Biodegradation of Tetralin: Genomics, Gene Function and Regulation

scientific article published on 06 May 2019

Biodegradation of Tetralin: Genomics, Gene Function and Regulation is …
instance of (P31):
scholarly articleQ13442814
review articleQ7318358

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P356DOI10.3390/GENES10050339
P932PMC publication ID6563040
P698PubMed publication ID31064110

P50authorBelén FlorianoQ59662100
Eduardo SanteroQ38801440
Francisca Reyes-RamírezQ42575546
P2860cites workSuhB, a small non-coding RNA involved in catabolite repression of tetralin degradation genes in Sphingopyxis granuli strain TFAQ61658127
The Induction of the Enzymes of Naphthalene Metabolism in Pseudomonads by Salicylate and 2-AminobenzoateQ66959265
Transcriptional activation of the catechol and chlorocatechol operons: variations on a themeQ77702945
Involvement of poly(3-hydroxybutyrate) synthesis in catabolite repression of tetralin biodegradation genes in Sphingomonas macrogolitabida strain TFAQ86942611
Purification and characterization of carbazole 1,9a-dioxygenase, a three-component dioxygenase system of Pseudomonas resinovorans strain CA10Q24537314
Bacterial 2,4-dioxygenases: new members of the alpha/beta hydrolase-fold superfamily of enzymes functionally related to serine hydrolasesQ24549146
Purification and characterization of a 1,2-dihydroxynaphthalene dioxygenase from a bacterium that degrades naphthalenesulfonic acidsQ24676866
A cluster exposed: structure of the Rieske ferredoxin from biphenyl dioxygenase and the redox properties of Rieske Fe-S proteinsQ27629759
Bacterial small RNA regulators: versatile roles and rapidly evolving variationsQ27692531
Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenaseQ27759020
Current State of Knowledge in Microbial Degradation of Polycyclic Aromatic Hydrocarbons (PAHs): A ReviewQ28079210
Purification and characterization of an oxygenase component in benzoate 1,2-dioxygenase system from Pseudomonas arvilla C-1Q28282310
Molecular biology of the LysR family of transcriptional regulatorsQ29615198
Atomic structure of ferredoxin-NADP+ reductase: prototype for a structurally novel flavoenzyme familyQ30195728
Degradative plasmids from sphingomonadsQ31141600
The electron-transport proteins of hydroxylating bacterial dioxygenasesQ34262625
Involvement of a putative cyclic amp receptor protein (CRP)-like binding sequence and a CRP-like protein in glucose-mediated catabolite repression of thn genes in Rhodococcus sp. strain TFB.Q34283669
Structure and mechanism of the iron‐sulfur flavoprotein phthalate dioxygenase reductaseQ34297906
The ferredoxin ThnA3 negatively regulates tetralin biodegradation gene expression via ThnY, a ferredoxin reductase that functions as a regulator of the catabolic pathwayQ34998907
Identification of an alternative 2,3-dihydroxybiphenyl 1,2-dioxygenase in Rhodococcus sp. strain RHA1 and cloning of the geneQ35192654
Integrated regulation in response to aromatic compounds: from signal sensing to attractive behaviourQ35594592
Evolutionary relationships among extradiol dioxygenasesQ35614251
Design of gene circuits: lessons from bacteriaQ35621367
Aldehyde dehydrogenases and their role in carcinogenesisQ35815650
Bacterial transcriptional regulators for degradation pathways of aromatic compoundsQ35880920
Genomic analysis of the nitrate-respiring Sphingopyxis granuli (formerly Sphingomonas macrogoltabida) strain TFA.Q35915195
Functional Metagenomics of a Biostimulated Petroleum-Contaminated Soil Reveals an Extraordinary Diversity of Extradiol Dioxygenases.Q35929020
Hfq: the flexible RNA matchmakerQ35933178
Roles of CatR and cis,cis-muconate in activation of the catBC operon, which is involved in benzoate degradation in Pseudomonas putidaQ36136904
Purification and properties of ferredoxinNAP, a component of naphthalene dioxygenase from Pseudomonas sp. strain NCIB 9816.Q36157509
