| scholarly article | Q13442814 |
| P2093 | author name string | Gregory Prelich | |
| Marcie H Warner | |||
| Karen M Arndt | |||
| Yaya Chu | |||
| Rajna Simic | |||
| P2860 | cites work | Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression. | Q24537640 |
| Opposing roles for Set2 and yFACT in regulating TBP binding at promoters | Q24672606 | ||
| The role of chromatin during transcription | Q27860995 | ||
| Chromatin modifications and their function | Q27861067 | ||
| Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae | Q27861085 | ||
| Bur1 kinase is required for efficient transcription elongation by RNA polymerase II. | Q27930313 | ||
| Phosphorylation of the RNA polymerase II carboxy-terminal domain by the Bur1 cyclin-dependent kinase | Q27930777 | ||
| The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation | Q27930884 | ||
| Synthetic lethal interactions suggest a role for the Saccharomyces cerevisiae Rtf1 protein in transcription elongation | Q34610561 | ||
| Transcript elongation on a nucleoprotein template | Q34816702 | ||
| Eaf3 regulates the global pattern of histone acetylation in Saccharomyces cerevisiae | Q36222165 | ||
| Identification of RTF1, a novel gene important for TATA site selection by TATA box-binding protein in Saccharomyces cerevisiae | Q36570063 | ||
| Studies of the DNA binding properties of histone H4 amino terminus. Thermal denaturation studies reveal that acetylation markedly reduces the binding constant of the H4 "tail" to DNA. | Q38322516 | ||
| Set2-catalyzed methylation of histone H3 represses basal expression of GAL4 in Saccharomyces cerevisiae | Q39852847 | ||
| Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast | Q39895202 | ||
| Dimethylation of histone H3 at lysine 36 demarcates regulatory and nonregulatory chromatin genome-wide | Q42590205 | ||
| Isolation and characterization of two genes encoding yeast mating pheromone signaling elements: CDC72 and CDC73. | Q44457493 | ||
| Spatial distribution of di- and tri-methyl lysine 36 of histone H3 at active genes | Q46370672 | ||
| Functional redundancy and structural polymorphism in the large subunit of RNA polymerase II. | Q48338515 | ||
| Using chromatin immunoprecipitation to map cotranscriptional mRNA processing in Saccharomyces cerevisiae. | Q51598144 | ||
| SPT5, an essential gene important for normal transcription in Saccharomyces cerevisiae, encodes an acidic nuclear protein with a carboxy-terminal repeat | Q70234995 | ||
| RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach | Q27931237 | ||
| Transcription elongation factors repress transcription initiation from cryptic sites. | Q27931897 | ||
| Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription | Q27932406 | ||
| Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription | Q27932721 | ||
| Ctr9, Rtf1, and Leo1 are components of the Paf1/RNA polymerase II complex | Q27933282 | ||
| BUR1 and BUR2 encode a divergent cyclin-dependent kinase-cyclin complex important for transcription in vivo | Q27933584 | ||
| Identification and characterization of Elf1, a conserved transcription elongation factor in Saccharomyces cerevisiae | Q27933590 | ||
| The Paf1 complex physically and functionally associates with transcription elongation factors in vivo | Q27933848 | ||
| Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo | Q27934996 | ||
| The Paf1 complex has functions independent of actively transcribing RNA polymerase II. | Q27935078 | ||
| Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation | Q27935250 | ||
| Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex | Q27935315 | ||
| BUR kinase selectively regulates H3 K4 trimethylation and H2B ubiquitylation through recruitment of the PAF elongation complex | Q27936121 | ||
| Histone H2B ubiquitylation is associated with elongating RNA polymerase II | Q27936299 | ||
| The Spt4p subunit of yeast DSIF stimulates association of the Paf1 complex with elongating RNA polymerase II. | Q27937468 | ||
| Evidence that Spt2/Sin1, an HMG-like factor, plays roles in transcription elongation, chromatin structure, and genome stability in Saccharomyces cerevisiae | Q27938910 | ||
