| scholarly article | Q13442814 |
| P50 | author | He Huang | Q57030207 |
| P2093 | author name string | Chengcheng Song | |
| Shaocun Zhang | |||
| P2860 | cites work | Chromosomal macrodomains and associated proteins: implications for DNA organization and replication in gram negative bacteria | Q21092425 |
| Identification of replication origins in archaeal genomes based on the Z-curve method | Q21343029 | ||
| CELLULAR DNA REPLICASES: Components and Dynamics at the Replication Fork | Q22065415 | ||
| Quantum dots for live cells, in vivo imaging, and diagnostics | Q24532049 | ||
| Identification of short 'eukaryotic' Okazaki fragments synthesized from a prokaryotic replication origin | Q24534576 | ||
| The DNA binding domain of the initiator protein DnaA | Q24568280 | ||
| Conserved nucleosome positioning defines replication origins | Q24595251 | ||
| DNA replication in the archaea | Q24672512 | ||
| ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data | Q24813756 | ||
| Structural basis of replication origin recognition by the DnaA protein | Q27640922 | ||
| The interaction of DiaA and DnaA regulates the replication cycle in E. coli by directly promoting ATP DnaA-specific initiation complexes | Q27647325 | ||
| A common mechanism for the ATP-DnaA-dependent formation of open complexes at the replication origin | Q27649681 | ||
| Structural Basis of the Transcriptional Regulation of the Proline Utilization Regulon by Multifunctional PutA | Q27650991 | ||
| The DNA replication fork in eukaryotic cells. | Q27939216 | ||
| Genome-wide location and function of DNA binding proteins | Q28131765 | ||
| Isothermal titration calorimetry of protein-protein interactions | Q28145988 | ||
| ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia | Q28274448 | ||
| Characterization of DNA-binding proteins using multiplexed competitor EMSA | Q28303046 | ||
| Mechanism of origin unwinding: sequential binding of DnaA to double- and single-stranded DNA | Q28360242 | ||
| Genetic and physical mapping of DNA replication origins in Haloferax volcanii | Q28469214 | ||
| Genome-wide mapping of in vivo protein-DNA interactions | Q29547162 | ||
| High-frequency transformation of yeast: autonomous replication of hybrid DNA molecules | Q29614232 | ||
| Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing | Q29618021 | ||
| Applications of next-generation sequencing technologies in functional genomics | Q29619225 | ||
| Replication protein A in Pyrococcus furiosus is involved in homologous DNA recombination | Q30667012 | ||
| DNA-protein interactions: methods for detection and analysis | Q31049689 | ||
| Isothermal titration calorimetry: experimental design, data analysis, and probing macromolecule/ligand binding and kinetic interactions | Q31134461 | ||
| ChIP-chip: a genomic approach for identifying transcription factor binding sites | Q38287979 | ||
| DNase I footprinting. | Q38300708 | ||
| Highly reproducible ChIP-on-chip analysis to identify genome-wide protein binding and chromatin status in Arabidopsis thaliana | Q38312406 | ||
| Assessing protein-RNA interactions using microfluidic capillary mobility shift assays | Q82730670 | ||
| Direct detection of carcinoembryonic antigen autoantibodies in clinical human serum samples using a surface plasmon resonance sensor | Q83212723 | ||
| DeOri: a database of eukaryotic DNA replication origins | Q83788327 | ||
| Advances in surface plasmon resonance sensing with nanoparticles and thin films: nanomaterials, surface chemistry, and hybrid plasmonic techniques | Q84767668 | ||
| High-throughput screening in the diagnostics industry | Q94074397 | ||
| Electrophoretic mobility shift assay for the analysis of interactions of jasmonic acid-responsive transcription factors with DNA. | Q38316043 | ||
| SSB binding to ssDNA using isothermal titration calorimetry | Q38321759 | ||
| Direct visualization of electrophoretic mobility shift assays using nanoparticle-aptamer conjugates | Q38329481 | ||
| Rapid qualitative evaluation of DNA transcription factor NF-κB by microchip electrophoretic mobility shift assay in mammalian cells. | Q38330110 | ||
