A step-by-step overview of the dynamic process of epitope selection by major histocompatibility complex class II for presentation to helper T cells

scientific article

A step-by-step overview of the dynamic process of epitope selection by major histocompatibility complex class II for presentation to helper T cells is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.12688/F1000RESEARCH.7664.1
P3181OpenCitations bibliographic resource ID915586
P932PMC publication ID4902097
P698PubMed publication ID27347387

P50authorScheherazade Sadegh-NasseriQ45276659
P2860cites workHLA-DR molecules from an antigen-processing mutant cell line are associated with invariant chain peptidesQ24294751
The structure of an intermediate in class II MHC maturation: CLIP bound to HLA-DR3Q24303524
The lymph as a pool of self-antigensQ42672113
A kinetic intermediate in the reaction of an antigenic peptide and I-EkQ43440073
Specific role for cathepsin S in the generation of antigenic peptides in vivoQ43867816
Sibling rivalry: competition between MHC class II family members inhibits immunityQ44284098
Activation of lysosomal function during dendritic cell maturationQ44333919
Interaction of peptide antigens and class II major histocompatibility complex antigensQ45044764
Allocation of helper T-cell epitope immunodominance according to three-dimensional structure in the human immunodeficiency virus type I envelope glycoprotein gp120.Q45735715
Structural intermediates in the reactions of antigenic peptides with MHC molecules.Q45940913
Intracellular transport of class II MHC molecules directed by invariant chain.Q45941447
Formation of a highly peptide-receptive state of class II MHC.Q46139976
Invariant chain distinguishes between the exogenous and endogenous antigen presentation pathwaysQ46424023
An essential role for HLA-DM in antigen presentation by class II major histocompatibility moleculesQ24309308
HLA-DM induces clip dissociation from MHC class II αβ dimers and facilitates peptide loadingQ24318038
Essential role for cathepsin S in MHC class II-associated invariant chain processing and peptide loadingQ24328923
The complete sequence of the mRNA for the HLA-DR-associated invariant chain reveals a polypeptide with an unusual transmembrane polarityQ24555648
Small molecules that enhance the catalytic efficiency of HLA-DMQ24623411
MHC Class II Auto-Antigen Presentation is UnconventionalQ26800138
HLA-DO acts as a substrate mimic to inhibit HLA-DM by a competitive mechanismQ27675409
Crystal Structure of the HLA-DM–HLA-DR1 Complex Defines Mechanisms for Rapid Peptide SelectionQ27675568
Conformational lability in the class II MHC 310 helix and adjacent extended strand dictate HLA-DM susceptibility and peptide exchangeQ27675571
Susceptibility to HLA-DM Protein Is Determined by a Dynamic Conformation of Major Histocompatibility Complex Class II Molecule Bound with PeptideQ27684590
Crystal structure of the human class II MHC protein HLA-DR1 complexed with an influenza virus peptideQ27731272
The Structure of HLA-DM, the Peptide Exchange Catalyst that Loads Antigen onto Class II MHC Molecules during Antigen PresentationQ27765680
Exogenous antigens bind MHC class II first, and are processed by cathepsins laterQ28084268
Interaction of HLA-DR with an acidic face of HLA-DM disrupts sequence-dependent interactions with peptidesQ28202956
A gene in the human major histocompatibility complex class II region controlling the class I antigen presentation pathwayQ28266815
Mice lacking the MHC class II-associated invariant chainQ28507606
Defective Antigen Processing in GILT-Free MiceQ28586564
Cathepsin L: Critical Role in Ii Degradation and CD4 T Cell Selection in the ThymusQ28613227
Invariant chain made in Escherichia coli has an exposed N-terminal segment that blocks antigen binding to HLA-DR1 and a trimeric C-terminal segment that binds empty HLA-DR1Q28776057
SYFPEITHI: database for MHC ligands and peptide motifsQ29616214
HLA-A2.1-associated peptides from a mutant cell line: a second pathway of antigen presentationQ30434689
Identification and modulation of a naturally processed T cell epitope from the diabetes-associated autoantigen human glutamic acid decarboxylase 65 (hGAD65).Q30454241
Identification of Plasmodium falciparum antigens by antigenic analysis of genomic and proteomic dataQ30814677
HLA-DM captures partially empty HLA-DR molecules for catalyzed removal of peptideQ33292091
HLA-DM mediates epitope selection by a "compare-exchange" mechanism when a potential peptide pool is availableQ33384128
An expanded self-antigen peptidome is carried by the human lymph as compared to the plasma.Q33548677
Refolding and reassembly of separate alpha and beta chains of class II molecules of the major histocompatibility complex leads to increased peptide-binding capacityQ33606693
Pathways of antigen processingQ33631854
Direct observation of disordered regions in the major histocompatibility complex class II-associated invariant chainQ33878348
Proteolysis in MHC class II antigen presentation: who's in charge?Q33885986
