Crystal structures of the reaction intermediate and its homologue of an extradiol-cleaving catecholic dioxygenase

scientific article

Crystal structures of the reaction intermediate and its homologue of an extradiol-cleaving catecholic dioxygenase is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1016/S0022-2836(02)00673-3
P698PubMed publication ID12206778
P5875ResearchGate publication ID11181658

P50authorGen SazakiQ57691231
P2093author name stringEiji Masai
Keisuke Sugimoto
Masao Fukuda
Nobuyuki Sato
Takamasa Nonaka
Tomoko Nishizaki
Toshiya Senda
Yoshitaka Uragami
Yoshito Takahashi
P2860cites workX-ray absorption spectroscopic studies of the Fe(II) active site of catechol 2,3-dioxygenase. Implications for the extradiol cleavage mechanismQ57943724
Rapid colorimetric micromethod for the quantitation of complexed iron in biological samplesQ68375729
PROCHECK: a program to check the stereochemical quality of protein structuresQ26778411
MOLSCRIPT: a program to produce both detailed and schematic plots of protein structuresQ26778412
An archetypical extradiol-cleaving catecholic dioxygenase: the crystal structure of catechol 2,3-dioxygenase (metapyrocatechase) from Ppseudomonas putida mt-2Q27618597
Crystal structure of an aromatic ring opening dioxygenase LigAB, a protocatechuate 4,5-dioxygenase, under aerobic conditionsQ27619532
Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenaseQ27631079
Crystal structure of the biphenyl-cleaving extradiol dioxygenase from a PCB-degrading pseudomonadQ27729302
Three-dimensional structures of free form and two substrate complexes of an extradiol ring-cleavage type dioxygenase, the BphC enzyme from Pseudomonas sp. strain KKS102Q27732711
Structure of isopenicillin N synthase complexed with substrate and the mechanism of penicillin formationQ27739531
Molecular basis for the stabilization and inhibition of 2, 3-dihydroxybiphenyl 1,2-dioxygenase by t-butanolQ27766353
Raster3D Version 2.0. A program for photorealistic molecular graphicsQ27860485
Free R value: a novel statistical quantity for assessing the accuracy of crystal structuresQ27860894
Automated refinement of protein modelsQ27860928
Refinement of macromolecular structures by the maximum-likelihood methodQ27861011
The CCP4 suite: programs for protein crystallographyQ27861090
Conformation of Polypeptides and ProteinsQ29617878
Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102.Q35424732
Catechol dioxygenases from Escherichia coli (MhpB) and Alcaligenes eutrophus (MpcI): sequence analysis and biochemical properties of a third family of extradiol dioxygenasesQ36812919
Exploring the catalytic mechanism of the extradiol catechol dioxygenasesQ41370014
Models for extradiol cleaving catechol dioxygenases: syntheses, structures, and reactivities of iron(II)-monoanionic catecholate complexesQ43634839
Extradiol oxidative cleavage of catechols by ferrous and ferric complexes of 1,4,7-triazacyclononane: insight into the mechanism of the extradiol catechol dioxygenasesQ43678118
Definitive evidence for monoanionic binding of 2,3-dihydroxybiphenyl to 2,3-dihydroxybiphenyl 1,2-dioxygenase from UV resonance Raman spectroscopy, UV/Vis absorption spectroscopy, and crystallography.Q43915522
Tuning the Regiospecificity of Cleavage in FeIII Catecholate Complexes: Tridentate Facial versus Meridional Ligands.Q52715064
Manganese(II)-dependent extradiol-cleaving catechol dioxygenase from Arthrobacter globiformis CM-2.Q54595371
Effects of a magnetic field on the growth rate of tetragonal lysozyme crystalsQ57725076
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectcrystal structureQ895901
P304page(s)621-36
P577publication date2002-08-23
P1433published inJournal of Molecular BiologyQ925779
P1476titleCrystal structures of the reaction intermediate and its homologue of an extradiol-cleaving catecholic dioxygenase
P478volume321

