A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure (scientific article published on July 12, 1991)

cites work (P2860)

Q59047553	1,4-Dihydropyridine Calcium Channel Blockers: Homology Modeling of the Receptor and Assessment of Structure Activity Relationship
Q27729812	2.1 A resolution refined structure of a TATA box-binding protein (TBP)
Q34189475	3D-1D threading methods for protein fold recognition
Q41973906	A "fuzzy"-logic language for encoding multiple physical traits in biomolecules
Q36612497	A Bioinformatics Approach for Homology Modeling and Binding Site Identification of Triosephosphate Isomerase from Plasmodium falciparum 3D7.
Q35930905	A Central Nervous System-Dependent Intron-Embedded Gene Encodes a Novel Murine Fyn Binding Protein
Q35737316	A Deluge of Complex Repeats: The Solanum Genome
Q93216844	A Highly Glucose Tolerant ß-Glucosidase from Malbranchea pulchella (MpBg3) Enables Cellulose Saccharification
Q57845086	A Human RNA Viral Cysteine Proteinase That Depends upon a Unique Zn2+-binding Finger Connecting the Two Domains of a Papain-like Fold
Q30361500	A Parallel Framework for Multipoint Spiral Search in ab Initio Protein Structure Prediction.
Q55344963	A case of Raine syndrome presenting with facial dysmorphy and review of literature.
Q39940781	A chemotactic signaling surface on CheY defined by suppressors of flagellar switch mutations
Q30353463	A comparative assessment and analysis of 20 representative sequence alignment methods for protein structure prediction.
Q60221062	A comparative proteomic approach to analyse structure, function and evolution of rice chitinases: a step towards increasing plant fungal resistance
Q30391442	A comparison of different functions for predicted protein model quality assessment
Q24800237	A comprehensive analysis of 40 blind protein structure predictions
Q40169420	A comprehensive immunoinformatics and target site study revealed the corner-stone toward Chikungunya virus treatment
Q47741777	A computational combinatorial approach identifies a protein inhibitor of superoxide dismutase 1 misfolding, aggregation, and cytotoxicity.
Q37297081	A computational modeling and molecular dynamics study of the Michaelis complex of human protein Z-dependent protease inhibitor (ZPI) and factor Xa (FXa).
Q37519863	A contact energy function considering residue hydrophobic environment and its application in protein fold recognition
Q40907240	A contact scoring matrix for qualitative prediction of change in folding of alpha-helices in globular proteins caused by a mutation
Q42841967	A detailed consideration of a principal domain of vertebrate fibrinogen and its relatives
Q30328397	A distance-dependent atomic knowledge-based potential for improved protein structure selection.
Q42041995	A dynamical approach to protein folding
Q52308727	A flexible motif search technique based on generalized profiles.
Q64120556	A global map of the protein shape universe
Q39715813	A globin domain in a neuronal transmembrane receptor of Caenorhabditis elegans and Ascaris suum: molecular modeling and functional properties
Q41948325	A histidine switch in hemagglutinin-neuraminidase triggers paramyxovirus-cell membrane fusion
Q30353437	A machine learning information retrieval approach to protein fold recognition.
Q41840920	A molecular model of human Lysyl Oxidase (LOX) with optimal copper orientation in the catalytic cavity for induced fit docking studies with potential modulators
Q34313940	A naturally occurring mutation of the opsin gene (T4R) in dogs affects glycosylation and stability of the G protein-coupled receptor
Q30401235	A new approach to assess and predict the functional roles of proteins across all known structures
Q28270933	A new approach to protein fold recognition
Q30417862	A new computational model for protein folding based on atomic solvation
Q24634970	A new generation of crystallographic validation tools for the protein data bank
Q30353364	A new generation of statistical potentials for proteins.
Q55035962	A new insight into identification of in silico analysis of natural compounds targeting GPR120.
Q33412232	A new prediction strategy for long local protein structures using an original description
Q73911162	A new triple-stranded alpha-helical bundle in solution: the assembling of the cytosolic tail of MHC-associated invariant chain
Q24539234	A novel GCAP1 missense mutation (L151F) in a large family with autosomal dominant cone-rod dystrophy (adCORD)
Q33303404	A novel alpha(v)beta (3)-blocking disintegrin containing the RGD motive, DisBa-01, inhibits bFGF-induced angiogenesis and melanoma metastasis
Q43057818	A novel approach to structural alignment using realistic structural and environmental information
Q38500589	A novel benzodioxole-containing inhibitor of Toxoplasma gondii growth alters the parasite cell cycle.
Q51644243	A novel measure characterized by a polar energy surface approximation for recognition and classification of transmembrane protein structures.
Q35951744	A novel molecular dynamics approach to evaluate the effect of phosphorylation on multimeric protein interface: the αB-Crystallin case study.
Q42181514	A novel phospholipase A2 (D49) from the venom of the Crotalus oreganus abyssus (North American Grand canyon rattlesnake).
Q30155102	A novel transport mechanism for MOMP in Chlamydophila pneumoniae and its putative role in immune-therapy
Q71460525	A partial model of the erythropoietin receptor complex
Q52317567	A predictor of transmembrane alpha-helix domains of proteins based on neural networks.
Q41856130	A procedure for the automatic determination of hydrophobic cores in protein structures
Q90303431	A promising drug candidate for the treatment of glaucoma based on a P2Y6-receptor agonist
Q30419165	A quantitative methodology for the de novo design of proteins
Q51772530	A reexamination of correlations of amino acids with particular secondary structures.
Q44529130	A reexamination of the propensities of amino acids towards a particular secondary structure: classification of amino acids based on their chemical structure.
Q50631178	A role for the MHC class I-like Mill molecules in nutrient metabolism and wound healing.
Q34628996	A role for the Parkinson's disease protein DJ-1 as a chaperone and antioxidant in the anhydrobiotic nematode Panagrolaimus superbus
Q30405185	A sampling-based method for ranking protein structural models by integrating multiple scores and features
Q36279023	A simple and fast approach to prediction of protein secondary structure from multiply aligned sequences with accuracy above 70%.
Q47136041	A sparse autoencoder-based deep neural network for protein solvent accessibility and contact number prediction
Q34950456	A sperm-plasma β-N-acetyl-D-hexosaminidase interacting with a Chitinolytic β-N-Acetyl-D-hexosaminidase in insect molting fluid
Q35667592	A statistical mechanical method to optimize energy functions for protein folding
Q28709657	A structural bioinformatics approach for identifying proteins predisposed to bind linear epitopes on pre-selected target proteins
Q42843731	A structural model for the prostate disease marker, human prostate-specific antigen
Q52315099	A study of combined structure/sequence profiles.
Q34700989	A study of the mechanism of the chaperone-like function of an scFv of human creatine kinase by computer simulation
Q45962868	AUTO-MUTE: web-based tools for predicting stability changes in proteins due to single amino acid replacements.
Q30431212	Ab Initio structure prediction for Escherichia coli: towards genome-wide protein structure modeling and fold assignment
Q33284072	Ab initio modeling of small proteins by iterative TASSER simulations
Q52043616	Ab initio prediction of helical segments in polypeptides.
Q30400320	Absolute quality evaluation of protein model structures using statistical potentials with respect to the native and reference states.
Q33711003	Accurate and efficient gp120 V3 loop structure based models for the determination of HIV-1 co-receptor usage
Q30370720	Accurate prediction of stability changes in protein mutants by combining machine learning with structure based computational mutagenesis.
Q39981341	Acetylcholine promotes binding of α-conotoxin MII at α3 β2 nicotinic acetylcholine receptors.
Q41822184	Active site model for gamma-aminobutyrate aminotransferase explains substrate specificity and inhibitor reactivities
Q57492347	Adaptive Steered Molecular Dynamics Combined With Protein Structure Networks Revealing the Mechanism of Y68I/G109P Mutations That Enhance the Catalytic Activity of D-psicose 3-Epimerase From
Q35874472	Adaptive evolution in the toxicity of a spider's venom enzymes.
Q22241408	Advances in Homology Protein Structure Modeling
Q30426879	Advances in comparative protein-structure modelling
Q92648202	Advances in protein structure prediction and design
Q42846296	Alignment algorithm for homology modeling and threading
Q33179040	Alignment of a sparse protein signature with protein sequences: application to fold prediction for three small globulins.
Q30341029	Alignment of protein sequences by their profiles
Q33991060	Alpha-conotoxin AuIB isomers exhibit distinct inhibitory mechanisms and differential sensitivity to stoichiometry of alpha3beta4 nicotinic acetylcholine receptors.
Q79259224	Amyloid fibril structure modeling using protein threading and molecular dynamics simulations
Q29615894	An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins
Q30395954	An Evolution-Based Approach to De Novo Protein Design.
Q30374826	An Improved Integration of Template-Based and Template-Free Protein Structure Modeling Methods and its Assessment in CASP11
Q35352340	An algorithm to generate low-resolution protein tertiary structures from knowledge of secondary structure
Q40688036	An analysis of packing in the protein folding problem
Q27634967	An ancestral nuclear protein assembly: Crystal structure of theMethanopyrus kandlerihistone
Q24795403	An approach to large scale identification of non-obvious structural similarities between proteins
Q30351317	An atomic environment potential for use in protein structure prediction.