Enhanced catalytic action of HLA-DM on the exchange of peptides lacking backbone hydrogen bonds between their N-terminal region and the MHC class II alpha-chainQ52552855
Short peptide sequences mimic HLA-DM functions.Q52685879
Sodium dodecyl sulfate stability of HLA-DR1 complexes correlates with burial of hydrophobic residues in pocket 1.Q54102029
Antigen processing and class II MHC peptide-loading compartments in human B-lymphoblastoid cellsQ58323390
A role for peptide in determining MHC class II structureQ59077345
Peptide binding inhibits protein aggregation of invariant-chain free class II dimers and promotes surface expression of occupied moleculesQ59096640
Transient accumulation of new class II MHC molecules in a novel endocytic compartment in B lymphocytesQ59098594
Activation of type B T cells after protein immunization reveals novel pathways of in vivo presentation of peptidesQ64449276
Capacity of intact proteins to bind to MHC class II moleculesQ69741058
Extensive trafficking of MHC class II-invariant chain complexes in the endocytic pathway and appearance of peptide-loaded class II in multiple compartmentsQ71843540
Intact proteins can bind to class II histocompatibility molecules with high affinityQ73721633
Cutting edge: H-2DM is responsible for the large differences in presentation among peptides selected by I-Ak during antigen processingQ73827781
Impaired invariant chain degradation and antigen presentation and diminished collagen-induced arthritis in cathepsin S null miceQ74595052
Stable peptide binding to MHC class II molecule is rapid and is determined by a receptive conformation shaped by prior association with low affinity peptidesQ77320371
The phenotype of H-2M-deficient mice is dependent on the MHC class II molecules expressedQ77353669
Large protein fragments as substrates for endocytic antigen capture by MHC class II moleculesQ77436913
One of two unstructured domains of Ii becomes ordered in complexes with MHC class II moleculesQ77994488
Kinetics of antigenic peptide binding to the class II major histocompatibility molecule I-AdQ37519795
Conformational heterogeneity of MHC class II induced upon binding to different peptides is a key regulator in antigen presentation and epitope selectionQ37672424
Routes to manipulate MHC class II antigen presentationQ37812880
Disulfide Reduction in the Endocytic Pathway: Immunological Functions of Gamma-Interferon-Inducible Lysosomal Thiol ReductaseQ37867108
Expanding roles for GILT in immunityQ38067944
HLA-DO and Its Role in MHC Class II Antigen Presentation.Q38134729
Determinants of immunodominance for CD4 T cellsQ38313559
Dominance and crypticity of T cell antigenic determinantsQ40486347
APCs present A beta(k)-derived peptides that are autoantigenic to type B T cells.Q40656630
Formation of two peptide/MHC II isomers is catalyzed differentially by HLA-DM.Q40676502
Relaxed DM requirements during class II peptide loading and CD4+ T cell maturation in BALB/c miceQ40814359
Invariant chain structure and MHC class II functionQ40968427
Mediation by HLA-DM of dissociation of peptides from HLA-DRQ41333614
Accumulation of HLA-DM, a regulator of antigen presentation, in MHC class II compartmentsQ41412265
Assembly and intracellular transport of HLA-DM and correction of the class II antigen-processing defect in T2 cellsQ41440525
MHC class II function preserved by low-affinity peptide interactions preceding stable bindingQ41447819
Major histocompatibility complex class II molecules induce the formation of endocytic MIIC-like structuresQ41450247
Inhibition of endosomal proteolytic activity by leupeptin blocks surface expression of MHC class II molecules and their conversion to SDS resistance alpha beta heterodimers in endosomesQ41515448
Invariant chain peptides in most HLA-DR molecules of an antigen-processing mutantQ41589934
The human class II MHC protein HLA-DR1 assembles as empty alpha beta heterodimers in the absence of antigenic peptideQ41640226
Selection of the MHC Class II-associated peptide repertoire by HLA-DMQ41649540
Segregation of MHC class II molecules from MHC class I molecules in the Golgi complex for transport to lysosomal compartmentsQ41695026
Invariant chain association with HLA-DR molecules inhibits immunogenic peptide bindingQ41731115
The biosynthetic pathway of MHC class II but not class I molecules intersects the endocytic routeQ41737562
T cell recognition of fibrinogen. A determinant on the A alpha-chain does not require processing.Q41912354
MHC class II structure, occupancy and surface expression determined by post-endoplasmic reticulum antigen bindingQ41941589
Defective processing and presentation of exogenous antigens in mutants with normal HLA class II genesQ41944480
Whole proteomes as internal standards in quantitative proteomicsQ41966883
A Peptide/MHCII conformer generated in the presence of exchange peptide is substrate for HLA-DM editingQ42015843
Determinants of the peptide-induced conformational change in the human class II major histocompatibility complex protein HLA-DR1.Q42617265
Structure of a trimeric domain of the MHC class II-associated chaperonin and targeting protein Ii.Q42661328
