| scholarly article | Q13442814 |
| P50 | author | Harley McAdams | Q87780956 |
| Adam Arkin | Q37371935 | ||
| P2093 | author name string | J Ross | |
| John Ross | |||
| H H McAdams | |||
| A Arkin | |||
| P2860 | cites work | Common themes in microbial pathogenicity revisited | Q24643808 |
| THE GROWTH OF BACTERIOPHAGE | Q24676354 | ||
| Checkpoints: controls that ensure the order of cell cycle events | Q28131705 | ||
| Transcriptional activation by recruitment | Q29615048 | ||
| Stochastic mechanisms in gene expression | Q29617407 | ||
| rRNA transcription rate in Escherichia coli | Q30442384 | ||
| NusA protein is necessary and sufficient in vitro for phage lambda N gene product to suppress a rho-independent terminator placed downstream of nutL. | Q33566502 | ||
| Cleavage of the cII protein of phage lambda by purified HflA protease: control of the switch between lysis and lysogeny | Q33659038 | ||
| Promoter occlusion: Transcription through a promoter may inhibit its activity | Q34250774 | ||
| Control of bacteriophage lambda CII activity by bacteriophage and host functions | Q34255875 | ||
| Self-assembly of bacteriophage lambda cI repressor: effects of single-site mutations on the monomer-dimer equilibrium | Q34330227 | ||
| Proteolysis of the phage lambda CII regulatory protein by FtsH (HflB) of Escherichia coli. | Q34432136 | ||
| Degradation of sigma 32, the heat shock regulator in Escherichia coli, is governed by HflB. | Q34450730 | ||
| Establishment of repression by lambdoid phage in catabolite activator protein and adenylate cyclase mutants of Escherichia coli | Q34687813 | ||
| DNA inversions in phages and bacteria | Q35238422 | ||
| The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation | Q67280366 | ||
| Gene regulation at the right operator (OR) bacteriophage lambda. I. OR3 and autogenous negative control by repressor | Q70531433 | ||
| Regulation of the pR operon of bacteriophage lambda | Q72782475 | ||
| How the phage lambda N gene product suppresses transcription termination: communication of RNA polymerase with regulatory proteins mediated by signals in nascent RNA | Q35384285 | ||
| Interaction between bacteriophage lambda and its Escherichia coli host | Q35568728 | ||
| Regulation by proteolysis: energy-dependent proteases and their targets | Q35655403 | ||
| Control of transcription processivity in phage lambda: Nus factors strengthen the termination-resistant state of RNA polymerase induced by N antiterminator | Q35739925 | ||
| Genetic analysis of the cIII gene of bacteriophage HK022 | Q36125780 | ||
| Membrane localization of the HflA regulatory protease of Escherichia coli by immunoelectron microscopy | Q36155688 | ||
| Pilin-gene phase variation of Moraxella bovis is caused by an inversion of the pilin genes | Q36207292 | ||
| Identification of polypeptides encoded by an Escherichia coli locus (hflA) that governs the lysis-lysogeny decision of bacteriophage lambda | Q36264543 | ||
| Coordination of flagella on filamentous cells of Escherichia coli | Q36331269 | ||
| Rate-limiting steps in RNA chain initiation | Q36408551 | ||
| Cell growth and lambda phage development controlled by the same essential Escherichia coli gene, ftsH/hflB. | Q36676645 | ||
| The Escherichia coli hflA locus encodes a putative GTP-binding protein and two membrane proteins, one of which contains a protease-like domain | Q36676782 | ||
| The roles of the lambda c3 gene and the Escherichia coli catabolite gene activation system in the establishment of lysogeny by bacteriophage lambda | Q37434189 | ||
| Control of lambda repressor synthesis | Q37486751 | ||
| The activity of the CIII regulator of lambdoid bacteriophages resides within a 24-amino acid protein domain | Q37532062 | ||
| Kinetic analysis of mutations affecting the cII activation site at the PRE promoter of bacteriophage lambda | Q37573473 | ||
| Interdependence of translation, transcription and mRNA degradation in the lacZ gene | Q38326860 | ||
| Cellular levels of the prophage λ and 434 repressors | Q39902691 | ||
| The RNA chain elongation rate in Escherichia coli depends on the growth rate | Q39931855 | ||
| The lysis-lysogeny decision of phage lambda: explicit programming and responsiveness | Q40218190 | ||
| Does replication-induced transcription regulate synthesis of the myriad low copy number proteins of Escherichia coli? | Q40925845 | ||
| DNA damage and cell cycle checkpoints | Q40993748 | ||
| Generation time statistics of Escherichia coli B measured by synchronous culture techniques | Q41158569 | ||
| Transcription and translation initiation frequencies of the Escherichia coli lac operon | Q41318178 | ||
| Microbial pathogenesis: genomics and beyond | Q41441527 | ||
| Integration host factor stimulates the phage lambda pL promoter | Q42630876 | ||
| NusG, a new Escherichia coli elongation factor involved in transcriptional antitermination by the N protein of phage lambda | Q43836899 | ||
| Theoretical and experimental analysis of the phage lambda genetic switch implies missing levels of co-operativity | Q43840701 | ||
| Gene regulation at the right operator (OR) of bacteriophage lambda. III. lambda repressor directly activates gene transcription | Q43920534 | ||