Q42842890	An automated method for modeling proteins on known templates using distance geometry
Q58451373	An automatic homology modeling method consisting of database searches and simulated annealing
Q34365419	An empirical energy function for threading protein sequence through the folding motif
Q35233900	An evolutionary approach to folding small alpha-helical proteins that uses sequence information and an empirical guiding fitness function
Q30387510	An improved hybrid global optimization method for protein tertiary structure prediction
Q60045400	An improved protein structure evaluation using a semi-empirically derived structure property
Q37262313	An iterative method for extracting energy-like quantities from protein structures.
Q30378786	Analyses on hydrophobicity and attractiveness of all-atom distance-dependent potentials.
Q50054811	Analysis of Conserved, Computationally Predicted Epitope Regions for VP5 and VP7 Across three Orbiviruses.
Q30163852	Analysis of side-chain rotamers in transmembrane proteins
Q41851366	Analysis of temperature factor distribution in high-resolution protein structures
Q31081683	Analysis of the "thermodynamic information content" of a Homo sapiens structural database reveals hierarchical thermodynamic organization
Q34088605	Analysis of the three-alpha-helix motif in the spectrin superfamily of proteins
Q27682490	Analysis of worldwide sequence mutations in Zika virus proteins E, NS1, NS3 and NS5 from a structural point of view
Q33543379	Antimicrobial peptide-like genes in Nasonia vitripennis: a genomic perspective
Q30908273	Application of data mining tools for classification of protein structural class from residue based averaged NMR chemical shifts
Q30176033	Architecture of beta-barrel membrane proteins: analysis of trimeric porins
Q41880913	Architecture of helix bundle membrane proteins: an analysis of cytochrome c oxidase from bovine mitochondria
Q42940102	Architecture of the Saccharomyces cerevisiae RNA polymerase I Core Factor complex.
Q30193898	Are most transporters and channels beta barrels?
Q36672683	Assessment of 3D models for allergen research
Q43983343	Assessment of optimized Markov models in protein fold classification
Q28283805	Assessment of protein models with three-dimensional profiles
Q37109015	Assessment of the structural and functional impact of in-frame mutations of the DMD gene, using the tools included in the eDystrophin online database
Q36628330	Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium
Q21284528	AtTRB1–3 Mediates Structural Changes in AtPOT1b to Hold ssDNA
Q21142643	Atomic interaction networks in the core of protein domains and their native folds
Q50034908	Atomic structures of low-complexity protein segments reveal kinked β sheets that assemble networks.
Q33782635	Atypical alpha-conotoxin LtIA from Conus litteratus targets a novel microsite of the alpha3beta2 nicotinic receptor
Q51812292	Automated NMR structure determination of stereo-array isotope labeled ubiquitin from minimal sets of spectra using the SAIL-FLYA system.
Q30329583	Automated assignment of SCOP and CATH protein structure classifications from FSSP scores.
Q30581794	Automated diagnosis of data-model conflicts using metadata
Q30341442	Automated structure prediction of weakly homologous proteins on a genomic scale
Q36144345	B-Pred, a structure based B-cell epitopes prediction server
Q45368523	BK virus-associated infection in cerebrospinal fluid of neurological patients and mutation analysis of the complete VP1 gene in different patient groups
Q40744027	Bayesian probabilistic approach for predicting backbone structures in terms of protein blocks
Q30369481	Benchmarking of TASSER_2.0: an improved protein structure prediction algorithm with more accurate predicted contact restraints
Q33568312	Binding and cleavage of E. coli HUbeta by the E. coli Lon protease
Q59805039	Biochemical Characterization of AroH, a Putative Aromatic Amino Acid Aminotransferase
Q39886819	Biochemical and In-silico Studies on Pectin Methylesterase from G9 Variety of Musa acuminata for Delayed Ripening
Q90720759	Bioinformatics for Marine Products: An Overview of Resources, Bottlenecks, and Perspectives
Q34858053	Bioinformatics for the genomic sciences and towards systems biology. Japanese activities in the post-genome era.
Q40696891	Biophysical Studies on HCV 1a NS3/4A Protease and Its Catalytic Triad in Wild Type and Mutants by the In Silico Approach
Q57052679	Biotite: a unifying open source computational biology framework in Python
Q40775428	Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures
Q35488987	Broad-spectrum inhibitors against 3C-like proteases of feline coronaviruses and feline caliciviruses.
Q27734067	Buried polar residues and structural specificity in the GCN4 leucine zipper
Q30365149	CCBuilder: an interactive web-based tool for building, designing and assessing coiled-coil protein assemblies.
Q30409027	CONTSOR--a new knowledge-based fold recognition potential, based on side chain orientation and contacts between residue terminal groups
Q30392751	Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models
Q40997875	Calculation of substrate binding affinities for a bacterial GH78 rhamnosidase through molecular dynamics simulations
Q52082394	Can a pairwise contact potential stabilize native protein folds against decoys obtained by threading?
Q30332785	Can correct protein models be identified?
Q89767558	Cancer-derived UTX TPR mutations G137V and D336G impair interaction with MLL3/4 complexes and affect UTX subcellular localization
Q31115802	Capturing protein sequence-structure specificity using computational sequence design
Q40084996	Catalytic mechanism of short ethoxy chain nonylphenol dehydrogenase belonging to a polyethylene glycol dehydrogenase group in the GMC oxidoreductase family
Q40819573	Catching a common fold
Q41722286	Cervical cancer in Indian women reveals contrasting association among common sub-family of HLA class I alleles
Q90302308	Chalcones as a basis for computer-aided drug design: innovative approaches to tackle malaria
Q37424495	Challenges in the computational design of proteins
Q93012630	Characterization and diversity of the complete set of GH family 3 enzymes from Rhodothermus marinus DSM 4253
Q35930800	Characterization of CCTα and evaluating its expression in the mud crab Scylla paramamosain when challenged by low temperatures alone and in combination with high and low salinity
Q90150601	Characterization of Novel Fragment Antibodies Against TNF-alpha Isolated Using Phage Display Technique
Q42847452	Characterization of a comparative model of the extracellular domain of the epidermal growth factor receptor
Q39929605	Characterization of cytR mutations that influence oligomerization of mutant repressor subunits
Q28478331	Characterization of novel StAR (steroidogenic acute regulatory protein) mutations causing non-classic lipoid adrenal hyperplasia
Q36363428	Characterization of the Binding Site of Aspartame in the Human Sweet Taste Receptor
Q27684571	Characterization of the SAM domain of the PKD-related protein ANKS6 and its interaction with ANKS3
Q30417434	Characterizing the microenvironment surrounding protein sites
Q61995529	Cholesterol bound Plasmodium falciparum co-chaperone 'PFA0660w' complexes with major virulence factor 'PfEMP1' via chaperone 'PfHsp70-x'
Q30431594	Class-directed structure determination: foundation for a protein structure initiative
Q73563493	Classification of the environment of protein residues
Q38701568	Clinical or ATPase domain mutations in ABCD4 disrupt the interaction between the vitamin B12-trafficking proteins ABCD4 and LMBD1.
Q34787167	Cloning and functional characterization of endo-β-1,4-glucanase gene from metagenomic library of vermicompost.
Q47834800	Cloning, expression and decoding of the cold adaptation of a new widely represented thermolabile subtilisin-like protease.
Q27731950	Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5
Q39527778	Cold-adapted alanine dehydrogenases from two antarctic bacterial strains: gene cloning, protein characterization, and comparison with mesophilic and thermophilic counterparts
Q28821515	Comparative Functional Genomic Analysis of Two Vibrio Phages Reveals Complex Metabolic Interactions with the Host Cell
Q30366550	Comparative Protein Structure Modeling Using MODELLER
Q41144462	Comparative Protein Structure Modeling Using MODELLER.
Q46629154	Comparative Protein Structure Modeling Using MODELLER.
Q52560158	Comparative analyses and structural insights of the novel cytochrome P450 fusion protein family CYP5619 in Oomycetes.
Q43031536	Comparative analysis of thermoadaptation within the archaeal glyceraldehyde-3-phosphate dehydrogenases from mesophilic Methanobacterium bryantii and thermophilic Methanothermus fervidus
Q56579766	Comparative genome analysis of Alkhumra hemorrhagic fever virus with Kyasanur forest disease and tick-borne encephalitis viruses by the in silico approach
Q32039139	Comparative methods for identifying functional domains in protein sequences.