Peptide binding to HLA-DR1: a peptide with most residues substituted to alanine retains MHC bindingQ33920167
The kinetic basis of peptide exchange catalysis by HLA-DMQ33947777
Cutting edge: HLA-DM functions through a mechanism that does not require specific conserved hydrogen bonds in class II MHC-peptide complexesQ34028384
Isolation and characterization of the intracellular MHC class II compartment.Q34340778
HLA-DM targets the hydrogen bond between the histidine at position beta81 and peptide to dissociate HLA-DR-peptide complexes.Q34483195
Divergent paths for the selection of immunodominant epitopes from distinct antigenic sourcesQ34561569
A reductionist cell-free major histocompatibility complex class II antigen processing system identifies immunodominant epitopes.Q34679722
The convergent roles of tapasin and HLA-DM in antigen presentation.Q34784992
Unique autoreactive T cells recognize insulin peptides generated within the islets of Langerhans in autoimmune diabetesQ34831727
HLA-DO as the optimizer of epitope selection for MHC class II antigen presentationQ34948997
Lysosomal cysteine proteases regulate antigen presentationQ35140806
Peptidylarginine deiminase 2, 3 and 4 have distinct specificities against cellular substrates: novel insights into autoantigen selection in rheumatoid arthritisQ35825742
The Thermodynamic Mechanism of Peptide-MHC Class II Complex Formation Is a Determinant of Susceptibility to HLA-DM.Q35861946
How MHC class II molecules work: peptide-dependent completion of protein folding.Q35873641
A gene required for class II-restricted antigen presentation maps to the major histocompatibility complexQ36230650
The lysosomal cysteine proteases in MHC class II antigen presentationQ36266499
Cathepsin S controls the trafficking and maturation of MHC class II molecules in dendritic cells.Q36301521
HLA-DM constrains epitope selection in the human CD4 T cell response to vaccinia virus by favoring the presentation of peptides with longer HLA-DM-mediated half-livesQ36303660
Endosomal proteases in antigen presentationQ36336164
Two-gene control of the expression of a murine Ia antigenQ36341979
Regulation of antigen presentation by acidic pH.Q36351024
Cell surface expression of class II histocompatibility antigens occurs in the absence of the invariant chainQ36353070
A mutant human histocompatibility leukocyte antigen DR molecule associated with invariant chain peptidesQ36362737
Evidence that binding site occupancy is necessary and sufficient for effective major histocompatibility complex (MHC) class II transport through the secretory pathway redefines the primary function of class II-associated invariant chain peptides (CLQ36367626
HLA-DM interactions with intermediates in HLA-DR maturation and a role for HLA-DM in stabilizing empty HLA-DR moleculesQ36377428
Heterogeneity and plasticity of T helper cellsQ36388771
HLA-DM recognizes the flexible conformation of major histocompatibility complex class II.Q36404572
An integrative bioinformatic approach for studying escape mutations in human immunodeficiency virus type 1 gag in the Pumwani Sex Worker CohortQ36483367
The Dendritic Cell Major Histocompatibility Complex II (MHC II) Peptidome Derives from a Variety of Processing Pathways and Includes Peptides with a Broad Spectrum of HLA-DM SensitivityQ36674612
Extracellular antigen processing and presentation by immature dendritic cellsQ36780502
Proteases: essential actors in processing antigens and intracellular toll-like receptors.Q37193064
HLA-DM mediates peptide exchange by interacting transiently and repeatedly with HLA-DR1.Q37345643
Cathepsin S activity regulates antigen presentation and immunityQ37382422
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P407language of work or nameEnglishQ1860
P304page(s)1305
P577publication date2016-01-01
P13046publication type of scholarly workreview articleQ7318358
P1433published inF1000ResearchQ27701587
P1476titleA step-by-step overview of the dynamic process of epitope selection by major histocompatibility complex class II for presentation to helper T cells
P478volume5

Reverse relations

cites work (P2860)
Q64114857Cathepsin L promotes secretory IgA response by participating in antigen presentation pathways during Mycoplasma Hyopneumoniae infection
Q42054161Distorted Immunodominance by Linker Sequences or other Epitopes from a Second Protein Antigen During Antigen-Processing
Q40445297HLA-DR polymorphisms influence in vivo responses to staphylococcal toxic shock syndrome toxin-1 in a transgenic mouse model
Q58608551Predicting CD4 T-cell epitopes based on antigen cleavage, MHCII presentation, and TCR recognition
Q55084358Structural Influence on the Dominance of Virus-Specific CD4 T Cell Epitopes in Zika Virus Infection
Q92651121Structure and Function of Molecular Chaperones that Govern Immune Peptide Loading
Q60944020The Phosphoinositide Kinase PIKfyve Promotes Cathepsin-S-Mediated Major Histocompatibility Complex Class II Antigen Presentation

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