| Assembly of transcription elongation complexes containing the N protein of phage lambda and the Escherichia coli elongation factors NusA, NusB, NusG, and S10 | Q44477196 | ||
| Gene regulation at the right operator (OR) of bacteriophage lambda. II. OR1, OR2, and OR3: their roles in mediating the effects of repressor and cro. | Q45230674 | ||
| A class of Escherichia coli proteins controlled by the hflA locus. | Q46065893 | ||
| The spindle-assembly checkpoint: aiming for a perfect mitosis, every time | Q46855330 | ||
| Antitermination and termination functions of the cloned nutL, N and tL1 modules of coliphage lambda | Q48407362 | ||
| Circuit simulation of genetic networks. | Q52206654 | ||
| Control of phage λ development by stability and synthesis of cll protein: Role of the viral clll and host hflA, himA and himD genes | Q52285352 | ||
| Differential effects of mutations on discrete steps in transcription initiation at the λ PRE promoter | Q52701942 | ||
| Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate. | Q54688749 | ||
| hflB, a new Escherichia coli locus regulating lysogeny and the level of bacteriophage lambda cII protein. | Q54785058 | ||
| P433 | issue | 4 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Escherichia coli | Q25419 |
| P304 | page(s) | 1633-1648 | |
| 1633-48 | |||
| P577 | publication date | 1998-08-01 | |
| P1433 | published in | Genetics | Q3100575 |
| P1476 | title | Stochastic Kinetic Analysis of Developmental Pathway Bifurcation in Phage λ-Infected Escherichia coli Cells | |
| Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells | |||
| P478 | volume | 149 |
| Q98169950 | A computational model of stem cell molecular mechanism to maintain tissue homeostasis |
| Q41554651 | A framework for scalable parameter estimation of gene circuit models using structural information. |
| Q36922006 | A genetic timer through noise-induced stabilization of an unstable state. |
| Q28732701 | A genome-wide analysis of promoter-mediated phenotypic noise in Escherichia coli |
| Q39706090 | A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast. |
| Q35400385 | A hardwired HIV latency program |
| Q33430026 | A mathematical model for the detection mechanism of DNA double-strand breaks depending on autophosphorylation of ATM. |
| Q52363634 | A method for estimating Hill function-based dynamic models of gene regulatory networks. |
| Q25256640 | A microarray data-based semi-kinetic method for predicting quantitative dynamics of genetic networks |
| Q35794588 | A molecular model for intercellular synchronization in the mammalian circadian clock |
| Q36141812 | A new mechanism of stem cell differentiation through slow binding/unbinding of regulators to genes |
| Q40277094 | A nonlinear discrete dynamical model for transcriptional regulation: construction and properties |
| Q34151833 | A quantitative model of glucose signaling in yeast reveals an incoherent feed forward loop leading to a specific, transient pulse of transcription |
| Q28646701 | A quantitative model of human DNA base excision repair. I. Mechanistic insights |
| Q42119807 | A quantitative study of lambda-phage SWITCH and its components |
| Q35568935 | A stochastic model of Escherichia coli AI-2 quorum signal circuit reveals alternative synthesis pathways |
| Q48450774 | A stochastic signaling network mediates the probabilistic induction of cerebellar long-term depression. |
| Q41821986 | A stochastic single-molecule event triggers phenotype switching of a bacterial cell |
| Q37362004 | A stochastic version of corticosteriod pharmacogenomic model |
| Q33476550 | A systematic design method for robust synthetic biology to satisfy design specifications |
| Q34618961 | A theoretical model for the regulation of Sex-lethal, a gene that controls sex determination and dosage compensation in Drosophila melanogaster |
| Q28821892 | ACCURATE CHEMICAL MASTER EQUATION SOLUTION USING MULTI-FINITE BUFFERS |
| Q41240622 | Acceleration of discrete stochastic biochemical simulation using GPGPU. |
| Q35675741 | Active Degradation Explains the Distribution of Nuclear Proteins during Cellular Senescence |
| Q41403276 | Adaptive deployment of model reductions for tau-leaping simulation |
| Q37048812 | Adaptively biased sequential importance sampling for rare events in reaction networks with comparison to exact solutions from finite buffer dCME method |
| Q28478888 | Adjusting phenotypes by noise control |
| Q36951227 | Algorithms and software for stochastic simulation of biochemical reacting systems |
| Q38253838 | Alternative splicing variability: exactly how similar are two identical cells? |
| Q98154435 | An analog to digital converter controls bistable transfer competence of a widespread integrative and conjugative element |
| Q34430304 | An ensemble method for identifying regulatory circuits with special reference to the qa gene cluster of Neurospora crassa. |
| Q35807225 | An evolutionary role for HIV latency in enhancing viral transmission |
| Q34182212 | An integrated model of epidermal growth factor receptor trafficking and signal transduction |