Q87403335	Comparative modeling and molecular dynamics suggest high carboxylase activity of the Cyanobium sp. CACIAM14 RbcL protein
Q57266058	Comparative modeling of 25-hydroxycholesterol-7α-hydroxylase (CYP7B1): ligand binding and analysis of hereditary spastic paraplegia type 5 CYP7B1 mutations
Q42197708	Comparative modeling of retinol-binding protein-3 and retinal S-antigen in Eales' disease and prediction of their binding sites using computational methods
Q73798371	Comparative modeling studies of the calmodulin-like domain of calcium-dependent protein kinase from soybean
Q29615142	Comparative protein structure modeling using Modeller
Q45800889	Comparative study of Plasmodium falciparum erythrocyte membrane protein 1-DBLα domain variants with respect to antigenic variations and docking interaction analysis with glycosaminoglycans
Q36277752	Comparison of conformational characteristics in structurally similar protein pairs
Q30426718	Comparison of protein structures using 3D profile alignment
Q80281973	Complete activation of Bax by a single site mutation
Q89983617	Complex approach for analysis of snake venom α-neurotoxins binding to HAP, the high-affinity peptide
Q57933119	Computational Analysis and Binding Site Identification of Type III Secretion System ATPase from Pseudomonas aeruginosa
Q42558746	Computational Analysis of N-acetyl transferase in Tribolium castaneum
Q57492142	Computational Insight Into Vitamin K ω-Hydroxylation by Cytochrome P450 4F2
Q40845207	Computational Studies of Benzoxazinone Derivatives as Antiviral Agents against Herpes Virus Type 1 Protease.
Q38333539	Computational analyses of the catalytic and heparin-binding sites and their interactions with glycosaminoglycans in glycoside hydrolase family 79 endo-β-D-glucuronidase (heparanase).
Q33907569	Computational and experimental approaches to reveal the effects of single nucleotide polymorphisms with respect to disease diagnostics
Q40766113	Computational challenges for macromolecular structure determination by X-ray crystallography and solution NMR-spectroscopy
Q52315206	Computational characterisation of potential RNA-binding sites in arenavirus nucleocapsid proteins.
Q36168495	Computational characterization of proteins
Q38092809	Computational enzyme design
Q41741173	Computational genetics: finding protein function by nonhomology methods.
Q41159732	Computational interaction analysis of organophosphorus pesticides with different metabolic proteins in humans.
Q41681264	Computational methods for the prediction of protein folds
Q30398071	Computational methods in drug discovery.
Q40454877	Computational model of hepatitis B virus DNA polymerase: molecular dynamics and docking to understand resistant mutations.
Q64908061	Computational prediction of vaccine potential epitopes and 3-dimensional structure of XAGE-1b for non-small cell lung cancer immunotherapy.
Q28479418	Computational reverse-engineering of a spider-venom derived peptide active against Plasmodium falciparum SUB1
Q59614315	Computational simulations of stem-cell factor/c-Kit receptor interaction
Q34013751	Computational study of the human dystrophin repeats: interaction properties and molecular dynamics.
Q36803122	Computational study of the putative active form of protein Z (PZa): sequence design and structural modeling
Q38895288	Computer modelling reveals new conformers of the ATP binding loop of Na+/K+-ATPase involved in the transphosphorylation process of the sodium pump
Q36359991	Concepts in protein folding
Q30417807	Conformation, energy, and folding ability of selected amino acid sequences
Q27675253	Conopeptide -TIA Defines a New Allosteric Site on the Extracellular Surface of the 1B-Adrenoceptor
Q59073215	Conserved residues and the mechanism of protein folding
Q30424569	Constructing amino acid residue substitution classes maximally indicative of local protein structure
Q42609883	Construction of 3D models of the CYP11B family as a tool to predict ligand binding characteristics
Q35082922	Construction of helix-bundle membrane proteins
Q34326495	Contact-based sequence alignment
Q74495406	Cooperativity in protein folding: from lattice models with sidechains to real proteins
Q47858941	Cooperativity principles in protein folding.
Q41671602	Cornering and catching the common protein fold
Q51913899	Correlations between designability and various structural characteristics of protein lattice models.
Q36277916	Crevice-forming mutants of bovine pancreatic trypsin inhibitor: stability changes and new hydrophobic surface
Q98471232	CryoEM structure of the low-complexity domain of hnRNPA2 and its conversion to pathogenic amyloid
Q47241770	Crystal Structure of Bicc1 SAM Polymer and Mapping of Interactions between the Ciliopathy-Associated Proteins Bicc1, ANKS3, and ANKS6.
Q27637727	Crystal structure of MJ1247 protein from M. jannaschii at 2.0 A resolution infers a molecular function of 3-hexulose-6-phosphate isomerase
Q27637739	Crystal structure of PMM/PGM: an enzyme in the biosynthetic pathway of P. aeruginosa virulence factors
Q34985056	Crystal structure of rhodopsin: a template for cone visual pigments and other G protein-coupled receptors.
Q27642117	Crystal structure of the phosphotyrosine recognition domain SH2 of v-src complexed with tyrosine-phosphorylated peptides
Q24596336	Crystal structure of vitelline membrane outer layer protein I (VMO-I): a folding motif with homologous Greek key structures related by an internal three-fold symmetry
Q27734064	Crystal structures of a single coiled-coil peptide in two oligomeric states reveal the basis for structural polymorphism
Q47687283	Crystallographic structure and functional implications of the nitrogenase molybdenum-iron protein from azotobacter vinelandii
Q38866802	Ctr9, a Protein in the Transcription Complex Paf1, Regulates Dopamine Transporter Activity at the Plasma Membrane.
Q21132291	Cyclotide structure-activity relationships: qualitative and quantitative approaches linking cytotoxic and anthelmintic activity to the clustering of physicochemical forces
Q35035790	DIAN: a novel algorithm for genome ontological classification
Q36178798	DNA binding protein identification by combining pseudo amino acid composition and profile-based protein representation
Q48506341	DNA-PKcs structure suggests an allosteric mechanism modulating DNA double-strand break repair.
Q33865414	DNA-PKcs, Allostery, and DNA Double-Strand Break Repair: Defining the Structure and Setting the Stage.
Q30194891	De novo and inverse folding predictions of protein structure and dynamics
Q36278713	De novo protein design using pairwise potentials and a genetic algorithm
Q73146604	De novo protein design. II. Plasticity in sequence space
Q45882982	Dead-end based modeling tools to explore the sequence space that is compatible with a given scaffold
Q56353634	Deciphering the targets of retroviral protease inhibitors in Plasmodium berghei
Q24562986	Definition of a metal-dependent/Li(+)-inhibited phosphomonoesterase protein family based upon a conserved three-dimensional core structure
Q30370558	Denatured-state energy landscapes of a protein structural database reveal the energetic determinants of a framework model for folding.
Q30418981	Derivation of rules for comparative protein modeling from a database of protein structure alignments
Q73678338	Derivatization, extraction and concentration of amino acids and peptides by using organic/aqueous phases in capillary electrophoresis with fluorescence detection
Q41810917	Descriptor-based protein remote homology identification
Q51659643	Design and Stereochemical Research (DFT, ECD and Crystal Structure) of Novel Bedaquiline Analogs as Potent Antituberculosis Agents.
Q44125145	Design and folding of dimeric proteins
Q38270160	Design of an optimal Chebyshev-expanded discrimination function for globular proteins
Q58882349	Designability of lattice model heteropolymers
Q35127333	Designing amino acids to determine the local conformations of peptides
Q33632621	Designing potential energy functions for protein folding
Q36688816	Detailed assessment of spatial hydrophobic and electrostatic properties of 2D NMR-derived models of neurotoxin II.
Q41010576	Detecting distant homology with Meta-BASIC.
Q44754837	Detecting selection for negative design in proteins through an improved model of the misfolded state
Q38223691	Detecting selection on protein stability through statistical mechanical models of folding and evolution
Q48070706	Detection of alpha/beta-hydrolase fold in the cell surface esterases of Acinetobacter species using an analysis of 3D profiles
Q36743900	Detection of protein fold similarity based on correlation of amino acid properties
Q27641586	Determinants of the Src Homology Domain 3-Like Fold
Q42030014	Determination and validation of mTOR kinase-domain 3D structure by homology modeling
Q37033233	Determination by systematic deletion of the amino acids essential for catalysis by ricin A chain
Q42843710	Different protein sequences can give rise to highly similar folds through different stabilizing interactions.
Q92864658	Discovery of Potential Anti-infective Therapy Targeting Glutamine Synthetase in Staphylococcus xylosus
Q54978531	Discovery of small molecules through pharmacophore modeling, docking and molecular dynamics simulation against Plasmodium vivax Vivapain-3 (VP-3).
Q34721375	Discriminating compact nonnative structures from the native structure of globular proteins
Q33520982	Discriminating the native structure from decoys using scoring functions based on the residue packing in globular proteins
Q30401700	Discrimination of Native-like States of Membrane Proteins with Implicit Membrane-based Scoring Functions.
Q28144055	Discrimination of the native from misfolded protein models with an energy function including implicit solvation
Q34508656	Diverse spectrum of rare deafness genes underlies early-childhood hearing loss in Japanese patients: a cross-sectional, multi-center next-generation sequencing study
Q36630361	Diversified sequences of peptide epitope for same-RNA recognition.