Reverse relations

cites work (P2860)
Q46610373A comparison of the reaction mechanisms of iron- and manganese-containing 2,3-HPCD: an important spin transition for manganese.
Q27666296A hyperactive cobalt-substituted extradiol-cleaving catechol dioxygenase
Q38194935A two-electron-shell game: intermediates of the extradiol-cleaving catechol dioxygenases
Q47338057Anaerobic crystallization of proteins.
Q47612525Catalysing new reactions during evolution: economy of residues and mechanism
Q34646005Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of an ASCH domain-containing protein from Zymomonas mobilis ZM4.
Q27644520Crystal Structures of Fe2+ Dioxygenase Superoxo, Alkylperoxo, and Bound Product Intermediates
Q36458279Crystal structure of 3-hydroxyanthranilic acid 3,4-dioxygenase from Saccharomyces cerevisiae: a special subgroup of the type III extradiol dioxygenases
Q36448209Crystallization and preliminary crystallographic analysis of 2-aminophenol 1,6-dioxygenase complexed with substrate and with an inhibitor
Q37420359Crystallization and preliminary crystallographic analysis of gallate dioxygenase DesB from Sphingobium sp. SYK-6.
Q33707299Crystallization and preliminary crystallographic analysis of manganese(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase from Bacillus sp. JF8.
Q36294298Crystallization and preliminary crystallographic analysis of the catechol 2,3-dioxygenase PheB from Bacillus stearothermophilus BR219
Q37096285Crystallographic comparison of manganese- and iron-dependent homoprotocatechuate 2,3-dioxygenases
Q43238964Determination of the active site of Sphingobium chlorophenolicum 2,6-dichlorohydroquinone dioxygenase (PcpA).
Q56532352Dioxygenase enzymes: catalytic mechanisms and chemical models
Q41341210Elucidation of the 4-hydroxyacetophenone catabolic pathway in Pseudomonas fluorescens ACB.
Q33344760High aromatic ring-cleavage diversity in birch rhizosphere: PAH treatment-specific changes of I.E.3 group extradiol dioxygenases and 16S rRNA bacterial communities in soil
Q24651198Hydroquinone dioxygenase from pseudomonas fluorescens ACB: a novel member of the family of nonheme-iron(II)-dependent dioxygenases
Q27652335Intermediate in the O−O Bond Cleavage Reaction of an Extradiol Dioxygenase † , ‡
Q53232358Iron(III) complexes of N2O and N3O donor ligands as functional models for catechol dioxygenase enzymes: ether oxygen coordination tunes the regioselectivity and reactivity.
Q44738450Iron(III) complexes of tripodal tetradentate 4N ligands as functional models for catechol dioxygenases: the electronic vs. steric effect on extradiol cleavage
Q37039723Mechanism of extradiol aromatic ring-cleaving dioxygenases
Q27682380Molecular mechanism of strict substrate specificity of an extradiol dioxygenase, DesB, derived from Sphingobium sp. SYK-6
Q46534033NO binding to naphthalene dioxygenase
Q92999490Nuclear Resonance Vibrational Spectroscopy Definition of O2 Intermediates in an Extradiol Dioxygenase: Correlation to Crystallography and Reactivity
Q36163738Spectroscopic studies of the anaerobic enzyme-substrate complex of catechol 1,2-dioxygenase
Q43090007Spectroscopic studies of the mononuclear non-heme Fe(II) enzyme FIH: second-sphere contributions to reactivity
Q36878482Structural Basis of the Enhanced Pollutant-Degrading Capabilities of an Engineered Biphenyl Dioxygenase
Q27676821Structural characterization of 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA) fromSphingobium chlorophenolicum, a new type of aromatic ring-cleavage enzyme
Q37477718Structural, spectroscopic, and electrochemical properties of nonheme Fe(II)-hydroquinonate complexes: synthetic models of hydroquinone dioxygenases.
Q27683665Structures of aminophenol dioxygenase in complex with intermediate, product and inhibitor
Q24304148Studies on the reaction of nitric oxide with the hypoxia-inducible factor prolyl hydroxylase domain 2 (EGLN1)
Q27664246Substrate Binding Mechanism of a Type I Extradiol Dioxygenase
Q36691958Substrate Promotes Productive Gas Binding in the α-Ketoglutarate-Dependent Oxygenase FIH.
Q27650648Swapping metals in Fe- and Mn-dependent dioxygenases: Evidence for oxygen activation without a change in metal redox state
Q33212392The 2-His-1-carboxylate facial triad: a versatile platform for dioxygen activation by mononuclear non-heme iron(II) enzymes.
Q36539821The ins and outs of ring-cleaving dioxygenases.
Q46746197The role of histidine 200 in MndD, the Mn(II)-dependent 3,4-dihydroxyphenylacetate 2,3-dioxygenase from Arthrobacter globiformis CM-2, a site-directed mutagenesis study
Q31109355The role of the conserved residues His-246, His-199, and Tyr-255 in the catalysis of catechol 2,3-dioxygenase from Pseudomonas stutzeri OX1.
Q53616375Theoretical study of the catalytic reaction mechanism of MndD.
Q37085698Versatility of biological non-heme Fe(II) centers in oxygen activation reactions.
Q27679094Visualizing the substrate-, superoxo-, alkylperoxo-, and product-bound states at the nonheme Fe(II) site of homogentisate dioxygenase

Search more.