Structural Maturation of HIV-1 Reverse Transcriptase-A Metamorphic Solution to Genomic Instability

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Structural Maturation of HIV-1 Reverse Transcriptase-A Metamorphic Solution to Genomic Instability is …
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review articleQ7318358
scholarly articleQ13442814

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P356DOI10.3390/V8100260
P3181OpenCitations bibliographic resource ID3319144
P932PMC publication ID5086598
P698PubMed publication ID27690082

P2093author name stringRobert London
P2860cites workInstability and decay of the primary structure of DNAQ22122361
Analysis of the nucleic acid annealing activities of nucleocapsid protein from HIV-1.Q40394716
The retroviral enzymesQ40394916
Identification of amino acid residues in the human immunodeficiency virus type-1 reverse transcriptase tryptophan-repeat motif that are required for subunit interaction using infectious virionsQ40422838
Kinetic studies of human immunodeficiency virus type 1 protease and its active-site hydrogen bond mutant A28SQ41145700
Inhibition of human immunodeficiency virus type 1 reverse transcriptase dimerization using synthetic peptides derived from the connection domainQ41468615
Homodimerization of the p51 subunit of HIV-1 reverse transcriptase.Q41500267
Human immunodeficiency virus type 1 (HIV-1) recombinant reverse transcriptase. Asymmetry in p66 subunits of the p66/p66 homodimerQ41661545
In vitro resistance selection with doravirine (MK-1439), a novel nonnucleoside reverse transcriptase inhibitor with distinct mutation development pathwaysQ41668874
Isolated HIV-1 core is active for reverse transcription.Q41956340
Kinetics of association and dissociation of HIV-1 reverse transcriptase subunitsQ41970869
Characterization of novel non-nucleoside reverse transcriptase (RT) inhibitor resistance mutations at residues 132 and 135 in the 51 kDa subunit of HIV-1 RT.Q42179793
Evidence of interactions between the nucleocapsid protein NCp7 and the reverse transcriptase of HIV-1.Q42598855
Temperature-dependent equilibrium between the open and closed conformation of the p66 subunit of HIV-1 reverse transcriptase revealed by site-directed spin labelling.Q42632779
Human immunodeficiency virus type-1 reverse transcriptase and ribonuclease H as substrates of the viral proteaseQ42842599
Analysis of the backbone dynamics of the ribonuclease H domain of the human immunodeficiency virus reverse transcriptase using 15N relaxation measurementsQ43753343
Insertion of a peptide from MuLV RT into the connection subdomain of HIV-1 RT results in a functionally active chimeric enzyme in monomeric conformationQ43804442
Glutamic residue 438 within the protease-sensitive subdomain of HIV-1 reverse transcriptase is critical for heterodimer processing in viral particles.Q43908619
Stabilization and activation of recombinant human immunodeficiency virus-1 reverse transcriptase-P66Q43940745
Destabilization of the HIV-1 reverse transcriptase dimer upon interaction with N-acyl hydrazone inhibitorsQ44072183
A reexamination of the propensities of amino acids towards a particular secondary structure: classification of amino acids based on their chemical structure.Q44529130
Cleavage of the HIV-1 p66 reverse transcriptase/RNase H by the p9 protease in vitro generates active p15 RNase HQ44702825
Proteolytic processing of an HIV-1 pol polyprotein precursor: insights into the mechanism of reverse transcriptase p66/p51 heterodimer formationQ44926187
Backbone dynamics of the RNase H domain of HIV-1 reverse transcriptaseQ44983725
Error thresholds and the constraints to RNA virus evolutionQ44997148
Impact of residues in the nonnucleoside reverse transcriptase inhibitor binding pocket on HIV-1 reverse transcriptase heterodimer stabilityQ45001878