Q35393314	Do cryptic species exist in Hoplobatrachus rugulosus? An examination using four nuclear genes, the cyt b gene and the complete MT genome
Q27313291	Docking studies of Pakistani HCV NS3 helicase: a possible antiviral drug target
Q57275259	Domain One of the High Affinity IgE Receptor, FcεRI, Regulates Binding to IgE through Its Interface with Domain Two
Q35926542	Drug repurposing to target Ebola virus replication and virulence using structural systems pharmacology
Q36451791	Early evolution of photosynthesis: clues from nitrogenase and chlorophyll iron proteins
Q57555287	EasyPDP: An Efficient Parallel Dynamic Programming Runtime System for Computational Biology
Q39104074	Effects of ellipticine on ALDH1A1-expressing breast cancer stem cells--an in vitro and in silico study
Q34740567	Effects of metal on the biochemical properties of Helicobacter pylori HypB, a maturation factor of [NiFe]-hydrogenase and urease
Q59132384	Efficacy of sertraline against : an in vitro and in silico study
Q45364968	Emergence of pyridoxal phosphorylation through a promiscuous ancestor during the evolution of hydroxymethyl pyrimidine kinases
Q38069390	Emerging themes in the computational design of novel enzymes and protein-protein interfaces
Q30350184	Empirical limits for template-based protein structure prediction: the CASP5 example.
Q37112790	Endocytosis of Mycobacterium tuberculosis heat shock protein 60 is required to induce interleukin-10 production in macrophages
Q37448000	Endoplasmic Reticulum Stress Enhances Mitochondrial Metabolic Activity in Mammalian Adrenals and Gonads
Q50909527	Engineering of isoamylase: improvement of protein stability and catalytic efficiency through semi-rational design.
Q89477243	Enhancement of Aeribacillus pallidus strain VP3 lipase catalytic activity through optimization of medium composition using Box-Behnken design and its application in detergent formulations
Q24561780	Environment affects amino acid preference for secondary structure
Q52387605	Environmental characteristics of residues in proteins: three-dimensional molecular hydrophobicity potential approach.
Q50702744	Enzymatic properties of newly found green turtle egg white ribonuclease.
Q36409048	Estimation of Inhibitory Effect against Tyrosinase Activity through Homology Modeling and Molecular Docking
Q24792678	EvDTree: structure-dependent substitution profiles based on decision tree classification of 3D environments
Q36838705	Evaluating and optimizing computational protein design force fields using fixed composition-based negative design
Q24633019	Evaluating the efficacy of tryptophan fluorescence and absorbance as a selection tool for identifying protein crystals
Q33855340	Evaluation and improvement of multiple sequence methods for protein secondary structure prediction.
Q43119498	Evaluation of enoyl-acyl carrier protein reductase inhibitors as Pseudomonas aeruginosa quorum-quenching reagents.
Q28538496	Evaluation of influence of single nucleotide polymorphisms in cytochrome P450 2B6 on substrate recognition using computational docking and molecular dynamics simulation
Q45823238	Evaluation performance of substitution matrices, based on contacts between residue terminal groups
Q34375245	Evidence for assembly of prions with left-handed beta-helices into trimers
Q30838258	Evidence supporting the existence of a NUPR1-like family of helix-loop-helix chromatin proteins related to, yet distinct from, AT hook-containing HMG proteins
Q30370011	Evolution, energy landscapes and the paradoxes of protein folding.
Q34602519	Evolution-like selection of fast-folding model proteins
Q45007494	Evolutionarily evolved discriminators in the 3-TPR domain of the Toc64 family involved in protein translocation at the outer membrane of chloroplasts and mitochondria
Q40931321	Evolutionary algorithms in computer-aided molecular design
Q42732326	Evolutionary classification of homeodomains
Q35614467	Expanding Duplication of Free Fatty Acid Receptor-2 (GPR43) Genes in the Chicken Genome
Q27619558	Experimental verification of the 'stability profile of mutant protein' (SPMP) data using mutant human lysozymes
Q40947077	Exploration of new drug-like inhibitors for serine/threonine protein phosphatase 5 of Plasmodium falciparum: a docking and simulation study.
Q48063016	Exploration of the binding affinities between ecdysone agonists and EcR/USP by docking and MM-PB/GBSA approaches.
Q30394826	Exploring Human Diseases and Biological Mechanisms by Protein Structure Prediction and Modeling.
Q43071893	Exploring in silico affinity of flavonoids and tannins to human fibroblast growth factorinducible14 (Fn14), a member of TNF receptor super family
Q37134509	Exploring the Molecular Basis for Binding of Inhibitors by Threonyl-tRNA Synthetase from Brucella abortus: A Virtual Screening Study
Q27345253	Exploring the Origin of Differential Binding Affinities of Human Tubulin Isotypes αβII, αβIII and αβIV for DAMA-Colchicine Using Homology Modelling, Molecular Docking and Molecular Dynamics Simulations
Q46203879	Exploring the allowed sequence space of a membrane protein
Q41730061	Exploring the interactions between isoprenoid chain and labdenediol diphosphate synthase based on molecular docking and quartz crystal microbalance
Q43169526	Exploring the molecular basis for selective binding of Mycobacterium tuberculosis Asp kinase toward its natural substrates and feedback inhibitors: a docking and molecular dynamics study.
Q37645108	Exploring the molecular basis for selective binding of homoserine dehydrogenase from Mycobacterium leprae TN toward inhibitors: a virtual screening study
Q34178599	Exploring the propensities of helices in PrP(C) to form beta sheet using NMR structures and sequence alignments
Q39378730	Expression of ZAT12 transcripts in transgenic tomato under various abiotic stresses and modeling of ZAT12 protein in silico
Q58799374	Expression of novel fusion antiviral proteins ricin a chain-pokeweed antiviral proteins (RTA-PAPs) in Escherichia coli and their inhibition of protein synthesis and of hepatitis B virus in vitro
Q33551432	Expression, purification and structural analysis of the Pyrococcus abyssi RNA binding protein PAB1135.
Q34277783	Extraordinary divergence and positive Darwinian selection in a fusagenic protein coating the acrosomal process of abalone spermatozoa
Q73221953	Factors affecting the ability of energy functions to discriminate correct from incorrect folds
Q36281514	Factors limiting the performance of prediction-based fold recognition methods
Q74631425	Factors that affect the folding ability of proteins
Q41822641	Families and the structural relatedness among globular proteins
Q33501368	Fast optimization of statistical potentials for structurally constrained phylogenetic models
Q30322715	Feasibility in the inverse protein folding protocol.
Q37419187	Finding of residues crucial for supersecondary structure formation
Q47567885	Finding the needle in the haystack: towards solving the protein-folding problem computationally.
Q72033322	Finding the right fold
Q54116621	Fisetin Confers Cardioprotection against Myocardial Ischemia Reperfusion Injury by Suppressing Mitochondrial Oxidative Stress and Mitochondrial Dysfunction and Inhibiting Glycogen Synthase Kinase 3β Activity.
Q64966791	Fitness of unregulated human Ras mutants modeled by implementing computational mutagenesis and machine learning techniques.
Q91882654	Fluoxetine Inhibits Enterovirus Replication by Targeting the Viral 2C Protein in a Stereospecific Manner
Q28280035	Fold and function predictions for Mycoplasma genitalium proteins
Q41991659	Fold prediction by a hierarchy of sequence, threading, and modeling methods
Q30969610	Fold recognition and accurate query-template alignment by a combination of PSI-BLAST and threading
Q31153908	Fold recognition by combining profile-profile alignment and support vector machine
Q31124129	Fold recognition by combining sequence profiles derived from evolution and from depth-dependent structural alignment of fragments
Q33240177	Fold-recognition and comparative modeling of human alpha2,3-sialyltransferases reveal their sequence and structural similarities to CstII from Campylobacter jejuni
Q81384043	Folding behaviors of lattice model proteins with three kinds of contact potentials
Q36542875	Folding protein models with a simple hydrophobic energy function: the fundamental importance of monomer inside/outside segregation
Q24679141	Forerunner genes contiguous to RB1 contribute to the development of in situ neoplasia
Q46909156	Fragmental modeling of human glutamate transporter EAAT1 and analysis of its binding modes by docking and pharmacophore mapping
Q50422794	Frequency and specific characteristics of the incomplete partition type III anomaly in children.
Q41666691	From fold predictions to function predictions: automation of functional site conservation analysis for functional genome predictions
Q30326815	From fold recognition to homology modeling: an analysis of protein modeling challenges at different levels of prediction complexity.
Q30326004	From genes to protein structure and function: novel applications of computational approaches in the genomic era.
Q33892544	From isotropic to anisotropic side chain representations: comparison of three models for residue contact estimation
Q27664145	Fully automated high-quality NMR structure determination of small 2H-enriched proteins
Q33978104	Functional and structural diversity in the Als protein family of Candida albicans
Q35792915	Functional conservation of an ancestral Pellino protein in helminth species
Q44924265	Functional domains of Brevibacillus thermoruber lon protease for oligomerization and DNA binding: role of N-terminal and sensor and substrate discrimination domains.
Q30416471	Functional genomics based prioritization of potential nsSNPs in EPHX1, GSTT1, GSTM1 and GSTP1 genes for breast cancer susceptibility studies
Q52998299	Functional impacts of non-synonymous single nucleotide polymorphisms: selective constraint and structural environments.
Q30321832	Functional insights from structural predictions: analysis of the Escherichia coli genome.
Q30336447	Functional prediction of a T-DNA tagged gene of Arabidopsis thaliana by in silico analysis.
Q34283122	Functional versatility in the CRP-FNR superfamily of transcription factors: FNR and FLP.