| Q33947540 | An integrative model of the cardiac ventricular myocyte incorporating local control of Ca2+ release. |
| Q51806327 | Analysis of Noise in Quorum Sensing |
| Q89820798 | Analysis of Single-Cell Gene Pair Coexpression Landscapes by Stochastic Kinetic Modeling Reveals Gene-Pair Interactions in Development |
| Q35998101 | Analyzing the biology on the system level |
| Q37577580 | Approaches to biosimulation of cellular processes |
| Q42535382 | Architecture-dependent robustness and bistability in a class of genetic circuits. |
| Q37583216 | Bacteriophage P1 in retrospect and in prospect |
| Q28732687 | Bayesian parameter inference for stochastic biochemical network models using particle Markov chain Monte Carlo |
| Q34452389 | Bifurcation and singularity analysis of a molecular network for the induction of long-term memory |
| Q33340290 | Bimodal and hysteretic expression in mammalian cells from a synthetic gene circuit |
| Q24798814 | Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks |
| Q43184711 | Biochemical simulations: stochastic, approximate stochastic and hybrid approaches. |
| Q36018197 | Biological Sources of Intrinsic and Extrinsic Noise in cI Expression of Lysogenic Phage Lambda |
| Q28475758 | Biological switches and clocks |
| Q42683279 | Bistability in myo-inositol utilization by Salmonella enterica serovar Typhimurium. |
| Q34984026 | Bistable responses in bacterial genetic networks: designs and dynamical consequences |
| Q40542435 | Boolean network model for GPR142 against Type 2 diabetes and relative dynamic change ratio analysis using systems and biological circuits approach |
| Q36437062 | Bottom-up construction of in vitro switchable memories. |
| Q35533119 | Breaking an epigenetic chromatin switch: curious features of hysteresis in Saccharomyces cerevisiae telomeric silencing |
| Q38558798 | Bursting noise in gene expression dynamics: linking microscopic and mesoscopic models. |
| Q33339611 | Calculating biological behaviors of epigenetic states in the phage lambda life cycle |
| Q28474898 | Canalization of gene expression and domain shifts in the Drosophila blastoderm by dynamical attractors |
| Q33483646 | Cascading signaling pathways improve the fidelity of a stochastically and deterministically simulated molecular RS latch |
| Q42706077 | Cell Simulation for Circadian Rhythm Based on Michaelis-MentenModel |
| Q33899275 | Cell-to-cell diversity in protein levels of a gene driven by a tetracycline inducible promoter |
| Q34746711 | Cellular decision making and biological noise: from microbes to mammals |
| Q38851972 | Challenges in structural approaches to cell modeling |
| Q28485200 | Chemical memory reactions induced bursting dynamics in gene expression |
| Q34659327 | Chromosome-specific and noisy IFNB1 transcription in individual virus-infected human primary dendritic cells |
| Q42009820 | Classical versus stochastic kinetics modeling of biochemical reaction systems |
| Q36856473 | Collective decision making in bacterial viruses |
| Q36713989 | Colored extrinsic fluctuations and stochastic gene expression |
| Q28830097 | Comparison of Parameter Estimation Methods in Stochastic Chemical Kinetic Models: Examples in Systems Biology |
| Q34374166 | Comparison of deterministic and stochastic models of the lac operon genetic network |
| Q41385512 | Comparison of finite difference based methods to obtain sensitivities of stochastic chemical kinetic models. |
| Q38377105 | Comparison of gene regulatory networks via steady-state trajectories |
| Q28477488 | Computation of steady-state probability distributions in stochastic models of cellular networks |
| Q36974531 | Computation, prediction, and experimental tests of fitness for bacteriophage T7 mutants with permuted genomes |
| Q33836147 | Computational Cellular Dynamics Based on the Chemical Master Equation: A Challenge for Understanding Complexity |
| Q34371218 | Computational approaches for modeling regulatory cellular networks |
| Q34586500 | Computational cell biology in the post-genomic era. |
| Q24614636 | Computational limits to binary genes. |
| Q36524173 | Computational model for autophagic vesicle dynamics in single cells |
| Q28475512 | Computational models of the Notch network elucidate mechanisms of context-dependent signaling |
| Q36745877 | Conceptualizing a tool to optimize therapy based on dynamic heterogeneity |
| Q42322982 | Consequences of mRNA transport on stochastic variability in protein levels. |
| Q33398516 | Control of stochastic gene expression by host factors at the HIV promoter |
| Q29615955 | Control of stochasticity in eukaryotic gene expression |
| Q40553793 | Cooperativity in long-range gene regulation by the lambda CI repressor. |
| Q34233029 | Correlation analysis of liver tumor-associated genes with liver regeneration |
| Q91625805 | Coupling of DNA Replication and Negative Feedback Controls Gene Expression for Cell-Fate Decisions |
| Q37202063 | DNA looping provides stability and robustness to the bacteriophage lambda switch |
| Q42100326 | DNA-Binding Kinetics Determines the Mechanism of Noise-Induced Switching in Gene Networks |
| Q30494599 | Decision making at a subcellular level determines the outcome of bacteriophage infection |