| Chromatin immunoprecipitation (ChIP) on chip experiments uncover a widespread distribution of NF-Y binding CCAAT sites outside of core promoters. | Q38332126 | ||
| Discrete start sites for DNA synthesis in the yeast ARS1 origin. | Q38340747 | ||
| DNA binding specificity of the replication initiator protein, DnaA from Helicobacter pylori | Q38347444 | ||
| A sensitive two-color electrophoretic mobility shift assay for detecting both nucleic acids and protein in gels | Q38352391 | ||
| Electrophoretic mobility shift assays for protein-DNA complexes involved in DNA repair | Q39286672 | ||
| Activity of the c-myc replicator at an ectopic chromosomal location | Q39446781 | ||
| Autoregulation of the dnaA-dnaN operon and effects of DnaA protein levels on replication initiation in Bacillus subtilis | Q39503880 | ||
| Interaction of the IciA protein with AT-rich regions in plasmid replication origins | Q39716316 | ||
| Genetic structure of the dnaA region of the cyanobacterium Synechocystis sp. strain PCC6803 | Q39837703 | ||
| Fluorescence resonance energy transfer | Q40398693 | ||
| Highly organized DnaA-oriC complexes recruit the single-stranded DNA for replication initiation | Q41577510 | ||
| Replication initiation point mapping | Q41688588 | ||
| Interactions of DnaA proteins from distantly related bacteria with the replication origin of the broad host range plasmid RK2. | Q41728432 | ||
| Electrophoretic mobility shift assay (EMSA) for detecting protein-nucleic acid interactions | Q41902384 | ||
| Origin of DNA replication at the human lamin B2 locus: OBR or ABR? | Q41994341 | ||
| Replication termination and chromosome dimer resolution in the archaeon Sulfolobus solfataricus | Q42167006 | ||
| Helicobacter pylori oriC--the first bipartite origin of chromosome replication in Gram-negative bacteria | Q42408624 | ||
| High-resolution mapping of in vivo genomic transcription factor binding sites using in situ DNase I footprinting and ChIP-seq | Q42546286 | ||
| A novel DnaA protein-binding site at 94.7 min on the Escherichia coli chromosome | Q42639634 | ||
| Identification and autonomous replication capability of a chromosomal replication origin from the archaeon Sulfolobus solfataricus | Q43016573 | ||
| Mapping of active replication origins in vivo in thaum- and euryarchaeal replicons. | Q43019217 | ||
| Replication initiator DnaA interacts with an anti-terminator NusG in T. tengcongensis | Q43024586 | ||
| Multiple replication origins of the archaeon Halobacterium species NRC-1. | Q43032665 | ||
| The identification of nucleic acid-interacting proteins using a simple proteomics-based approach that directly incorporates the electrophoretic mobility shift assay | Q33250351 | ||
| Capillary electrophoresis with laser-induced fluorescence: environmental applications | Q33327088 | ||
| ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions | Q33416643 | ||
| Increased origin activity in transformed versus normal cells: identification of novel protein players involved in DNA replication and cellular transformation | Q33523235 | ||
| Recent Advances in the Identification of Replication Origins Based on the Z-curve Method | Q33565341 | ||
| ChIP-PaM: an algorithm to identify protein-DNA interaction using ChIP-Seq data | Q33595067 | ||
| Three replication origins in Sulfolobus species: synchronous initiation of chromosome replication and asynchronous termination | Q33782439 | ||
| DnaA, the initiator of Escherichia coli chromosomal replication, is located at the cell membrane | Q33790421 | ||
| Sequence-specific interactions of Rep proteins with ssDNA in the AT-rich region of the plasmid replication origin | Q33843099 | ||
| Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation | Q33850026 | ||
| In vivo interactions of archaeal Cdc6/Orc1 and minichromosome maintenance proteins with the replication origin | Q33944339 | ||
| DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine | Q34058015 | ||
| Polymerases and the replisome: machines within machines. | Q34065994 | ||