Proteolytic release and crystallization of the RNase H domain of human immunodeficiency virus type 1 reverse transcriptaseQ45218226
Efavirenz enhances the proteolytic processing of an HIV-1 pol polyprotein precursor and reverse transcriptase homodimer formationQ45218379
NNRTI-selected mutations at codon 190 of human immunodeficiency virus type 1 reverse transcriptase decrease susceptibility to stavudine and zidovudine.Q45401764
Analysis of amino acids in the beta7-beta8 loop of human immunodeficiency virus type 1 reverse transcriptase for their role in virus replicationQ45409561
In vitro selection of mutations in human immunodeficiency virus type 1 reverse transcriptase that confer resistance to capravirine, a novel nonnucleoside reverse transcriptase inhibitorQ45419921
The N137 and P140 amino acids in the p51 and the P95 amino acid in the p66 subunit of human immunodeficiency virus type 1 (HIV-1) reverse transcriptase are instrumental to maintain catalytic activity and to design new classes of anti-HIV-1 drugsQ45475260
Dimerization of human immunodeficiency virus type 1 reverse transcriptase. A target for chemotherapeutic intervention.Q45860281
Purification and characterization of heterodimeric human immunodeficiency virus type 1 (HIV-1) reverse transcriptase produced by in vitro processing of p66 with recombinant HIV-1 proteaseQ45873021
A new generation of peptide-based inhibitors targeting HIV-1 reverse transcriptase conformational flexibilityQ46295068
Characterization of ribosomal frameshifting in HIV-1 gag-pol expressionQ46573916
Effects of efavirenz binding on the subunit equilibria of HIV-1 reverse transcriptaseQ46964863
A captured folding intermediate involved in dimerization and domain-swapping of GB1.Q47311456
Biochemistry. Metamorphic proteinsQ47610431
Catalytic properties of the reverse transcriptases of human immunodeficiency viruses type 1 and type 2.Q54298285
The accuracy of reverse transcriptase from HIV-1.Q54738770
Roles of Conformational and Positional Adaptability in Structure-Based Design of TMC125-R165335 (Etravirine) and Related Non-nucleoside Reverse Transcriptase Inhibitors That Are Highly Potent and Effective against Wild-Type and Drug-Resistant HIV-1 VQ57480046
Kinetics of RNA Degradation by Specific Base Catalysis of Transesterification Involving the 2‘-Hydroxyl GroupQ58001473
Kinetic Analysis of Four HIV-1 Reverse Transcriptase Enzymes Mutated in the Primer Grip Region of p66Q59663006
Characterization of the dimerization process of HIV-1 reverse transcriptase heterodimer using intrinsic protein fluorescenceQ59663050
Relationship between enzyme activity and dimeric structure of recombinant HIV-1 reverse transcriptaseQ62898923
Structure/function studies of HIV-1 reverse transcriptase: Dimerization-defective mutant L289KQ72105897
Factors affecting the dimerization of the p66 form of HIV-1 reverse transcriptaseQ73569162
Structure--function relationships in HIV-1 Nef.Q24522550
Structure of HIV-2 reverse transcriptase at 2.35-A resolution and the mechanism of resistance to non-nucleoside inhibitors.Q24540388
Crystal structure of HIV-1 reverse transcriptase in complex with a polypurine tract RNA:DNAQ24545723
The human immunodeficiency virus type 1 ribosomal frameshifting site is an invariant sequence determinant and an important target for antiviral therapyQ24607992
HIV-1 frameshift efficiency is primarily determined by the stability of base pairs positioned at the mRNA entrance channel of the ribosomeQ24628718
Retroviral intasome assembly and inhibition of DNA strand transferQ24629737
VADAR: a web server for quantitative evaluation of protein structure qualityQ24672199