| Q37872304 | Decision making in living cells: lessons from a simple system |
| Q24534752 | Delay-induced stochastic oscillations in gene regulation |
| Q37284611 | Design of a directed molecular network |
| Q51646357 | Design of regulation and dynamics in simple biochemical pathways. |
| Q42964811 | Designing experiments to understand the variability in biochemical reaction networks |
| Q36870993 | Designing sequential transcription logic: a simple genetic circuit for conditional memory |
| Q24644275 | Determination of cell fate selection during phage lambda infection |
| Q38746502 | Determining the Limitations and Benefits of Noise in Gene Regulation and Signal Transduction through Single Cell, Microscopy-Based Analysis |
| Q30491733 | Determinism and divergence of apoptosis susceptibility in mammalian cells |
| Q42709780 | Deterministic versus stochastic models for circadian rhythms. |
| Q36382662 | Discrete stochastic simulation methods for chemically reacting systems |
| Q42706152 | Dissecting the stochastic transcription initiation process in live Escherichia coli. |
| Q34795388 | Dual delayed feedback provides sensitivity and robustness to the NF-κB signaling module |
| Q42624814 | Dynamics of transcription driven by the tetA promoter, one event at a time, in live Escherichia coli cells |
| Q24538891 | Effects of Escherichia coli physiology on growth of phage T7 in vivo and in silico |
| Q44462601 | Effects of cell cycle noise on excitable gene circuits |
| Q33543167 | Effects of transcriptional pausing on gene expression dynamics |
| Q36240474 | Efficient Switches in Biology and Computer Science |
| Q94158674 | Efficient finite-difference method for computing sensitivities of biochemical reactions |
| Q35189988 | Efficient simulation of stochastic chemical kinetics with the Stochastic Bulirsch-Stoer extrapolation method. |
| Q41898830 | Efficient stochastic simulation of chemical kinetics networks using a weighted ensemble of trajectories |
| Q21145326 | Emergence of switch-like behavior in a large family of simple biochemical networks |
| Q33554618 | Engineering of a synthetic quadrastable gene network to approach Waddington landscape and cell fate determination. |
| Q43194801 | Engineering stochasticity in gene expression |
| Q55022765 | Ensemble methods for stochastic networks with special reference to the biological clock of Neurospora crassa. |
| Q33245158 | Epigenetic acquisition of inducibility of type III cytotoxicity in P. aeruginosa |
| Q34712052 | Epigenetic chromatin silencing: bistability and front propagation |
| Q37341080 | Equation-based models of dynamic biological systems. |
| Q94679778 | Evidence for rate-dependent filtering of global extrinsic noise by biochemical reactions in mammalian cells |
| Q28483276 | Exploring the contextual sensitivity of factors that determine cell-to-cell variability in receptor-mediated apoptosis |
| Q33866464 | Expression pattern and action analysis of genes associated with the responses to chemical stimuli during rat liver regeneration |
| Q33866318 | Expression patterns and action analysis of genes associated with blood coagulation responses during rat liver regeneration |
| Q33865854 | Expression patterns and action analysis of genes associated with drug-induced liver diseases during rat liver regeneration |
| Q33868736 | Expression patterns and action analysis of genes associated with hepatitis virus infection during rat liver regeneration |
| Q33787586 | Expression patterns and action analysis of genes associated with inflammatory responses during rat liver regeneration |
| Q33866749 | Expression patterns and action analysis of genes associated with physiological responses during rat liver regeneration: Innate immune response |
| Q33866931 | Expression patterns and action analysis of genes associated with physiological responses during rat liver regeneration: cellular immune response |
| Q33979046 | Factors influencing lysis time stochasticity in bacteriophage λ. |
| Q34506734 | Fan-out in gene regulatory networks. |
| Q40086009 | Fate-Regulating Circuits in Viruses: From Discovery to New Therapy Targets |
| Q30789434 | Feedback regulation in the lactose operon: a mathematical modeling study and comparison with experimental data |
| Q24537382 | Fluctuations and quality of control in biological cells: zero-order ultrasensitivity reinvestigated |
| Q40230936 | Fluctuations and slow variables in genetic networks |
| Q24537407 | Fluctuations in repressor control: thermodynamic constraints on stochastic focusing |
| Q47095514 | Gene length as a regulator for ribosome recruitment and protein synthesis: theoretical insights |
| Q42413290 | Gene regulation and noise reduction by coupling of stochastic processes |
| Q29029551 | General transfer matrix formalism to calculate DNA-protein-drug binding in gene regulation: application to OR operator of phage |
| Q34353556 | Genetic identification of adenovirus type 5 genes that influence viral spread |
| Q33382294 | Genetic noise control via protein oligomerization |
| Q33296323 | Global analysis of host response to induction of a latent bacteriophage |
| Q33651556 | Global parameter estimation methods for stochastic biochemical systems |