Q34107019	Fusion of self-assembling amphipathic oligopeptides with cyclodextrin glycosyltransferase improves 2-O-D-glucopyranosyl-L-ascorbic acid synthesis with soluble starch as the glycosyl donor
Q61805435	GRID-independent molecular descriptor analysis and molecular docking studies to mimic the binding hypothesis of γ-aminobutyric acid transporter 1 (GAT1) inhibitors
Q30417143	GSAFold: a new application of GSA to protein structure prediction
Q27931997	Gcn1 and actin binding to Yih1: implications for activation of the eIF2 kinase GCN2.
Q29620735	GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences
Q30424580	Genetic algorithms for protein structure prediction
Q42847014	Genome analysis: Assigning protein coding regions to three-dimensional structures
Q30363515	Genome bioinformatic analysis of nonsynonymous SNPs
Q30322856	Genome-based structural biology.
Q90283225	Genomic Analyses Identify Novel Molecular Signatures Specific for the Caenorhabditis and other Nematode Taxa Providing Novel Means for Genetic and Biochemical Studies
Q52310657	Global optimum protein threading with gapped alignment and empirical pair score functions.
Q30330015	Global perspectives on proteins: comparing genomes in terms of folds, pathways and beyond.
Q43874869	Gly-103 in the N-terminal domain of Saccharomyces cerevisiae Rad51 protein is critical for DNA binding
Q38948743	HMMs in Protein Fold Classification
Q30413388	HORIBALFRE program: Higher Order Residue Interactions Based ALgorithm for Fold REcognition
Q36281388	Helix-bundle membrane protein fold templates
Q89622630	Hepatitis E Virus Cysteine Protease Has Papain Like Properties Validated by in silico Modeling and Cell-Free Inhibition Assays
Q29622874	Hidden Markov models
Q29614397	Hidden Markov models in computational biology. Applications to protein modeling
Q58882351	Hierarchy of events in the folding of model proteins
Q43058002	High-quality homology models derived from NMR and X-ray structures of E. coli proteins YgdK and Suf E suggest that all members of the YgdK/Suf E protein family are enhancers of cysteine desulfurases
Q35914435	Highly conserved configuration of catalytic amino acid residues among calicivirus-encoded proteases.
Q30418257	Homology Modeling of Coagulase in Staphylococcus aureus
Q42844691	Homology model of human interferon-alpha 8 and its receptor complex
Q28270093	Homology model of human retinoic acid metabolising enzyme cytochrome P450 26A1 (CYP26A1): active site architecture and ligand binding
Q47972593	Homology model of the human tRNA splicing ligase RtcB.
Q38271516	Homology modeling and consensus protein disorder prediction of human filamin.
Q44080465	Homology modeling and docking mechanism of the mercaptosuccinate and methotrexate to P. falciparum 1-Cys peroxiredoxin: a preliminary molecular study
Q39831076	Homology modeling and docking studies of human Bcl-2L10 protein
Q55102636	Homology modeling and epitope prediction of Der f 33.
Q30365203	Homology modeling and molecular docking of human pituitary adenylate cyclase‑activating polypeptide I receptor.
Q50868092	Homology modeling and structural comparison of leucine rich repeats of Toll like receptors 1-10 of ruminants.
Q41240727	Homology modeling and virtual screening approaches to identify potent inhibitors of VEB-1 β-lactamase
Q34169791	Homology modeling of cephalopod lens S-crystallin: a natural mutant of sigma-class glutathione transferase with diminished endogenous activity
Q34769682	Homology modeling of human γ-butyric acid transporters and the binding of pro-drugs 5-aminolevulinic acid and methyl aminolevulinic acid used in photodynamic therapy
Q39998069	Homology modeling of phosphoryl thymidine kinase of enterohemorrhagic Escherichia coli OH: 157.
Q54372358	Homology modeling of the human 5-HT1A, 5-HT 2A, D1, and D2 receptors: model refinement with molecular dynamics simulations and docking evaluation.
Q84417497	Homology modeling of the structure of acyl coA:isopenicillin N-acyltransferase (IAT) from Penicillium chrysogenum. IAT interaction studies with isopenicillin-N, combining molecular dynamics simulations and docking
Q87354694	Homology modeling, molecular dynamics and atomic level interaction study of snake venom 5' nucleotidase
Q73501704	Homology modelling of an antimicrobial protein, Ace-AMP1, from lipid transfer protein structures
Q64090444	Host adaptation and convergent evolution increases antibiotic resistance without loss of virulence in a major human pathogen
Q34087555	Hotspot-centric de novo design of protein binders
Q30430276	How evolution makes proteins fold quickly
Q33583580	How the first biopolymers could have evolved
Q30327152	How to generate improved potentials for protein tertiary structure prediction: a lattice model study.
Q31922968	How to guarantee optimal stability for most representative structures in the Protein Data Bank.
Q22010501	Human chemokine receptors CCR5, CCR3 and CCR2B share common polarity motif in the first extracellular loop with other human G-protein coupled receptors implications for HIV-1 coreceptor function
Q24605680	I-TASSER: a unified platform for automated protein structure and function prediction
Q48184278	Identification and analysis of OsttaDSP, a phosphoglucan phosphatase from Ostreococcus tauri.
Q88815475	Identification and application of self-binding zipper-like sequences in SARS-CoV spike protein
Q98280893	Identification and characterization of cytosolic malate dehydrogenase from the liver fluke Fasciola gigantica
Q38649778	Identification and functionality prediction of pathogenesis-related protein 1 from legume family
Q39839330	Identification and nucleotide sequences of mxaA, mxaC, mxaK, mxaL, and mxaD genes from Methylobacterium extorquens AM1
Q33647388	Identification and structural characterization of FYVE domain-containing proteins of Arabidopsis thaliana
Q92006551	Identification and validation of specific B-cell epitopes of hantaviruses associated to hemorrhagic fever and renal syndrome
Q99240240	Identification of 6-(piperazin-1-yl)-1,3,5-triazine as a chemical scaffold with broad anti-schistosomal activities
Q52855297	Identification of Ideal Multi-targeting Bioactive Compounds Against Mur Ligases of Enterobacter aerogenes and Its Binding Mechanism in Comparison with Chemical Inhibitors.
Q30045790	Identification of Plasmodium falciparum apicoplast-targeted tRNA-guanine transglycosylase and its potential inhibitors using comparative genomics, molecular modelling, docking and simulation studies
Q64097123	Identification of a novel potassium channel (GiK) as a potential drug target in : Computational descriptions of binding sites
Q28252347	Identification of an interleukin-15alpha receptor-binding site on human interleukin-15
Q44324006	Identification of hotspot regions of MurB oxidoreductase enzyme using homology modeling, molecular dynamics and molecular docking techniques
Q28479342	Identification of inhibitors against Mycobacterium tuberculosis thiamin phosphate synthase, an important target for the development of anti-TB drugs
Q40495564	Identification of internalin-A-like virulent proteins in Leishmania donovani
Q47401604	Identification of key residues modulating the stereoselectivity of nitrile hydratase toward rac-mandelonitrile by semi-rational engineering
Q28829195	Identification of novel natural compound inhibitors for human complement component 5a receptor by homology modeling and virtual screening
Q47656081	Identification of novel natural inhibitors of Opisthorchis felineus cytochrome P450 using structure-based screening and molecular dynamic simulation.
Q38771000	Identification of potential inhibitors for HCV NS3 genotype 4a by combining protein-ligand interaction fingerprint, 3D pharmacophore, docking, and dynamic simulation
Q50937040	Identification of potential inhibitors of Fasciola gigantica thioredoxin1: computational screening, molecular dynamics simulation, and binding free energy studies.
Q30159151	Identification of sequence pattern with profile analysis
Q71821463	Identification of the amino acid subsets accounting for the ligand binding specificity of a glutamate receptor
Q37401433	Identifying catalytic residues in CPAF, a Chlamydia-secreted protease
Q46165830	Identifying native-like protein structures using physics-based potentials
Q47914664	Immunological, structural, and preliminary X-ray diffraction characterizations of the fusion core of the SARS-coronavirus spike protein
Q33587964	Impact of Genetic Variations in HIV-1 Tat on LTR-Mediated Transcription via TAR RNA Interaction
Q90019860	Importance of amino acids Leu135 and Tyr236 for the interaction between EhCFIm25 and RNA: a molecular dynamics simulation study
Q73174215	Improved design of stable and fast-folding model proteins
Q30329384	Improved recognition of native-like protein structures using a family of designed sequences
Q30574129	Improved secondary structure predictions for a nicotinic receptor subunit: incorporation of solvent accessibility and experimental data into a two-dimensional representation
Q30377670	Improving protein fold recognition with hybrid profiles combining sequence and structure evolution.