Insertion of a small peptide of six amino acids into the beta7-beta8 loop of the p51 subunit of HIV-1 reverse transcriptase perturbs the heterodimer and affects its activitiesQ24796883
Processing sites in the human immunodeficiency virus type 1 (HIV-1) Gag-Pro-Pol precursor are cleaved by the viral protease at different ratesQ24812175
Fusion of mature HIV-1 particles leads to complete release of a gag-GFP-based content marker and raises the intraviral pHQ27309923
The evolution of genome compression and genomic novelty in RNA virusesQ27481078
Structural basis for the resilience of efavirenz (DMP-266) to drug resistance mutations in HIV-1 reverse transcriptaseQ27628304
Solution structure of the RNase H domain of the HIV-1 reverse transcriptase in the presence of magnesiumQ27640327
Snapshots of a Y-family DNA polymerase in replication: substrate-induced conformational transitions and implications for fidelity of Dpo4Q27650489
Structure of HIV-1 Reverse Transcriptase with the Inhibitor β-Thujaplicinol Bound at the RNase H Active SiteQ27658584
Visualizing the molecular interactions of a nucleotide analog, GS-9148, with HIV-1 reverse transcriptase-DNA complexQ27659857
Crystal Structure of tert -Butyldimethylsilyl-spiroaminooxathioledioxide-thymine (TSAO-T) in Complex with HIV-1 Reverse Transcriptase (RT) Redefines the Elastic Limits of the Non-nucleoside Inhibitor-Binding PocketQ27667348
HIV-1 reverse transcriptase complex with DNA and nevirapine reveals non-nucleoside inhibition mechanismQ27676835
Selective unfolding of one Ribonuclease H domain of HIV reverse transcriptase is linked to homodimer formationQ27681926
Conserved folding in retroviral proteases: crystal structure of a synthetic HIV-1 proteaseQ27696384
Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanismQ27729370
2.2 A resolution structure of the amino-terminal half of HIV-1 reverse transcriptase (fingers and palm subdomains)Q27729416
Mechanism of inhibition of HIV-1 reverse transcriptase by non-nucleoside inhibitorsQ27729428
Structure of unliganded HIV-1 reverse transcriptase at 2.7 A resolution: implications of conformational changes for polymerization and inhibition mechanismsQ27733392
Structure of a covalently trapped catalytic complex of HIV-1 reverse transcriptase: implications for drug resistanceQ27766086
Structure and functional implications of the polymerase active site region in a complex of HIV-1 RT with a double-stranded DNA template-primer and an antibody Fab fragment at 2.8 A resolutionQ27766103
Empirical Predictions of Protein ConformationQ28300310
Human immunodeficiency virus type 1 reverse transcriptase dimer destabilization by 1-[Spiro[4"-amino-2",2" -dioxo-1",2" -oxathiole-5",3'-[2', 5'-bis-O-(tert-butyldimethylsilyl)-beta-D-ribofuranosyl]]]-3-ethylthy mineQ28370846
Preclinical evaluation of HBY 097, a new nonnucleoside reverse transcriptase inhibitor of human immunodeficiency virus type 1 replicationQ28378825
S-1153 inhibits replication of known drug-resistant strains of human immunodeficiency virus type 1Q28379544
Potent nonnucleoside reverse transcriptase inhibitors target HIV-1 Gag-PolQ28469069
Conservation patterns of HIV-1 RT connection and RNase H domains: identification of new mutations in NRTI-treated patientsQ28472255
Gag-Pol processing during HIV-1 virion maturation: a systems biology approachQ28533696
Crystal structure at 3.5 A resolution of HIV-1 reverse transcriptase complexed with an inhibitorQ29547710
HIV-1 accessory proteins--ensuring viral survival in a hostile environmentQ29619538
Vinylogous ureas as a novel class of inhibitors of reverse transcriptase-associated ribonuclease H activityQ33373484
An open and closed case for all polymerases.Q33658307
The mutation T477A in HIV-1 reverse transcriptase (RT) restores normal proteolytic processing of RT in virus with Gag-Pol mutated in the p51-RNH cleavage siteQ33698586