| Activation of CLN1 and CLN2 G1 cyclin gene expression by BCK2 | Q27939662 | ||
| The Rtf1 component of the Paf1 transcriptional elongation complex is required for ubiquitination of histone H2B. | Q27939794 | ||
| The Paf1 complex is essential for histone monoubiquitination by the Rad6-Bre1 complex, which signals for histone methylation by COMPASS and Dot1p | Q27940017 | ||
| Epitope tagging of yeast genes using a PCR-based strategy: more tags and improved practical routines | Q28131620 | ||
| Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription | Q28131686 | ||
| Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome | Q28300498 | ||
| Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae | Q29546523 | ||
| Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity | Q29555842 | ||
| Genome-wide map of nucleosome acetylation and methylation in yeast | Q29614525 | ||
| Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II | Q29614679 | ||
| Histone and chromatin cross-talk | Q29617179 | ||
| Alteration of nucleosome structure as a mechanism of transcriptional regulation | Q29620047 | ||
| A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation | Q30448402 | ||
| Mutations that suppress the deletion of an upstream activating sequence in yeast: involvement of a protein kinase and histone H3 in repressing transcription in vivo | Q33961833 | ||
| Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation | Q34154556 | ||
| The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II. | Q34168365 | ||
| The Bur1/Bur2 complex is required for histone H2B monoubiquitination by Rad6/Bre1 and histone methylation by COMPASS. | Q34470200 | ||
| The BUR1 cyclin-dependent protein kinase is required for the normal pattern of histone methylation by SET2. | Q34563159 | ||
| The Snf1 protein kinase and Sit4 protein phosphatase have opposing functions in regulating TATA-binding protein association with the Saccharomyces cerevisiae INO1 promoter | Q34572737 | ||
| P433 | issue | 22 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | histone H3-K36 trimethylation | Q21118251 |
| regulation of histone H3-K36 trimethylation | Q21118499 | ||
| positive regulation of histone H3-K36 trimethylation | Q22245414 | ||
| negative regulation of histone H3-K36 trimethylation | Q22245785 | ||
| Ctr9p YOL145C | Q27547265 | ||
| Cdc73p YLR418C | Q27549263 | ||
| Paf1p YBR279W | Q27552840 | ||
| P304 | page(s) | 4646-56 | |
| P577 | publication date | 2007-11-14 | |
| P1433 | published in | The EMBO Journal | Q1278554 |
| P1476 | title | Regulation of histone modification and cryptic transcription by the Bur1 and Paf1 complexes | |
| P478 | volume | 26 |
| Q30048904 | A Plasmodium falciparum transcriptional cyclin-dependent kinase-related kinase with a crucial role in parasite proliferation associates with histone deacetylase activity |
| Q64114109 | A conserved genetic interaction between Spt6 and Set2 regulates H3K36 methylation |
| Q33799865 | A nucleosome surface formed by histone H4, H2A, and H3 residues is needed for proper histone H3 Lys36 methylation, histone acetylation, and repression of cryptic transcription. |
| Q30429288 | An evolutionarily 'young' lysine residue in histone H3 attenuates transcriptional output in Saccharomyces cerevisiae |
| Q33808950 | An investigation of a role for U2 snRNP spliceosomal components in regulating transcription |
| Q30855405 | Architecture of the RNA polymerase II-Paf1C-TFIIS transcription elongation complex |
| Q42917894 | Asf1 can promote trimethylation of H3 K36 by Set2. |
| Q35656826 | Balancing acts of SRI and an auto-inhibitory domain specify Set2 function at transcribed chromatin |
| Q40951318 | Bidirectional terminators in Saccharomyces cerevisiae prevent cryptic transcription from invading neighboring genes |
| Q48212731 | Bidirectional terminators: an underestimated aspect of gene regulation |
| Q28585858 | CTR9/PAF1c regulates molecular lineage identity, histone H3K36 trimethylation and genomic imprinting during preimplantation development |
