Evolutionary conservation of the intrinsic disorder-based Radical-Induced Cell Death1 hub interactome

scientific article published on 12 December 2019

Evolutionary conservation of the intrinsic disorder-based Radical-Induced Cell Death1 hub interactome is …
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scholarly articleQ13442814

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P356DOI10.1038/S41598-019-55385-3
P932PMC publication ID6908617
P698PubMed publication ID31831797

P50authorBirthe B. KragelundQ37830831
Lasse StabyQ88364136
P2093author name stringKaren Skriver
Charlotte O'Shea
Katrine Bugge
Lise Friis Christensen
P2860cites workPrediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of LifeQ22061741
SMART, a simple modular architecture research tool: identification of signaling domainsQ24597380
Jalview Version 2--a multiple sequence alignment editor and analysis workbenchQ24655519
ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteinsQ24680253
Basic local alignment search toolQ25938991
Short linear motifs - ex nihilo evolution of protein regulationQ26863643
Conserved Themes in Target Recognition by the PAH1 and PAH2 Domains of the Sin3 Transcriptional CorepressorQ27649358
The Acidic Transcription Activator Gcn4 Binds the Mediator Subunit Gal11/Med15 Using a Simple Protein Interface Forming a Fuzzy ComplexQ27676397
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal OmegaQ27860809
Cyclin is degraded by the ubiquitin pathwayQ28131704
Intrinsically disordered proteinQ28191444
Intrinsic disorder in cell-signaling and cancer-associated proteinsQ28207698
Identification of a structural motif that confers specific interaction with the WD40 repeat domain of Arabidopsis COP1.Q28354268
The eukaryotic linear motif resource ELM: 10 years and countingQ28660725
Intrinsically unstructured proteinsQ29614784
Why are "natively unfolded" proteins unstructured under physiologic conditions?Q29615739
Intrinsically unstructured proteins: re-assessing the protein structure-function paradigmQ29615865
Intrinsic disorder and protein functionQ29616415
Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolutionQ29616847
Alpha-alpha linking motifs and interhelical orientations.Q30351250
Protein expansion is primarily due to indels in intrinsically disordered regions.Q30353647
The I-TASSER Suite: protein structure and function prediction.Q30370293
Comparing models of evolution for ordered and disordered proteins.Q30382652
The RST and PARP-like domain containing SRO protein family: analysis of protein structure, function and conservation in land plants.Q30386626
PLAZA 3.0: an access point for plant comparative genomicsQ30861987
Genome-wide expression analysis offers new insights into the origin and evolution of Physcomitrella patens stress responseQ31029117
The Arabidopsis thaliana NAC transcription factor family: structure-function relationships and determinants of ANAC019 stress signallingQ33348305
Protein intrinsic disorder in Arabidopsis NAC transcription factors: transcriptional activation by ANAC013 and ANAC046 and their interactions with RCD1.Q33359335
MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteinsQ34280717
What does it mean to be natively unfolded?Q34488954
pico-PLAZA, a genome database of microbial photosynthetic eukaryotesQ34798602
Origins of Myc proteins--using intrinsic protein disorder to trace distant relativesQ35005363
A special member of the rice SRO family, OsSRO1c, mediates responses to multiple abiotic stresses through interaction with various transcription factors.Q35066742
Transcriptomics and functional genomics of ROS-induced cell death regulation by RADICAL-INDUCED CELL DEATH1.Q35097137
Dual function of an Arabidopsis transcription factor DREB2A in water-stress-responsive and heat-stress-responsive gene expressionQ35214806
Senescence-associated barley NAC (NAM, ATAF1,2, CUC) transcription factor interacts with radical-induced cell death 1 through a disordered regulatory domainQ35372249
Intrinsically disordered proteins in cellular signalling and regulation.Q35510300
The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice.Q36523806
Intrinsic disorder in transcription factorsQ36882145
Intrinsically disordered regions of p53 family are highly diversified in evolutionQ37528149
Order by disorder in plant signalingQ38028163
Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation.Q38220014
HvDRF1 is involved in abscisic acid-mediated gene regulation in barley and produces two forms of AP2 transcriptional activators, interacting preferably with a CT-rich elementQ38345807
SLiMSearch: a framework for proteome-wide discovery and annotation of functional modules in intrinsically disordered regionsQ38434980
Eukaryotic transcription factors: paradigms of protein intrinsic disorderQ38658522
ETV4 and AP1 Transcription Factors Form Multivalent Interactions with three Sites on the MED25 Activator-Interacting DomainQ38696706
The transcription factor interacting protein RCD1 contains a novel conserved domainQ39536107
RCD1-DREB2A interaction in leaf senescence and stress responses in Arabidopsis thalianaQ39545489
CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding siteQ41489469
Subgroup-specific intrinsic disorder profiles of Arabidopsis NAC transcription factors: Identification of functional hotspotsQ41969230
Hypersensitive termination of the hypoxic response by a disordered protein switchQ42293183
Dissecting plant genomes with the PLAZA comparative genomics platformQ45094649
Coupled folding and binding with alpha-helix-forming molecular recognition elementsQ48122045
1H, 13C and 15N NMR chemical shift assignments of A. thaliana RCD1 RST.Q48309147
Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.Q51306890
The paralogous genes RADICAL-INDUCED CELL DEATH1 and SIMILAR TO RCD ONE1 have partially redundant functions during Arabidopsis developmentQ51929863
Unequally redundant RCD1 and SRO1 mediate stress and developmental responses and interact with transcription factorsQ51932027
Analysis of the effect of local interactions on protein stabilityQ52315111
Structure of Radical-Induced Cell Death1 Hub Domain Reveals a Common αα-Scaffold for Disorder in Transcriptional Networks.Q52320977
The hydrophobic-staple motif and a role for loop-residues in α-helix stability and protein foldingQ52342671
Gcn4-Mediator Specificity Is Mediated by a Large and Dynamic Fuzzy Protein-Protein ComplexQ52347700
Extreme disorder in an ultrahigh-affinity protein complex.Q52375447
The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins.Q52974739
High-throughput discovery of functional disordered regions: investigation of transactivation domains.Q54940954
'Nonlinear' Biochemistry of Nucleosome DetergentsQ57297769
Arabidopsis downy mildew effector HaRxL106 suppresses plant immunity by binding to RADICAL-INDUCED CELL DEATH1Q57448556
Structure and dynamics conspire in the evolution of affinity between intrinsically disordered proteinsQ58569521
NAC Transcription Factors ANAC087 and ANAC046 Control Distinct Aspects of Programmed Cell Death in the Arabidopsis Columella and Lateral Root CapQ58788672
Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulationQ64111661
Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factorsQ64262484
Orderly order in protein intrinsic disorder distribution: disorder in 3500 proteomes from viruses and the three domains of lifeQ84387398
The Nuanced Interplay of Intrinsic Disorder and Other Structural Properties Driving Protein EvolutionQ89218506
P433issue1
P407language of work or nameEnglishQ1860
P304page(s)18927
P577publication date2019-12-12
P1433published inScientific ReportsQ2261792
P1476titleEvolutionary conservation of the intrinsic disorder-based Radical-Induced Cell Death1 hub interactome
P478volume9

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Q96954791Interactions by Disorder - A Matter of Contextcites workP2860

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