Genotypic correlates of phenotypic resistance to efavirenz in virus isolates from patients failing nonnucleoside reverse transcriptase inhibitor therapyQ33851627
Structure and function of HIV-1 reverse transcriptase: molecular mechanisms of polymerization and inhibitionQ33896402
Mutations that abrogate human immunodeficiency virus type 1 reverse transcriptase dimerization affect maturation of the reverse transcriptase heterodimerQ33911895
High sequence conservation of human immunodeficiency virus type 1 reverse transcriptase under drug pressure despite the continuous appearance of mutationsQ33911980
Virion instability of human immunodeficiency virus type 1 reverse transcriptase (RT) mutated in the protease cleavage site between RT p51 and the RT RNase H domainQ33987368
Basics of the virology of HIV-1 and its replicationQ33990416
Proteins that switch foldsQ34086494
Structure-activity analysis of vinylogous urea inhibitors of human immunodeficiency virus-encoded ribonuclease H.Q34108782
Prediction of beta-turnsQ34254354
Subunit-specific analysis of the human immunodeficiency virus type 1 reverse transcriptase in vivo.Q34438247
Protein folding and three-dimensional domain swapping: a strained relationship?Q34525881
Structure-activity relationships of [2',5'-bis-O-(tert-butyldimethylsilyl)-beta-D-ribofuranosyl]- 3'-spiro-5' '-(4' '-amino-1' ',2' '-oxathiole-2' ',2' '-dioxide)thymine derivatives as inhibitors of HIV-1 reverse transcriptase dimerization.Q34553499
Crystal structures of clinically relevant Lys103Asn/Tyr181Cys double mutant HIV-1 reverse transcriptase in complexes with ATP and non-nucleoside inhibitor HBY 097.Q34575882
Crystal structure of the ribonuclease H domain of HIV-1 reverse transcriptaseQ34577497
Novel HIV-1 reverse transcriptase inhibitors.Q34756615
Modulation of the oligomeric structures of HIV-1 retroviral enzymes by synthetic peptides and small moleculesQ34976859
The unfolding story of three-dimensional domain swapping.Q35080182
Highly active antiretroviral therapies are effective against HIV-1 cell-to-cell transmissionQ35105679
Conformation and dynamics of the Gag polyprotein of the human immunodeficiency virus 1 studied by NMR spectroscopy.Q35212464
A uniquely prevalent nonnucleoside reverse transcriptase inhibitor resistance mutation in Russian subtype A HIV-1 virusesQ35370552
Mitochondrial toxicity of nrti antiviral drugs: an integrated cellular perspectiveQ35550221
Structural basis of asymmetry in the human immunodeficiency virus type 1 reverse transcriptase heterodimerQ35623899
The p66 immature precursor of HIV-1 reverse transcriptase.Q35638699
Asymmetric conformational maturation of HIV-1 reverse transcriptaseQ35675915
Mutagenesis of human immunodeficiency virus reverse transcriptase p51 subunit defines residues contributing to vinylogous urea inhibition of ribonuclease H activityQ35763192
Analysis of mutations and suppressors affecting interactions between the subunits of the HIV type 1 reverse transcriptaseQ35769639
The HIV-1 reverse transcriptase mutants G190S and G190A, which confer resistance to non-nucleoside reverse transcriptase inhibitors, demonstrate reductions in RNase H activity and DNA synthesis from tRNA(Lys, 3) that correlate with reductions in repQ35794241
The two biological activities of human immunodeficiency virus type 1 Vpu protein involve two separable structural domains.Q35854362
Structural integrity of the ribonuclease H domain in HIV-1 reverse transcriptase.Q35875958
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Mutations in human immunodeficiency virus type 1 RNase H primer grip enhance 3'-azido-3'-deoxythymidine resistanceQ35914346
Lethal mutagenesis of HIV.Q36008905
Antiviral activity and in vitro mutation development pathways of MK-6186, a novel nonnucleoside reverse transcriptase inhibitorQ36018893