| FRep: a fluorescent protein-based bioprobe for in vivo detection of protein-DNA interactions | Q34072223 | ||
| Chromatin immunoprecipitation (ChIP). | Q34098063 | ||
| Ori-Finder 2, an integrated tool to predict replication origins in the archaeal genomes. | Q34180708 | ||
| Bacterial replication initiator DnaA. Rules for DnaA binding and roles of DnaA in origin unwinding and helicase loading | Q34187344 | ||
| Origins and complexes: the initiation of DNA replication | Q34205285 | ||
| Evaluating genome-scale approaches to eukaryotic DNA replication | Q34232735 | ||
| The dnaA protein complex with the E. coli chromosomal replication origin (oriC) and other DNA sites. | Q34245423 | ||
| An Archaeal Chromosomal Autonomously Replicating Sequence Element from an Extreme Halophile,Halobacteriumsp. Strain NRC-1 | Q34267329 | ||
| oriC-encoded instructions for the initiation of bacterial chromosome replication. | Q34459103 | ||
| Current and emerging commercial optical biosensors | Q34464899 | ||
| Isothermal titration calorimetry in drug discovery | Q34483315 | ||
| Measurement of protein-DNA interaction parameters by electrophoresis mobility shift assay | Q34506561 | ||
| Chromatin signatures of the Drosophila replication program | Q34548240 | ||
| GINS, a central nexus in the archaeal DNA replication fork | Q34683040 | ||
| Optical biosensors in drug discovery | Q34743218 | ||
| The bacterial replication initiator DnaA. DnaA and oriC, the bacterial mode to initiate DNA replication | Q34987457 | ||
| A multifunctional plasmid-encoded replication initiation protein both recruits and positions an active helicase at the replication origin | Q35170478 | ||
| Analysis of topoisomerase function in bacterial replication fork movement: use of DNA microarrays | Q35206211 | ||
| Molecular characterization of the minimal replicon and the unidirectional theta replication of pSCM201 in extremely halophilic archaea | Q35220626 | ||
| Genome-wide depletion of replication initiation events in highly transcribed regions | Q35493806 | ||
| Use of gel retardation to analyze protein-nucleic acid interactions | Q35655392 | ||
| ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments | Q35676599 | ||
| Methidiumpropyl-EDTA-Fe(II) and DNase I footprinting report different small molecule binding site sizes on DNA | Q35685739 | ||
| Characterization of protein-protein interactions by isothermal titration calorimetry | Q35738233 | ||
| Extrachromosomal element capture and the evolution of multiple replication origins in archaeal chromosomes | Q35749512 | ||
| Mechanism for the TtDnaA-Tt-oriC cooperative interaction at high temperature and duplex opening at an unusual AT-rich region in Thermoanaerobacter tengcongensis | Q35837356 | ||
| Genomewide and biochemical analyses of DNA-binding activity of Cdc6/Orc1 and Mcm proteins in Pyrococcus sp. | Q35865311 | ||
| An improved method for the in vitro evolution of aptamers and applications in protein detection and purification | Q36079598 | ||
| DNA polymerases that propagate the eukaryotic DNA replication fork | Q36090978 | ||
| Surface plasmon resonance: applications in understanding receptor-ligand interaction | Q36239099 | ||
| DoriC 5.0: an updated database of oriC regions in both bacterial and archaeal genomes. | Q36491411 | ||
| Ori-Finder: a web-based system for finding oriCs in unannotated bacterial genomes | Q36509481 | ||
| Identification of the DNA bases of a DNase I footprint by the use of dye primer sequencing on an automated capillary DNA analysis instrument | Q36537407 | ||
| Nanomaterial-based amplified transduction of biomolecular interactions | Q36694296 | ||
| Two-dimensional gel electrophoretic method for mapping DNA replicons | Q36785976 | ||
| Microfluidic screening of electrophoretic mobility shifts elucidates riboswitch binding function | Q36817055 | ||
| Short DNA fragments without sequence similarity are initiation sites for replication in the chromosome of the yeast Yarrowia lipolytica | Q36846885 | ||
| The bacterial DnaC helicase loader is a DnaB ring breaker | Q36895278 | ||