| Q27488296 | Growth of an RNA virus in single cells reveals a broad fitness distribution |
| Q91638434 | High-resolution studies of lysis-lysogeny decision-making in bacteriophage lambda |
| Q42203458 | How selection affects phenotypic fluctuation |
| Q42383178 | Human Sex Determination at the Edge of Ambiguity: INHERITED XY SEX REVERSAL DUE TO ENHANCED UBIQUITINATION AND PROTEASOMAL DEGRADATION OF A MASTER TRANSCRIPTION FACTOR. |
| Q40739956 | Hybrid Modeling of Cell Signaling and Transcriptional Reprogramming and Its Application in C. elegans Development |
| Q33500663 | Hybrid stochastic simplifications for multiscale gene networks |
| Q37219936 | Hybrid stochastic simulations of intracellular reaction-diffusion systems |
| Q28828779 | Hypothetical biomolecular probe based on a genetic switch with tunable symmetry and stability |
| Q42986808 | Implications of decoupling the intracellular and extracellular levels in multi-level models of virus growth |
| Q40830283 | Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: insights from an identifiability analysis of an in silico network |
| Q37316801 | In Silico Modeling in Infectious Disease |
| Q50136432 | Infection by bacteriophage lambda: an evolving paradigm for cellular individuality. |
| Q33619804 | Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach |
| Q33729125 | Information propagation within the Genetic Network of Saccharomyces cerevisiae |
| Q36106534 | Intercellular Variability in Protein Levels from Stochastic Expression and Noisy Cell Cycle Processes |
| Q29615956 | Intrinsic and extrinsic contributions to stochasticity in gene expression |
| Q24630461 | Intrinsic noise in gene regulatory networks |
| Q34062513 | Ion-dependent dynamics of DNA ejections for bacteriophage lambda |
| Q36066919 | Isocost Lines Describe the Cellular Economy of Genetic Circuits |
| Q53423658 | Kinetic Modeling of Virus Growth in Cells. |
| Q33881486 | Kinetic modeling of biological systems |
| Q33684497 | Lambda-prophage induction modeled as a cooperative failure mode of lytic repression |
| Q35810022 | Landscape and global stability of nonadiabatic and adiabatic oscillations in a gene network |
| Q47368392 | Late-Arriving Signals Contribute Less to Cell-Fate Decisions |
| Q43143010 | Lattice kinetic Monte Carlo simulations of convective-diffusive systems |
| Q31061814 | Learning stochastic process-based models of dynamical systems from knowledge and data |
| Q44477433 | Light- and carbon-signaling pathways. Modeling circuits of interactions |
| Q33681660 | Limitations of quantitative gene regulation models: a case study. |
| Q28541592 | Loads bias genetic and signaling switches in synthetic and natural systems |
| Q33844394 | Lysogeny at mid-twentieth century: P1, P2, and other experimental systems |
| Q38380883 | MRE: a web tool to suggest foreign enzymes for the biosynthesis pathway design with competing endogenous reactions in mind. |
| Q28655461 | Macromolecular networks and intelligence in microorganisms |
| Q88513495 | Making lineage decisions with biological noise: Lessons from the early mouse embryo |
| Q37822089 | Mapping the architecture of the HIV-1 Tat circuit: A decision-making circuit that lacks bistability and exploits stochastic noise |
| Q40324463 | Markov Chain modeling of pyelonephritis-associated pili expression in uropathogenic Escherichia coli |
| Q28817353 | Markov State Models of gene regulatory networks |
| Q42183717 | Mathematical description of gene regulatory units |
| Q34594733 | Measuring retroactivity from noise in gene regulatory networks |
| Q33322890 | Memory in microbes: quantifying history-dependent behavior in a bacterium |
| Q33933956 | MicroRNAs acting in a double-negative feedback loop to control a neuronal cell fate decision |
| Q33781223 | Minimal gene regulatory circuits for a lysis-lysogeny choice in the presence of noise |
| Q34105707 | Model transcriptional networks with continuously varying expression levels |
| Q34122241 | Modeling bistable cell-fate choices in the Drosophila eye: qualitative and quantitative perspectives |
| Q28267748 | Modeling cell signaling networks |
| Q30759466 | Modeling miRNA-mRNA interactions: fitting chemical kinetics equations to microarray data |
| Q38336312 | Modeling stochastic noise in gene regulatory systems |
| Q42126515 | Modeling stochasticity and variability in gene regulatory networks |
| Q33812132 | Modeling the evolution of a classic genetic switch |
| Q52715737 | Modeling-Based Investigation of the Effect of Noise in Cellular Systems. |
| Q35655712 | Modelling non-Markovian dynamics in biochemical reactions. |
| Q36496253 | Modular cell biology: retroactivity and insulation |
| Q33251546 | Module-based analysis of robustness tradeoffs in the heat shock response system |
| Q64234963 | Multi-modality in gene regulatory networks with slow promoter kinetics |
| Q43169274 | Multi-stable dynamics of the non-adiabatic repressilator |
| Q33234905 | Multiscale Hy3S: hybrid stochastic simulation for supercomputers. |
| Q37158053 | Multiscale Modeling of Cellular Epigenetic States: Stochasticity in Molecular Networks, Chromatin Folding in Cell Nuclei, and Tissue Pattern Formation of Cells |