Q30405821	Improving protein structure prediction using multiple sequence-based contact predictions
Q30412004	Improving protein template recognition by using small-angle x-ray scattering profiles
Q38961231	In Silico Approach for SAR Analysis of the Predicted Model of DEPDC1B: A Novel Target for Oral Cancer
Q92191163	In Silico Characterization of Structural Distinctions between Isoforms of Human and Mouse Sphingosine Kinases for Accelerating Drug Discovery
Q36530921	In Silico Phylogenetic Analysis and Molecular Modelling Study of 2-Haloalkanoic Acid Dehalogenase Enzymes from Bacterial and Fungal Origin
Q33661465	In Silico Prediction of T and B Cell Epitopes of Der f 25 in Dermatophagoides farinae
Q90636580	In Silico Site-Directed Mutagenesis Informs Species-Specific Predictions of Chemical Susceptibility Derived From the Sequence Alignment to Predict Across Species Susceptibility (SeqAPASS) Tool
Q89998558	In Silico evaluation and identification of fungi capable of producing endo-inulinase enzyme
Q89505631	In Silico identification of angiotensin-converting enzyme inhibitory peptides from MRJP1
Q44714171	In silico 3D structure prediction and hydrogen peroxide binding study of wheat catalase
Q38604868	In silico Analyses of Subtype Specific HIV-1 Tat-TAR RNA Interaction Reveals the Structural Determinants for Viral Activity
Q90180939	In silico Investigations of the Mode of Action of Novel Colchicine Derivatives Targeting β-Tubulin Isotypes: A Search for a Selective and Specific β-III Tubulin Ligand
Q41927274	In silico analysis of Myoglobin in Channa striata
Q41696331	In silico analysis of binding interaction of conantokins with NMDA receptors for potential therapeutic use in Alzheimer's disease.
Q34879322	In silico analysis of single nucleotide polymorphism (SNP) in human TNF-α gene
Q58556990	In silico assessment of new progesterone receptor inhibitors using molecular dynamics: a new insight into breast cancer treatment
Q27974727	In silico characterization of an atypical MAPK phosphatase of Plasmodium falciparum as a suitable target for drug discovery
Q90061122	In silico epitope prediction and immunogenic analysis for penton base epitope-focused vaccine against hydropericardium syndrome in chicken
Q92643626	In silico evidence of de novo interactions between ribosomal and Epstein - Barr virus proteins
Q30466603	In silico modeling of the pore region of a KCNQ4 missense mutant from a patient with hearing loss
Q35245151	In silico molecular docking, preclinical evaluation of spiroindimicins A-D, lynamicin A and D isolated from deep marine sea derived Streptomyces sp. SCSIO 03032.
Q42622401	In silico predictions of 3D structures of linear and cyclic peptides with natural and non-proteinogenic residues
Q30414362	In silico profiling of deleterious amino acid substitutions of potential pathological importance in haemophlia A and haemophlia B.
Q51546451	In silico studies of the interaction between BRN2 protein and MORE DNA.
Q30843053	In silico-based vaccine design against Ebola virus glycoprotein
Q54333659	In vitro Ca(2+)-dependent maturation of milk-clotting recombinant Epr: minor extracellular protease: from Bacillus licheniformis.
Q33838009	In vivo protein tyrosine nitration in Arabidopsis thaliana
Q57471890	In-Silico Prediction and Modeling of the Quorum Sensing LuxS Protein and Inhibition of AI-2 Biosynthesis in
Q39135800	In-silico characterization of Formin Binding Protein 4 Family of proteins.
Q36254409	In-silico comparative study of inhibitory mechanism of Plant Serine Proteinase Inhibitors
Q30331650	Information-theoretic dissection of pairwise contact potentials.
Q27348675	Inhibition of Mycobacterium-RmlA by Molecular Modeling, Dynamics Simulation, and Docking
Q30352031	Insight from γC1 protein model for implication in cotton leaf curl disease.
Q36298697	Insight into SNPs and epitopes of E protein of newly emerged genotype-I isolates of JEV from Midnapur, West Bengal, India.
Q79158707	Insight into the inhibition of human choline kinase: homology modeling and molecular dynamics simulations
Q50964984	Insights into unbound-bound states of GPR142 receptor in a membrane-aqueous system using molecular dynamics simulations.
Q53580638	Insights on the structural perturbations in human MTHFR Ala222Val mutant by protein modeling and molecular dynamics.
Q38014471	Integrating fragmented software applications into holistic solutions: focus on drug discovery
Q39514612	Interaction between shrimp and white spot syndrome virus through PmRab7-VP28 complex: an insight using simulation and docking studies
Q30699853	Interaction of cardiotoxins with membranes: a molecular modeling study
Q74363284	Interaction potentials for protein folding
Q28242996	Interactions of the human mitochondrial protein import receptor, hTom20, with precursor proteins in vitro reveal pleiotropic specificities and different receptor domain requirements
Q41990524	Interactions of two odorant-binding proteins influence insect chemoreception
Q56903593	Introduction to protein folding for physicists
Q37600315	Inverse protein folding problem: designing polymer sequences
Q99413341	Is oseltamivir suitable for fighting against COVID-19: In silico assessment, in vitro and retrospective study
Q28385856	Isolated and Syndromic Retinal Dystrophy Caused by Biallelic Mutations in RCBTB1, a Gene Implicated in Ubiquitination
Q47138339	Isolation and Functional Characterization of an Acidic Myotoxic Phospholipase A₂ from Colombian Bothrops asper Venom.
Q42409473	Isolation and biochemical characterization of a new thrombin-like serine protease from Bothrops pirajai snake venom
Q91837437	Isolation and characterization of water-deficit stress-responsive α-expansin 1 (EXPA1) gene from Saccharum complex
Q45679871	Isolation, characterization, and structure analysis of a non-TIR-NBS-LRR encoding candidate gene from MYMIV-resistant Vigna mungo
Q37335533	Iterative saturation mutagenesis of -6 subsite residues in cyclodextrin glycosyltransferase from Paenibacillus macerans to improve maltodextrin specificity for 2-O-D-glucopyranosyl-L-ascorbic acid synthesis
Q52319063	Iterative template refinement: protein-fold prediction using iterative search and hybrid sequence/structure templates.
Q42250864	KREPA4, an RNA binding protein essential for editosome integrity and survival of Trypanosoma brucei
Q28315523	Knowledge-Based Protein Modeling
Q24676038	Knowledge-based model building of proteins: concepts and examples
Q30726969	Knowledge-based potential defined for a rotamer library to design protein sequences
Q41909894	LTHREADER: prediction of extracellular ligand-receptor interactions in cytokines using localized threading
Q54571599	Lac repressor-operator complex.
Q57218694	Lack of self-averaging in neutral evolution of proteins
Q28602797	Landmark-free geometric methods in biological shape analysis
Q30375635	Large-scale model quality assessment for improving protein tertiary structure prediction.
Q24654088	Large-scale protein structure modeling of the Saccharomyces cerevisiae genome
Q30367734	Learning To Fold Proteins Using Energy Landscape Theory.
Q52142055	Learning effective amino acid interactions through iterative stochastic techniques.
Q54281659	Leucine to proline substitution by SNP at position 197 in Caspase-9 gene expression leads to neuroblastoma: a bioinformatics analysis.
Q34334073	Ligand channeling within a G-protein-coupled receptor. The entry and exit of retinals in native opsin
Q47396241	Ligand-supported Homology Modelling of Protein Binding-sites using Knowledge-based Potentials
Q74615900	Linear programming optimization and a double statistical filter for protein threading protocols
Q36390858	Linking epigenetic function to electrostatics: The DNMT2 structural model example
Q34447424	Lipases and alpha/beta hydrolase fold
Q30439975	Loop 2 in Saccharomyces cerevisiae Rad51 protein regulates filament formation and ATPase activity
Q33245125	Lopap, a prothrombin activator from Lonomia obliqua belonging to the lipocalin family: recombinant production, biochemical characterization and structure-function insights
Q35812235	Low-resolution structure and fluorescence anisotropy analysis of protein tyrosine phosphatase eta catalytic domain
Q30382728	MUFOLD: A new solution for protein 3D structure prediction
Q31113169	MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading
Q24646301	MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information
Q40791340	Macromolecular chelation as an improved mechanism of protease inhibition: structure of the ecotin-trypsin complex.
Q44429790	Marine turtle mitogenome phylogenetics and evolution
Q30354609	Mass spectrometry coupled experiments and protein structure modeling methods.
Q30379161	Massive integration of diverse protein quality assessment methods to improve template based modeling in CASP11.
Q50967058	MaxMod: a hidden Markov model based novel interface to MODELLER for improved prediction of protein 3D models.
Q33268945	Maximum common subgraph: some upper bound and lower bound results
Q30424545	Membrane protein native state discrimination by implicit membrane models
Q42123433	Membrane protein stability analyses by means of protein energy profiles in case of nephrogenic diabetes insipidus
Q46737473	Minimum action principle and shape dynamics
Q37619003	Mining the Proteome of Fusobacterium nucleatum subsp. nucleatum ATCC 25586 for Potential Therapeutics Discovery: An In Silico Approach
Q42000716	Mitogen Activated Protein Kinase (MPK) Interacts With Auxin Influx Carrier (OsAux/LAX1) Involved in Auxin Signaling in Plant.
Q43743824	Modeling and analysis of the structure of the thermostable catechol 2,3-dioxygenase from Bacillus Stearothermophilus
Q39382681	Modeling and molecular dynamics of the intrinsically disordered e7 proteins from high- and low-risk types of human papillomavirus.
