Q83230233Structural basis for AcrVA4 inhibition of specific CRISPR-Cas12a
Q90150506Structural insights into conformational switching in latency-associated peptide between transforming growth factor β-1 bound and unbound states
Q98177110Structural signatures in EPR3 define a unique class of plant carbohydrate receptors
Q91841126Structural underpinnings of Ric8A function as a G-protein α-subunit chaperone and guanine-nucleotide exchange factor
Q98471339Structure of phospholipase Cε reveals an integrated RA1 domain and previously unidentified regulatory elements
Q89900287Structure of the G protein chaperone and guanine nucleotide exchange factor Ric-8A bound to Gαi1
Q57805452Structure-guided disruption of the pseudopilus tip complex inhibits the Type II secretion in Pseudomonas aeruginosa
Q52361367The C-terminal tail of the NEIL1 DNA glycosylase interacts with the human mitochondrial single-stranded DNA binding protein.
Q57710260The consequences of cavity creation on the folding landscape of a repeat protein depend upon context
Q59353544The dynamic nature of the conserved tegument protein UL37 of herpesviruses
Q89828444The hTERT core promoter forms three parallel G-quadruplexes
Q90212539The internal interaction in RBBP5 regulates assembly and activity of MLL1 methyltransferase complex
Q89865743The structural basis of fungal glucuronoyl esterase activity on natural substrates
Q58799600Two-photon-induced stretchable graphene supercapacitors
Q89582045Valence and patterning of aromatic residues determine the phase behavior of prion-like domains

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