| Q42084597 | Casein kinase 2 associates with the yeast chromatin reassembly factor Spt2/Sin1 to regulate its function in the repression of spurious transcription |
| Q64884468 | Casein kinase 2 mediated phosphorylation of Spt6 modulates histone dynamics and regulates spurious transcription. |
| Q27677158 | Cdc73 Subunit of Paf1 Complex Contains C-terminal Ras-like Domain That Promotes Association of Paf1 Complex with Chromatin |
| Q48270215 | Cdc73 suppresses genome instability by mediating telomere homeostasis |
| Q89000005 | Cell Lysate Microarray for Mapping the Network of Genetic Regulators for Histone Marks |
| Q39975943 | Chemical-genomic dissection of the CTD code. |
| Q35748234 | Chromatin and transcription in yeast |
| Q38286121 | Chromatin modification by the RNA Polymerase II elongation complex |
| Q37303025 | Chromatin remodelers fine-tune H3K36me-directed deacetylation of neighbor nucleosomes by Rpd3S |
| Q28756588 | Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome |
| Q27937813 | Control of chromatin structure by spt6: different consequences in coding and regulatory regions |
| Q27932002 | Control of transcriptional elongation and cotranscriptional histone modification by the yeast BUR kinase substrate Spt5. |
| Q27681902 | Crystallographic analysis of the conserved C-terminal domain of transcription factor Cdc73 from Saccharomyces cerevisiae reveals a GTPase-like fold |
| Q27936392 | Dimethylation of H3K4 by Set1 recruits the Set3 histone deacetylase complex to 5' transcribed regions |
| Q27933085 | Direct interactions between the Paf1 complex and a cleavage and polyadenylation factor are revealed by dissociation of Paf1 from RNA polymerase II. |
| Q27931099 | Effects of the Paf1 complex and histone modifications on snoRNA 3'-end formation reveal broad and locus-specific regulation |
| Q47859224 | Emerging Insights into the Roles of the Paf1 Complex in Gene Regulation |
| Q34055678 | FACT, the Bur kinase pathway, and the histone co-repressor HirC have overlapping nucleosome-related roles in yeast transcription elongation |
| Q27937728 | Genetic identification of factors that modulate ribosomal DNA transcription in Saccharomyces cerevisiae. |
| Q33363084 | Genic and global functions for Paf1C in chromatin modification and gene expression in Arabidopsis |
| Q33406244 | Genome-wide analysis of factors affecting transcription elongation and DNA repair: a new role for PAF and Ccr4-not in transcription-coupled repair. |
| Q41461673 | Global regulation of heterochromatin spreading by Leo1. |
| Q33786471 | H2B ubiquitylation promotes RNA Pol II processivity via PAF1 and pTEFb |
| Q35133622 | Histone H2B ubiquitylation and H3 lysine 4 methylation prevent ectopic silencing of euchromatic loci important for the cellular response to heat. |
| Q43159915 | Histone H3 lysine 36 dimethylation (H3K36me2) is sufficient to recruit the Rpd3s histone deacetylase complex and to repress spurious transcription |
| Q27937315 | Histone H3K4 and K36 methylation, Chd1 and Rpd3S oppose the functions of Saccharomyces cerevisiae Spt4-Spt5 in transcription |
| Q24295252 | Human RNA polymerase II-association factor 1 (hPaf1/PD2) regulates histone methylation and chromatin remodeling in pancreatic cancer |
| Q36783671 | IL-1β-specific recruitment of GCN5 histone acetyltransferase induces the release of PAF1 from chromatin for the de-repression of inflammatory response genes |
| Q35065497 | Identification of a role for histone H2B ubiquitylation in noncoding RNA 3'-end formation through mutational analysis of Rtf1 in Saccharomyces cerevisiae |
| Q64054525 | Iws1 and Spt6 Regulate Trimethylation of Histone H3 on Lysine 36 through Akt Signaling and are Essential for Mouse Embryonic Genome Activation |
| Q27935084 | Leo1 Subunit of the Yeast Paf1 Complex Binds RNA and Contributes to Complex Recruitment* |
| Q37629619 | Life without RNAi: noncoding RNAs and their functions in Saccharomyces cerevisiae |
| Q36208613 | Multivalent di-nucleosome recognition enables the Rpd3S histone deacetylase complex to tolerate decreased H3K36 methylation levels |
| Q37158405 | Mutants of the Paf1 complex alter phenotypic expression of the yeast prion [PSI+] |