Q35990863	Modeling and structure function analysis of the putative anchor site of yeast telomerase
Q30371403	Modeling functional changes to Escherichia coli thymidylate synthase upon single residue replacements: a structure-based approach
Q24675092	Modeling of the spatial structure of eukaryotic ornithine decarboxylases
Q30328463	Modeling of the structural features of integral-membrane proteins reverse-environment prediction of integral membrane protein structure (REPIMPS)
Q42844816	Modeling protein loops using a phi i + 1, psi i dimer database
Q33789128	Modeling single nucleotide polymorphisms in the human AKR1C1 and AKR1C2 genes: implications for functional and genotyping analyses
Q51800504	Modeling the functional consequences of single residue replacements in bacteriophage f1 gene V protein.
Q30428829	Modeling the paramyxovirus hemagglutinin-neuraminidase protein
Q55423897	Modeling transcriptional activation changes to Gal4 variants via structure-based computational mutagenesis.
Q77748994	Modeling, synthesis and biological activity of novel antifungal agents (1)
Q28236254	Modeller: generation and refinement of homology-based protein structure models
Q40425218	Modelling mutations and homologous proteins
Q57991325	Modelling the metabolic action of human and rat CYP1A2 and its relationship with the carcinogenicity of heterocyclic amines
Q33322199	Modelling the structures of G protein-coupled receptors aided by three-dimensional validation.
Q40168426	Molecular Characterization of Legionellosis Drug Target Candidate Enzyme Phosphoglucosamine Mutase from Legionella pneumophila (strain Paris): An In Silico Approach
Q91927883	Molecular Docking and Molecular Dynamics Studies on Selective Synthesis of α-Amyrin and β-Amyrin by Oxidosqualene Cyclases from Ilex Asprella
Q37564526	Molecular Docking studies of D2 Dopamine receptor with Risperidone derivatives
Q98291777	Molecular Dynamics Simulations of Mite Aquaporin DerfAQP1 from the Dust Mite Dermatophagoides farinae (Acariformes: Pyroglyphidae)
Q36291814	Molecular Modeling and Docking Study to Elucidate Novel Chikungunya Virus nsP2 Protease Inhibitors
Q35781187	Molecular analysis of TCR and peptide/MHC interaction using P18-I10-derived peptides with a single D-amino acid substitution
Q50075838	Molecular architecture of the glucose 1-phosphate site in ADP-glucose pyrophosphorylases.
Q34009443	Molecular basis of NDM-1, a new antibiotic resistance determinant
Q40756718	Molecular characterization influencing metal resistance in the Cupriavidus/Ralstonia genomes
Q93036230	Molecular characterization of RNase III protein of Asaia sp. for developing a robust RNAi-based paratransgensis tool to affect the sexual life-cycle of Plasmodium or Anopheles fitness
Q36070983	Molecular characterization of a catalase from Hydra vulgaris
Q43017212	Molecular characterization of a thermostable aldehyde dehydrogenase (ALDH) from the hyperthermophilic archaeon Sulfolobus tokodaii strain 7.
Q48059890	Molecular characterization of an acidic phospholipase A(2) from Bothrops pirajai snake venom: synthetic C-terminal peptide identifies its antiplatelet region
Q35757813	Molecular characterization of two superoxide dismutases from Hydra vulgaris.
Q36490797	Molecular cloning and characterization of an invertebrate cellular retinoic acid binding protein
Q33837897	Molecular cloning, expression pattern, and 3D structural analysis of the MHC class IIB gene in the Chinese longsnout catfish (Leiocassis longirostris).
Q38911329	Molecular docking of Glycine max and Medicago truncatula ureases with urea; bioinformatics approaches
Q47284705	Molecular docking studies of bioactive compounds from Annona muricata Linn as potential inhibitors for Bcl-2, Bcl-w and Mcl-1 antiapoptotic proteins
Q30432604	Molecular dynamic and docking interaction study of Heterodera glycines serine proteinase with Vigna mungo proteinase inhibitor
Q28359593	Molecular dynamics analysis of a second phosphate site in the hemoglobins of the seabird, south polar skua. Is there a site-site migratory mechanism along the central cavity?
Q48046617	Molecular dynamics insights into the structure, function, and substrate binding mechanism of mucin desulfating sulfatase of gut microbe Bacteroides fragilis
Q40441895	Molecular dynamics simulation of the effects of single (S221P) and double (S221P and K216E) mutations in the hemagglutinin protein of influenza A H5N1 virus: a study on host receptor specificity
Q34437608	Molecular inhibition of telomerase recruitment using designer peptides: an in silico approach
Q35146513	Molecular mechanism of species-dependent sweet taste toward artificial sweeteners
Q41339873	Molecular mechanisms governing reading frame choice of immunoglobulin diversity genes
Q34486497	Molecular modeling and MM-PBSA free energy analysis of endo-1,4-β-xylanase from Ruminococcus albus 8
Q39175345	Molecular modeling and identification of substrate binding site of orphan human cytochrome P450 4F22.
Q38982772	Molecular modeling of HIV-1 coreceptor CCR5 and exploring of conformational space of its extracellular domain in molecular dynamics simulation
Q30405488	Molecular modeling of cytochrome b₅ with a single cytochrome c-like thioether linkage
Q42844487	Molecular modeling of the GM-CSF and IL-3 receptor complexes
Q37475556	Molecular modeling of the misfolded insulin subunit and amyloid fibril
Q33523394	Molecular modeling of the reductase domain to elucidate the reaction mechanism of reduction of peptidyl thioester into its corresponding alcohol in non-ribosomal peptide synthetases
Q41426709	Molecular modeling studies of Yersinia pestis dihydrofolate reductase
Q51351693	Molecular modeling, dynamics studies and density functional theory approaches to identify potential inhibitors of SIRT4 protein from Homo sapiens : a novel target for the treatment of type 2 diabetes.
Q41915311	Molecular modeling, dynamics studies and virtual screening of Fructose 1, 6 biphosphate aldolase-II in community acquired- methicillin resistant Staphylococcus aureus (CA-MRSA)
Q33705184	Molecular modeling-based evaluation of hTLR10 and identification of potential ligands in Toll-like receptor signaling
Q30329498	Molecular modelling in structural biology.
Q40509942	Molecular modelling of the nucleotide-binding domain of Wilson's disease protein: location of the ATP-binding site, domain dynamics and potential effects of the major disease mutations
Q30498523	Molecular modelling of urease accessory interaction proteins of Helicobacter Pylori J 99 and predicting an interruption in interaction by Vigna radiata Defensins
Q27731540	Molecular models and structural comparisons of native and mutant class I filamentous bacteriophages Ff (fd, f1, M13), If1 and IKe
Q24798536	Molecular models of NS3 protease variants of the Hepatitis C virus
Q33221618	Molecular models of protein kinase 6 from Plasmodium falciparum
Q46368729	Molecular models of protein targets from Mycobacterium tuberculosis.
Q91940302	Molecular simulation studies on B-cell lymphoma/leukaemia 11A (BCL11A)
Q28552494	Molecular, Biochemical, and Dietary Regulation Features of α-Amylase in a Carnivorous Crustacean, the Spiny Lobster Panulirus argus
Q35755852	Molecular-docking study of malaria drug target enzyme transketolase in Plasmodium falciparum 3D7 portends the novel approach to its treatment
Q34783054	Morphological diversity and polymorphism of self-assembling collagen peptides controlled by length of hydrophobic domains
Q30764897	Motif-based fold assignment
Q39739852	Mouse 11β-hydroxysteroid dehydrogenase type 2 for human application: homology modeling, structural analysis and ligand-receptor interaction.
Q37377101	Multiple approaches converge on the structure of the integrin alphaIIb/beta3 transmembrane heterodimer
Q33720719	Multiple sequence alignment: algorithms and applications
Q64107374	Mutation Spectrum in TPO Gene of Bangladeshi Patients with Thyroid Dyshormonogenesis and Analysis of the Effects of Different Mutations on the Structural Features and Functions of TPO Protein through Approach
Q86602309	Mutations and polymorphisms in the human argininosuccinate lyase (ASL) gene
Q58114859	Mycobacterium tuberculosis serine/threonine protein kinases: structural information for the design of their specific ATP-competitive inhibitors
Q30372362	NMR data-driven structure determination using NMR-I-TASSER in the CASD-NMR experiment.
Q51103266	NMR insight into myosin-binding subunit coiled-coil structure reveals binding interface with protein kinase G-Iα leucine zipper in vascular function.
Q27937608	Naf1 p is a box H/ACA snoRNP assembly factor
Q49959760	Nanoparticle Fullerene (C60) demonstrated stable binding with antibacterial potential towards probable targets of drug resistant Salmonella typhi - a computational perspective and in vitro investigation.
Q26738414	Natural Inhibitors of Snake Venom Metalloendopeptidases: History and Current Challenges
Q33327375	Nature of protein family signatures: insights from singular value analysis of position-specific scoring matrices
Q37329806	Neofunctionalization of zona pellucida proteins enhances freeze-prevention in the eggs of Antarctic notothenioids.
Q34435825	Neutral networks in protein space: a computational study based on knowledge-based potentials of mean force
Q26766568	New Biological Insights from Better Structure Models
Q36924796	New developments of a transcription factors database
Q30153347	New insights into the mechanism of chloroplast protein import and its integration with protein quality control, organelle biogenesis and development
Q30981671	New local potential useful for genome annotation and 3D modeling
Q42962492	New members of the brachyurins family in lobster include a trypsin-like enzyme with amino acid substitutions in the substrate-binding pocket.