Characterization of a folding intermediate from HIV-1 ribonuclease HQ36280664
Nonnucleoside reverse transcriptase inhibitors are chemical enhancers of dimerization of the HIV type 1 reverse transcriptaseQ36297904
Structural basis of the allosteric inhibitor interaction on the HIV-1 reverse transcriptase RNase H domain.Q36300994
Metal and ligand binding to the HIV-RNase H active site are remotely monitored by Ile556Q36368801
TSAO derivatives, inhibitors of HIV-1 reverse transcriptase dimerization: recent progress.Q36489304
Unfolding the HIV-1 reverse transcriptase RNase H domain--how to lose a molecular tug-of-warQ36627970
HIV reverse transcriptase structure-function relationshipsQ36657162
Efavirenz enhances HIV-1 gag processing at the plasma membrane through Gag-Pol dimerizationQ36667876
Selection of nonnucleoside reverse transcriptase inhibitor-associated mutations in HIV-1 subtype C: evidence of etravirine cross-resistanceQ36799767
Protein-mediated antagonism between HIV reverse transcriptase ligands nevirapine and MgATP.Q36939750
Mechanisms of resistance to nucleoside analogue inhibitors of HIV-1 reverse transcriptase.Q37083800
Nucleocapsid protein function in early infection processesQ37086413
Exploiting drug-resistant enzymes as tools to identify thienopyrimidinone inhibitors of human immunodeficiency virus reverse transcriptase-associated ribonuclease H.Q37432679
Therapeutic potential of peptide motifs against HIV-1 reverse transcriptase and integraseQ37550911
Formation of the tRNALys packaging complex in HIV-1.Q37633035
Implications of 3D domain swapping for protein folding, misfolding and function.Q38040726
Dimerization kinetics of HIV-1 and HIV-2 reverse transcriptase: a two step processQ38298949
Buried surface analysis of HIV-1 reverse transcriptase p66/p51 heterodimer and its interaction with dsDNA template/primerQ38307848
Alterations to the primer grip of p66 HIV-1 reverse transcriptase and their consequences for template-primer utilizationQ38355667
Role of residues in the tryptophan repeat motif for HIV-1 reverse transcriptase dimerizationQ38358165
Conformational landscape of the human immunodeficiency virus type 1 reverse transcriptase non-nucleoside inhibitor binding pocket: lessons for inhibitor design from a cluster analysis of many crystal structures.Q38587299
Why Do We Need New Drug Classes for HIV Treatment and Prevention?Q38605487
MAPPIT (MAmmalian Protein-Protein Interaction Trap) as a tool to study HIV reverse transcriptase dimerization in intact human cellsQ39959363
Myristoylation is required for human immunodeficiency virus type 1 Gag-Gag multimerization in mammalian cellsQ40078275
Locations of anti-AIDS drug binding sites and resistance mutations in the three-dimensional structure of HIV-1 reverse transcriptase. Implications for mechanisms of drug inhibition and resistanceQ40394618
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue10
P407language of work or nameEnglishQ1860
P304page(s)260
P577publication date2016-09-27
P1433published inVirusesQ7935305
P1476titleStructural Maturation of HIV-1 Reverse Transcriptase-A Metamorphic Solution to Genomic Instability
P478volume8

Reverse relations

cites work (P2860)
Q92675301Binding interface and impact on protease cleavage for an RNA aptamer to HIV-1 reverse transcriptase
Q38623200Identification of drivers for the metamorphic transition of HIV-1 reverse transcriptase
Q59359510Molecular Docking Studies of HIV-1 Resistance to Reverse Transcriptase Inhibitors: Mini-Review
Q92431103Spatial domain organization in the HIV-1 reverse transcriptase p66 homodimer precursor probed by double electron-electron resonance EPR
Q39065035Viral reverse transcriptases.

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