| Q48150064 | Opposing functions of H2BK120 ubiquitylation and H3K79 methylation in the regulation of pluripotency by the Paf1 complex |
| Q42598151 | Paf1 restricts Gcn4 occupancy and antisense transcription at the ARG1 promoter |
| Q34118607 | Phosphorylated Pol II CTD Recruits Multiple HDACs, Including Rpd3C(S), for Methylation-Dependent Deacetylation of ORF Nucleosomes |
| Q27935065 | Phosphorylation of the Pol II CTD by KIN28 enhances BUR1/BUR2 recruitment and Ser2 CTD phosphorylation near promoters |
| Q27932580 | Pol II CTD kinases Bur1 and Kin28 promote Spt5 CTR-independent recruitment of Paf1 complex |
| Q37113864 | Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals |
| Q35728265 | RNA polymerase II carboxyl-terminal domain phosphorylation regulates protein stability of the Set2 methyltransferase and histone H3 di- and trimethylation at lysine 36 |
| Q27939763 | Roles for Ctk1 and Spt6 in regulating the different methylation states of histone H3 lysine 36. |
| Q91996384 | Selective Kinase Inhibition Shows That Bur1 (Cdk9) Phosphorylates the Rpb1 Linker In Vivo |
| Q37158054 | Set2 mediated H3 lysine 36 methylation: regulation of transcription elongation and implications in organismal development |
| Q37452562 | Set2-dependent K36 methylation is regulated by novel intratail interactions within H3 |
| Q32874823 | Setd5 is essential for mammalian development and the co-transcriptional regulation of histone acetylation |
| Q39225775 | Shaping the cellular landscape with Set2/SETD2 methylation |
| Q50930184 | Small RNA-Guided Transcriptional Gene Activation (RNAa) in Mammalian Cells. |
| Q91753027 | Spt5 modulates cotranscriptional spliceosome assembly in Saccharomyces cerevisiae |
| Q37469459 | Spt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast |
| Q27680183 | Structural basis for Spt5-mediated recruitment of the Paf1 complex to chromatin |
| Q27679957 | Structural insights into Paf1 complex assembly and histone binding |
| Q44424702 | The Histone Modification Domain of Paf1 Complex Subunit Rtf1 Directly Stimulates H2B Ubiquitylation through an Interaction with Rad6. |
| Q35079880 | The PAF complex and Prf1/Rtf1 delineate distinct Cdk9-dependent pathways regulating transcription elongation in fission yeast |
| Q42782209 | The Paf1 complex represses ARG1 transcription in Saccharomyces cerevisiae by promoting histone modifications |
| Q38627903 | The Paf1 complex represses SER3 transcription in Saccharomyces cerevisiae by facilitating intergenic transcription-dependent nucleosome occupancy of the SER3 promoter |
| Q37671309 | The Paf1 complex: platform or player in RNA polymerase II transcription? |
| Q35811839 | The Roles of the Paf1 Complex and Associated Histone Modifications in Regulating Gene Expression |
| Q28749801 | The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors |
| Q36522035 | The many roles of the conserved eukaryotic Paf1 complex in regulating transcription, histone modifications, and disease states |
| Q42572146 | The recruitment of the Saccharomyces cerevisiae Paf1 complex to active genes requires a domain of Rtf1 that directly interacts with the Spt4-Spt5 complex |
| Q40648243 | The replication-independent histone H3-H4 chaperones HIR, ASF1, and RTT106 co-operate to maintain promoter fidelity |
| Q24315774 | The tumor suppressor Cdc73 functionally associates with CPSF and CstF 3' mRNA processing factors |
| Q43248512 | The yeast cap binding complex modulates transcription factor recruitment and establishes proper histone H3K36 trimethylation during active transcription |
| Q39042789 | Transcription factors that influence RNA polymerases I and II: To what extent is mechanism of action conserved? |
| Q38043829 | Transcription-associated histone modifications and cryptic transcription |
| Q37672319 | Understanding the language of Lys36 methylation at histone H3. |
| Q42705199 | Widespread remodeling of mid-coding sequence nucleosomes by Isw1. |
| Q34515078 | saRNA-guided Ago2 targets the RITA complex to promoters to stimulate transcription |
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