| Q24610764 | Nature, nurture, or chance: stochastic gene expression and its consequences |
| Q38258734 | Network Medicine: New Paradigm in the -Omics Era. |
| Q28397059 | Network-based identification of biomarkers coexpressed with multiple pathways |
| Q37452616 | Noise Decomposition Principle in a Coherent Feed-Forward Transcriptional Regulatory Loop. |
| Q30708248 | Noise Reduction in Complex Biological Switches. |
| Q27333733 | Noise contributions in an inducible genetic switch: a whole-cell simulation study |
| Q28659275 | Noise in biology |
| Q24537307 | Noise in gene expression: origins, consequences, and control |
| Q24792798 | Noise minimization in eukaryotic gene expression |
| Q34997826 | Noise propagation through extracellular signaling leads to fluctuations in gene expression. |
| Q33366529 | Noise reduction by diffusional dissipation in a minimal quorum sensing motif |
| Q28546735 | Noise-Driven Phenotypic Heterogeneity with Finite Correlation Time in Clonal Populations |
| Q33305706 | Noise-induced switches in network systems of the genetic toggle switch |
| Q44598491 | Noise-stabilized long-distance synchronization in populations of model neurons |
| Q33892231 | Nonlinear protein degradation and the function of genetic circuits |
| Q33876749 | On designing multicore-aware simulators for systems biology endowed with OnLine statistics |
| Q33233059 | On the attenuation and amplification of molecular noise in genetic regulatory networks |
| Q33873608 | On the origin and characteristics of noise-induced Lévy walks of E. coli |
| Q30463780 | On-chip cellomics assay enabling algebraic and geometric understanding of epigenetic information in cellular networks of living systems. 1. Temporal aspects of epigenetic information in bacteria |
| Q33326169 | Optimal enumeration of state space of finitely buffered stochastic molecular networks and exact computation of steady state landscape probability |
| Q37265663 | Optimal feedback strength for noise suppression in autoregulatory gene networks |
| Q90124252 | Optimality of the spontaneous prophage induction rate |
| Q35095781 | Optimization of a stochastically simulated gene network model via simulated annealing. |
| Q41884216 | Optimizing information flow in small genetic networks. |
| Q37062064 | Origin of the sharp boundary that discriminates positive and negative selection of thymocytes |
| Q83171482 | Origins of regulated cell-to-cell variability |
| Q35705533 | Orthogonal control of expression mean and variance by epigenetic features at different genomic loci |
| Q21145678 | Oscillatory regulation of Hes1: Discrete stochastic delay modelling and simulation |
| Q37661366 | Pairing computation with experimentation: a powerful coupling for understanding T cell signalling |
| Q40415459 | Parameter estimation in stochastic chemical kinetic models using derivative free optimization and bootstrapping |
| Q33642254 | Parameter inference for discretely observed stochastic kinetic models using stochastic gradient descent |
| Q91869567 | Perspective: Engineering noise in biological systems towards predictive stochastic design |
| Q36852120 | Perspective: Stochastic algorithms for chemical kinetics |
| Q39893145 | Phage DNA dynamics in cells with different fates. |
| Q34539889 | Pharmacodynamics, population dynamics, and the evolution of persistence in Staphylococcus aureus |
| Q26752520 | Phenotypic Variability in Synthetic Biology Applications: Dealing with Noise in Microbial Gene Expression |
| Q33805340 | Phenotypic heterogeneity in mycobacterial stringent response |
| Q92346292 | Physical implications of so(2, 1) symmetry in exact solutions for a self-repressing gene |
| Q36724432 | Population-Dynamic Modeling of Bacterial Horizontal Gene Transfer by Natural Transformation |
| Q36793610 | Positive feedback in cellular control systems. |
| Q37132556 | Possible regulation of genes associated with intracellular signaling cascade in rat liver regeneration |
| Q33280627 | Potential energy landscape and robustness of a gene regulatory network: toggle switch |
| Q28533397 | Potential role of a bistable histidine kinase switch in the asymmetric division cycle of Caulobacter crescentus |
| Q24605787 | Predicting gene-regulation functions: lessons from temperate bacteriophages |
| Q34624471 | Predicting stochastic gene expression dynamics in single cells |
| Q35146614 | Prediction and measurement of an autoregulatory genetic module |
| Q93222054 | Probabilistic control of HIV latency and transactivation by the Tat gene circuit |
| Q34276687 | Probability landscape of heritable and robust epigenetic state of lysogeny in phage lambda |
| Q28236112 | Programmable bacteria detect and record an environmental signal in the mammalian gut |
| Q53426030 | Programming discrete distributions with chemical reaction networks. |
| Q50609615 | Quantifying gene expression variability arising from randomness in cell division times. |
| Q28538181 | Quantifying intrinsic and extrinsic variability in stochastic gene expression models |
| Q34205663 | Quantitative analysis of cellular metabolic dissipative, self-organized structures |