| Towards integrated and sensitive surface plasmon resonance biosensors: a review of recent progress | Q36918423 | ||
| Principles and concepts of DNA replication in bacteria, archaea, and eukarya | Q36938523 | ||
| Chromosome replication dynamics in the archaeon Sulfolobus acidocaldarius | Q36954955 | ||
| Archaeal eukaryote-like Orc1/Cdc6 initiators physically interact with DNA polymerase B1 and regulate its functions | Q37194838 | ||
| Identification of telomere-associated molecules by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP). | Q37289631 | ||
| Multiple replication origins of Halobacterium sp. strain NRC-1: properties of the conserved orc7-dependent oriC1. | Q37302010 | ||
| DnaA structure, function, and dynamics in the initiation at the chromosomal origin | Q37520018 | ||
| Multiple replication origins with diverse control mechanisms in Haloarcula hispanica | Q37606875 | ||
| DnaA, ORC, and Cdc6: similarity beyond the domains of life and diversity. | Q37687102 | ||
| Survey of the year 2008: applications of isothermal titration calorimetry | Q37705184 | ||
| Survey of the year 2009: applications of isothermal titration calorimetry | Q37820930 | ||
| A gold nanorod-based optical DNA biosensor for the diagnosis of pathogens | Q37852566 | ||
| Experimental strategies for the identification of DNA-binding proteins. | Q37970983 | ||
| Chromatin immunoprecipitation: advancing analysis of nuclear hormone signaling. | Q38032747 | ||
| Regulating DNA replication in bacteria | Q38087526 | ||
| Microfluidic electrophoretic mobility shift assays for quantitative biochemical analysis | Q38193000 | ||
| Chromosome replication origins: do we really need them? | Q38197136 | ||
| Highly sensitive detection of protein toxins by surface plasmon resonance with biotinylation-based inline atom transfer radical polymerization amplification. | Q43103145 | ||
| DNase I footprinting | Q43452318 | ||
| Enhancing sensitivity of surface plasmon resonance biosensors by functionalized gold nanoparticles: size matters | Q43597076 | ||
| DoriC: a database of oriC regions in bacterial genomes | Q44084887 | ||
| The box VII motif of Escherichia coli DnaA protein is required for DnaA oligomerization at the E. coli replication origin | Q45061770 | ||
| Determination of the minimum domain II size of Escherichia coli DnaA protein essential for cell viability. | Q45326966 | ||
| Monitoring RNA-ligand interactions using isothermal titration calorimetry. | Q45918088 | ||
| Simultaneous immunoblotting analysis with activity gel electrophoresis and 2-D gel electrophoresis | Q46045172 | ||
| The dnaB-dnaC replication protein complex of Escherichia coli. I. Formation and properties | Q46190248 | ||
| The dnaA protein of Escherichia coli. Abundance, improved purification, and membrane binding | Q46293074 | ||
| The Caulobacter crescentus chromosome replication origin evolved two classes of weak DnaA binding sites | Q46303108 | ||
| Insertional chromatin immunoprecipitation: a method for isolating specific genomic regions | Q46624783 | ||
| Roles for the AAA+ motifs of DnaA in the initiation of DNA replication. | Q46799079 | ||
| Characterization of drug-chitosan interaction by 1H NMR, FTIR and isothermal titration calorimetry | Q46828735 | ||
| Identification of two origins of replication in the single chromosome of the archaeon Sulfolobus solfataricus | Q47270717 | ||
| Identification of the chromosomal replication origin from Thermus thermophilus and its interaction with the replication initiator DnaA. | Q47856484 | ||
| Defining the thermodynamics of protein/DNA complexes and their components using micro-calorimetry | Q47981501 | ||
| High-affinity binding sites for the initiator protein DnaA on the chromosome of Escherichia coli | Q47986767 | ||
| Exact analysis of competition ligand binding by displacement isothermal titration calorimetry | Q48626784 | ||
| Electrophoretic mobility-shift assays. | Q50863962 | ||
| Isothermal titration calorimetry to determine association constants for high-affinity ligands. | Q51032511 | ||