Microbial aldolases as C-C bonding enzymes--unknown treasures and new developmentsQ36449262
Mechanism of extradiol aromatic ring-cleaving dioxygenasesQ37039723
Integrative and Conjugative Elements (ICEs): What They Do and How They WorkQ37529766
Degradation of alkanes by bacteria.Q37609490
Carbon catabolite repression in Pseudomonas : optimizing metabolic versatility and interactions with the environment.Q37735901
Microbial degradation of aromatic compounds - from one strategy to fourQ37941366
The role of RNases in the regulation of small RNAsQ38202443
Fe-S proteins that regulate gene expressionQ38275779
Small RNAs in bacteria and archaea: who they are, what they do, and how they do it.Q38571330
Genetic analysis of biodegradation of tetralin by a Sphingomonas strain.Q39481438
Identification of an extradiol dioxygenase involved in tetralin biodegradation: gene sequence analysis and purification and characterization of the gene productQ39498860
Identification of a serine hydrolase which cleaves the alicyclic ring of tetralin.Q39585764
Identification of a hydratase and a class II aldolase involved in biodegradation of the organic solvent tetralinQ39648820
Redox proteins of hydroxylating bacterial dioxygenases establish a regulatory cascade that prevents gratuitous induction of tetralin biodegradation genes.Q39711122
Identification and functional characterization of Sphingomonas macrogolitabida strain TFA genes involved in the first two steps of the tetralin catabolic pathwayQ39734838
Metabolism of tetralin (1,2,3,4-tetrahydronaphthalene) in Corynebacterium sp. strain C125.Q39917524
Effects of the membrane action of tetralin on the functional and structural properties of artificial and bacterial membranesQ39934013
Regulation of tetralin biodegradation and identification of genes essential for expression of thn operons.Q39964610
Mechanisms of membrane toxicity of hydrocarbonsQ40056106
Genetic dissection of independent and cooperative transcriptional activation by the LysR-type activator ThnR at close divergent promotersQ40271635
Molecular and biochemical characterization of the tetralin degradation pathway in Rhodococcus sp. strain TFBQ41859187
Combination of degradation pathways for naphthalene utilization in Rhodococcus sp. strain TFB.Q41962933
ThnY is a ferredoxin reductase-like iron-sulfur flavoprotein that has evolved to function as a regulator of tetralin biodegradation gene expressionQ42575479
Integrated response to inducers by communication between a catabolic pathway and its regulatory systemQ42621272
Tetralin-induced and ThnR-regulated aldehyde dehydrogenase and beta-oxidation genes in Sphingomonas macrogolitabida strain TFA.Q42946893
Co-ordinated regulation of two divergent promoters through higher-order complex formation by the LysR-type regulator ThnR.Q43291699
Site-directed mutagenesis of an extradiol dioxygenase involved in tetralin biodegradation identifies residues important for activity or substrate specificityQ44460246
Cloning and nucleotide sequence of the 2,3-dihydroxybiphenyl dioxygenase gene from the PCB-degrading strain of Pseudomonas paucimobilis Q1.Q45298493
P275copyright licenseCreative Commons AttributionQ6905323
P6216copyright statuscopyrightedQ50423863
P433issue5
P921main subjectgenomicsQ222046
biodegradationQ696715
P577publication date2019-05-06
P1433published inGenesQ5532699
P1476titleBiodegradation of Tetralin: Genomics, Gene Function and Regulation
P478volume10

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cites work (P2860)
Q104064529Identification of two fnr genes and characterisation of their role in the anaerobic switch in Sphingopyxis granuli strain TFA
Q90546773Two paralogous EcfG σ factors hierarchically orchestrate the activation of the General Stress Response in Sphingopyxis granuli TFA
Q95839962Understanding the metabolism of the tetralin degrader Sphingopyxis granuli strain TFA through genome-scale metabolic modelling

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