| Q28083248 | Quantitative and logic modelling of molecular and gene networks |
| Q33340911 | Quantitative kinetic analysis of the bacteriophage lambda genetic network |
| Q35184934 | Rapid optimization of gene dosage in E. coli using DIAL strains |
| Q51711031 | Reference gene selection for real-time RT-PCR in eight kinds of rat regenerating hepatic cells. |
| Q30493411 | Regulatory activity revealed by dynamic correlations in gene expression noise |
| Q38455207 | Reverse-engineering gene-regulatory networks using evolutionary algorithms and grid computing |
| Q35194686 | Revisiting bistability in the lysis/lysogeny circuit of bacteriophage lambda |
| Q34433193 | Ribozyme-based insulator parts buffer synthetic circuits from genetic context |
| Q38853930 | Robust stochastic chemical reaction networks and bounded tau-leaping |
| Q37443793 | Robustness and coherence of a three-protein circadian oscillator: landscape and flux perspectives |
| Q34364418 | Robustness and information propagation in attractors of Random Boolean Networks |
| Q33894337 | Robustness of circadian rhythms with respect to molecular noise |
| Q37154656 | Robustness, dissipations and coherence of the oscillation of circadian clock: potential landscape and flux perspectives |
| Q34560633 | Role of cell-to-cell variability in activating a positive feedback antiviral response in human dendritic cells |
| Q35459400 | Sealable femtoliter chamber arrays for cell-free biology |
| Q34189071 | Self-consistent proteomic field theory of stochastic gene switches |
| Q40324429 | Sensitivity analysis of discrete stochastic systems |
| Q51564391 | Serial expression analysis of liver regeneration-related genes in rat regenerating liver. |
| Q34186707 | Signaling in small subcellular volumes. I. Stochastic and diffusion effects on individual pathways |
| Q64096181 | Simulation and inference algorithms for stochastic biochemical reaction networks: from basic concepts to state-of-the-art |
| Q37367376 | Slow Scale Tau-leaping Method |
| Q21999713 | Slow, stochastic transgene repression with properties of a timer |
| Q37952114 | Software for systems biology: from tools to integrated platforms |
| Q33551049 | Solving the chemical master equation using sliding windows |
| Q35875319 | Sources of Variability in a Synthetic Gene Oscillator. |
| Q36021533 | Spatial aspects in biological system simulations |
| Q27324307 | Spatial stochastic dynamics enable robust cell polarization |
| Q35545482 | Spectral methods for parametric sensitivity in stochastic dynamical systems |
| Q41723557 | Stability of Systems with Stochastic Delays and Applications to Genetic Regulatory Networks |
| Q28828703 | State Space Truncation with Quantified Errors for Accurate Solutions to Discrete Chemical Master Equation |
| Q36096866 | State of the art in silico tools for the study of signaling pathways in cancer |
| Q34761823 | Statistical ensemble analysis for simulating extrinsic noise-driven response in NF-κB signaling networks |
| Q34002893 | Steady-state global optimization of metabolic non-linear dynamic models through recasting into power-law canonical models |
| Q34608339 | Stiffness detection and reduction in discrete stochastic simulation of biochemical systems |
| Q38610766 | Stochastic Cell Fate and Longevity of Offspring |
| Q27318039 | Stochastic Regulation of her1/7 Gene Expression Is the Source of Noise in the Zebrafish Somite Clock Counteracted by Notch Signalling |
| Q40529613 | Stochastic S-system modeling of gene regulatory network |
| Q35221956 | Stochastic cellular fate decision making by multiple infecting lambda phage |
| Q37354573 | Stochastic dynamics and non-equilibrium thermodynamics of a bistable chemical system: the Schlögl model revisited |
| Q36494123 | Stochastic dynamics of macromolecular-assembly networks. |
| Q35002338 | Stochastic exit from mitosis in budding yeast: model predictions and experimental observations |
| Q24682736 | Stochastic focusing: fluctuation-enhanced sensitivity of intracellular regulation |
| Q34805489 | Stochastic gene expression as a many-body problem |
| Q37549111 | Stochastic gene expression as a molecular switch for viral latency |
| Q34644561 | Stochastic gene expression in fluctuating environments |
| Q40230909 | Stochastic gene expression in switching environments |
| Q30577378 | Stochastic holin expression can account for lysis time variation in the bacteriophage λ. |
| Q38355116 | Stochastic kinetic modeling of vesicular stomatitis virus intracellular growth |
| Q21146037 | Stochastic mRNA synthesis in mammalian cells |
| Q34202746 | Stochastic modeling for the expression of a gene regulated by competing transcription factors. |
| Q41335718 | Stochastic modeling of biochemical systems with multistep reactions using state-dependent time delay. |
| Q36899968 | Stochastic modeling of gene positive autoregulation networks involving signal molecules |
| Q51856579 | Stochastic modelling for quantitative description of heterogeneous biological systems. |
| Q42793149 | Stochastic modelling of nucleocytoplasmic oscillations of the transcription factor Msn2 in yeast |
| Q34694165 | Stochastic models for regulatory networks of the genetic toggle switch |