| A versatile method to measure the binding to basic proteins by surface plasmon resonance. | Q51543263 | ||
| ChIP and Re-ChIP assays: investigating interactions between regulatory proteins, histone modifications, and the DNA sequences to which they bind. | Q51544179 | ||
| Genome-wide analysis of histone modifications by ChIP-on-chip. | Q51583125 | ||
| Biosensing with surface plasmon resonance — how it all started | Q51606792 | ||
| Replication dynamics of the yeast genome. | Q52053905 | ||
| Regulated degradation of chromosome replication proteins DnaA and CtrA in Caulobacter crescentus. | Q52058787 | ||
| Analysis of the DNA-binding domain of Escherichia coli DnaA protein. | Q52971588 | ||
| Bacterial pathogen surface plasmon resonance biosensor advanced by long range surface plasmons and magnetic nanoparticle assays. | Q54329458 | ||
| Structure and function of DnaA N-terminal domains: specific sites and mechanisms in inter-DnaA interaction and in DnaB helicase loading on oriC. | Q54443497 | ||
| Novel alleles of the Escherichia coli dnaA gene. | Q54558779 | ||
| Optical detection of single non-absorbing molecules using the surface plasmon resonance of a gold nanorod | Q57127646 | ||
| Surface Plasmon Resonance (SPR) Detection of Theophylline via Electropolymerized Molecularly Imprinted Polythiophenes | Q57347274 | ||
| Isothermal Titration Calorimetry: Thermodynamic Analysis of the Binding Thermograms of Molecular Recognition Events by Using Equilibrium Models | Q58022706 | ||
| Noncovalently Functionalized Monolayer Graphene for Sensitivity Enhancement of Surface Plasmon Resonance Immunosensors | Q58557307 | ||
| Bacterial Mode of Replication with Eukaryotic-Like Machinery in a Hyperthermophilic Archaeon | Q60134797 | ||
| Four chromosome replication origins in the archaeonPyrobaculum calidifontis | Q60864527 | ||
| Chromosome replication patterns in the hyperthermophilic euryarchaea Archaeoglobus fulgidus and Methanocaldococcus (Methanococcus) jannaschii | Q64127871 | ||
| The use of micrococcal nuclease as a probe for drug-binding sites on DNA | Q69052238 | ||
| Specific protein-DNA complexes: immunodetection of the protein component after gel electrophoresis and Western blotting | Q70242501 | ||
| The N-terminus promotes oligomerization of the Escherichia coli initiator protein DnaA | Q73129161 | ||
| Characterization of ricin heterogeneity by electrospray mass spectrometry, capillary electrophoresis, and resonant mirror | Q73466279 | ||
| Thermodynamics of DNA binding and condensation: isothermal titration calorimetry and electrostatic mechanism | Q73472056 | ||
| Isothermal titration calorimetry measurements of Ni(II) and Cu(II) binding to His, GlyGlyHis, HisGlyHis, and bovine serum albumin: a critical evaluation | Q73484601 | ||
| Major DNA replication initiation sites in the c-myc locus in human cells | Q73911952 | ||
| Simultaneous immunoblotting analysis with activity gel electrophoresis in a single polyacrylamide gel | Q74241860 | ||
| A proteomics approach for the identification of DNA binding activities observed in the electrophoretic mobility shift assay | Q74593098 | ||
| Colloidal Au-enhanced surface plasmon resonance immunosensing | Q77736272 | ||
| Genetic methods for characterizing the cis-acting components of yeast DNA replication origins | Q78151001 | ||
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 1049 | |
| P577 | publication date | 2015-09-30 | |
| P1433 | published in | Frontiers in Microbiology | Q27723481 |
| P1476 | title | Choosing a suitable method for the identification of replication origins in microbial genomes | |
| P478 | volume | 6 |
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| Q92130644 | gammaBOriS: Identification and Taxonomic Classification of Origins of Replication in Gammaproteobacteria using Motif-based Machine Learning |
| Q37376225 | iROS-gPseKNC: Predicting replication origin sites in DNA by incorporating dinucleotide position-specific propensity into general pseudo nucleotide composition |
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