| Q43194475 | Stochastic probability landscape model for switching efficiency, robustness, and differential threshold for induction of genetic circuit in phage lambda |
| Q36785165 | Stochastic receptor expression allows sensitive bacteria to evade phage attack. Part I: experiments |
| Q34353157 | Stochastic regulation in early immune response |
| Q33882325 | Stochastic sequence-level model of coupled transcription and translation in prokaryotes |
| Q34669804 | Stochastic simulation in systems biology |
| Q41781002 | Stochastic simulations of minimal self-reproducing cellular systems |
| Q33797254 | Stochastic simulations of the tetracycline operon |
| Q28365103 | Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations |
| Q35644952 | Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models |
| Q33894343 | Synchronizing genetic relaxation oscillators by intercell signaling |
| Q37074216 | Synthetic control of a fitness tradeoff in yeast nitrogen metabolism |
| Q33281142 | Synthetic tetracycline-inducible regulatory networks: computer-aided design of dynamic phenotypes |
| Q39183279 | Systematic Analysis of Cell-to-Cell Expression Variation of T Lymphocytes in a Human Cohort Identifies Aging and Genetic Associations. |
| Q33891519 | Systems engineering medicine: engineering the inflammation response to infectious and traumatic challenges |
| Q38004974 | Systems immunology: a survey of modeling formalisms, applications and simulation tools |
| Q35172083 | Systems interface biology |
| Q35659539 | Systems vaccinology: its promise and challenge for HIV vaccine development |
| Q28473454 | Temperature control of fimbriation circuit switch in uropathogenic Escherichia coli: quantitative analysis via automated model abstraction |
| Q30487156 | Temporal switching and cell-to-cell variability in Ca2+ release activity in mammalian cells |
| Q24544957 | The Bacillus subtilis sin operon: an evolvable network motif |
| Q47447841 | The Evolution of Gene-Specific Transcriptional Noise Is Driven by Selection at the Pathway Level. |
| Q43161077 | The Time Dependent Propensity Function for Acceleration of Spatial Stochastic Simulation of Reaction-Diffusion Systems. |
| Q35204478 | The effect of coupled stochastic processes in a two-state biochemical switch |
| Q45947072 | The effects of time-varying temperature on delays in genetic networks. |
| Q30939886 | The future of bacteriophage biology |
| Q38859993 | The hidden life of integrative and conjugative elements |
| Q56529292 | The mobility of packaged phage genome controls ejection dynamics |
| Q36292780 | The role of the Hes1 crosstalk hub in Notch-Wnt interactions of the intestinal crypt |
| Q41863973 | The selective values of alleles in a molecular network model are context dependent. |
| Q34185516 | The sonic hedgehog signaling system as a bistable genetic switch |
| Q34981119 | The stochastic quasi-steady-state assumption: reducing the model but not the noise |
| Q34417092 | The virus as metabolic engineer |
| Q35109629 | Thirteen years of building constraint-based in silico models of Escherichia coli |
| Q47555033 | Threshold response and bistability in gene regulation by small noncoding RNA. |
| Q21145327 | To lyse or not to lyse: transient-mediated stochastic fate determination in cells infected by bacteriophages |
| Q42912719 | Toggle switch: noise determines the winning gene |
| Q36822234 | Top-down network analysis to drive bottom-up modeling of physiological processes |
| Q28650510 | Toward an integrated software platform for systems pharmacology |
| Q34415734 | Toward predictive models of mammalian cells |
| Q36516053 | Transcriptional control of noise in gene expression |
| Q30478122 | Transcriptional noise and cellular heterogeneity in mammalian macrophages |
| Q40168881 | Transient Thresholding: A Mechanism Enabling Noncooperative Transcriptional Circuitry to Form a Switch |
| Q34466974 | Transient changes in intercellular protein variability identify sources of noise in gene expression |
| Q35753726 | Transient dynamics of genetic regulatory networks |
| Q41132625 | Transitions in genetic toggle switches driven by dynamic disorder in rate coefficients |
| Q33812384 | Tuning and controlling gene expression noise in synthetic gene networks. |
| Q33926820 | Ultrasensitivity and noise propagation in a synthetic transcriptional cascade. |
| Q39791426 | Unusual integrase gene expression on the clc genomic island in Pseudomonas sp. strain B13. |
| Q30494072 | Using movies to analyse gene circuit dynamics in single cells |
| Q35835041 | Using noise to control heterogeneity of isogenic populations in homogenous environments. |
| Q37709242 | Using systems biology approaches to understand cardiac inflammation and extracellular matrix remodeling in the setting of myocardial infarction |
| Q36988221 | What's Luck Got to Do with It: Single Cells, Multiple Fates, and Biological Nondeterminism |
| Q48827479 | When sensing is gambling: An experimental system reveals how plasticity can generate tunable bet-hedging strategies. |
| Q37410641 | Why do phage play dice? |
| Q40269715 | Why the lysogenic state of phage lambda is so stable: a mathematical modeling approach |
Search more.