Q40533143	New programs for protein tertiary structure prediction
Q31118806	New tools for targeted disruption of cholinergic synaptic transmission in Drosophila melanogaster
Q28484292	Non-traditional antibacterial screening approaches for the identification of novel inhibitors of the glyoxylate shunt in gram-negative pathogens
Q27729885	Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure
Q46713143	Novel cyclophilin D inhibitors derived from quinoxaline exhibit highly inhibitory activity against rat mitochondrial swelling and Ca2+ uptake/ release
Q30355189	Novel knowledge-based mean force potential at the profile level
Q36284049	Novel molecular, structural and evolutionary characteristics of the phosphoketolases from bifidobacteria and Coriobacteriales.
Q35227911	Oligomerization mechanisms of an H-NS family protein, Pmr, encoded on the plasmid pCAR1 provide a molecular basis for functions of H-NS family members
Q28580894	Oligomerization properties of ERp29, an endoplasmic reticulum stress protein
Q40392585	Oligopeptidase B and B2: comparative modelling and virtual screening as searching tools for new antileishmanial compounds.
Q52078678	On the design and analysis of protein folding potentials.
Q56272039	On the evolution of primitive genetic codes
Q30352967	On the origin and highly likely completeness of single-domain protein structures.
Q36631429	On the properties and sequence context of structurally ambivalent fragments in proteins
Q35131679	On the structure and function of apolipoproteins: more than a family of lipid-binding proteins
Q36091068	On the thermodynamic hypothesis of protein folding
Q30371486	Optimal contact map alignment of protein-protein interfaces
Q37035526	Optimal protein-folding codes from spin-glass theory
Q30431032	Optimizing energy potentials for success in protein tertiary structure prediction.
Q38316334	Optimizing lactose hydrolysis by computer-guided modification of the catalytic site of a wild-type enzyme.
Q34333541	Organization of the G protein-coupled receptors rhodopsin and opsin in native membranes
Q30421773	Origins of structural diversity within sequentially identical hexapeptides
Q34278221	Outer pore topology of the ECaC-TRPV5 channel by cysteine scan mutagenesis
Q30378590	PROTDES: CHARMM toolbox for computational protein design.
Q30333038	PROTINFO: Secondary and tertiary protein structure prediction.
Q82907794	PSS-3D1D: an improved 3D1D profile method of protein fold recognition for the annotation of twilight zone sequences
Q30390048	PUDGE: a flexible, interactive server for protein structure prediction
Q59328919	Paradigm Shift in Drug Re-purposing From Phenalenone to Phenaleno-Furanone to Combat Multi-Drug Resistant Serovar Typhi
Q33887990	Parameter optimized surfaces (POPS): analysis of key interactions and conformational changes in the ribosome
Q40961669	Partition of aminoacyl-tRNA synthetases in two different structural classes dating back to early metabolism: implications for the origin of the genetic code and the nature of protein sequences
Q30325672	Patterned library analysis: a method for the quantitative assessment of hypotheses concerning the determinants of protein structure.
Q38513300	Perceptron learning of pairwise contact energies for proteins incorporating the amino acid environment
Q27638712	Phage P4 origin-binding domain structure reveals a mechanism for regulation of DNA-binding activity by homo- and heterodimerization of winged helix proteins
Q50133786	PhcrTx2, a New Crab-Paralyzing Peptide Toxin from the Sea Anemone Phymanthus crucifer.
Q28587202	Phosphoinositide-dependent activation of the ADP-ribosylation factor GTPase-activating protein ASAP1. Evidence for the pleckstrin homology domain functioning as an allosteric site
Q30422300	Phyletic relationships of protein structures based on spatial preference of residues
Q46367207	Phylogenetic and computational structural analysis of VP7 gene of group a human rotavirus G1P[8] strains obtained in Sapporo, Japan from 1987 to 2000.
Q42404452	Phylogeny and structure of the cinnamyl alcohol dehydrogenase gene family in Brachypodium distachyon
Q27345457	Picomolar Inhibition of Plasmepsin V, an Essential Malaria Protease, Achieved Exploiting the Prime Region
Q27972950	Plasmodium falciparum Hsp70-x: a heat shock protein at the host-parasite interface
Q37598689	Platelet microbicidal protein 1: structural themes of a multifunctional antimicrobial peptide
Q52067226	PoPMuSiC, an algorithm for predicting protein mutant stability changes: application to prion proteins.
Q91942435	Porphyromonas gingivalis PgFur Is a Member of a Novel Fur Subfamily With Non-canonical Function
Q41384799	Positive Darwinian selection on two homologous fertilization proteins: what is the selective pressure driving their divergence?
Q50963232	Potent and selective inhibitors of Staphylococcus epidermidis tryptophanyl-tRNA synthetase.
Q41052943	Potential energy functions for threading
Q40565548	Potential for dramatic improvement in sequence alignment against structures of remote homologous proteins by extracting structural information from multiple structure alignment
Q21562146	Potentials of mean force for protein structure prediction vindicated, formalized and generalized
Q24806232	Practical lessons from protein structure prediction
Q34447869	Pre-metazoan origins and evolution of the cadherin adhesome
Q35906471	PredRSA: a gradient boosted regression trees approach for predicting protein solvent accessibility
Q40805925	Predicted complementarity determining regions of the T cell antigen receptor determine antigen specificity
Q30176558	Predicted structure of the extracellular region of ligand-gated ion-channel receptors shows SH2-like and SH3-like domains forming the ligand-binding site
Q42603319	Predicted topology of the N-terminal domain of the hydrophilic subunit of the mannose transporter of Escherichia coli
Q29616472	Predicting coiled coils by use of pairwise residue correlations
Q43505149	Predicting functional residues of the Solanum lycopersicum aspartic protease inhibitor (SLAPI) by combining sequence and structural analysis with molecular docking
Q36279334	Predicting oligomerization states of coiled coils
Q52403630	Predicting secondary structures of membrane proteins with neural networks.
Q42086275	Predicting the tertiary structure of a lattice designed model protein from its primary structure
Q40775415	Prediction and analysis of structure, stability and unfolding of thermolysin-like proteases
Q30397288	Prediction of Local Quality of Protein Structure Models Considering Spatial Neighbors in Graphical Models
Q93015838	Prediction of Structure and Molecular Interaction with DNA of BvrR, a Virulence-Associated Regulatory Protein of Brucella
Q36278931	Prediction of polyelectrolyte polypeptide structures using Monte Carlo conformational search methods with implicit solvation modeling
Q38571502	Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments
Q30410132	Prediction of protein tertiary structures using MUFOLD
Q33395077	Prediction of protein-protein binding site by using core interface residue and support vector machine
Q30365195	Prediction of side chain orientations in proteins by statistical machine learning methods.
Q39281418	Prediction of the Human EP1 Receptor Binding Site by Homology Modeling and Molecular Dynamics Simulation
Q44646818	Prediction of the key binding site of odorant-binding protein of Holotrichia oblita Faldermann (Coleoptera: Scarabaeida).
Q40941083	Prediction of the secondary structure of HIV-1 gp120.
Q54633243	Prediction of the structural similarity between spermidine/putrescine-binding protein and maltose-binding protein.
Q30333132	Pretty good guessing: protein structure prediction at CASP5
Q42272639	Preventing the return of smallpox: molecular modeling studies on thymidylate kinase from Variola virus
Q37373871	Prion protein misfolding and disease
Q83958153	Probing ligand binding modes of Mycobacterium tuberculosis MurC ligase by molecular modeling, dynamics simulation and docking
Q42142219	Probing protein fold space with a simplified model
Q21142748	Prodepth: predict residue depth by support vector regression approach from protein sequences only
Q64098493	Production and Characterization of Recombinant Wild Type Uricase from Indonesian Coelacanth () and Improvement of Its Thermostability by In Silico Rational Design and Disulphide Bridges Engineering
Q41183961	Profile conditional random fields for modeling protein families with structural information
Q22251179	Progress and challenges in protein structure prediction
Q30427655	Progress in protein structure prediction
Q52520638	Proline scanning mutagenesis of a molten globule reveals non-cooperative formation of a protein's overall topology.
Q37482086	Proposed mechanism for stability of proteins to evolutionary mutations
Q60093430	Proteases: to each his own
Q55399112	Protein Solvent-Accessibility Prediction by a Stacked Deep Bidirectional Recurrent Neural Network.
Q28244182	Protein alchemy: changing beta-sheet into alpha-helix
Q40065481	Protein crystallography and drug discovery: recollections of knowledge exchange between academia and industry
Q30424604	Protein design automation
Q27687870	Protein design by fusion: implications for protein structure prediction and evolution
Q47820233	Protein design: a perspective from simple tractable models
Q40775421	Protein fold recognition
Q72235910	Protein fold recognition
Q52077268	Protein fold recognition by total alignment probability.
Q36280626	Protein fold recognition without Boltzmann statistics or explicit physical basis
Q47900360	Protein folding and wring resonances
Q36472755	Protein folding thermodynamics and dynamics: where physics, chemistry, and biology meet
Q30326125	Protein folding using contact maps.
Q36053905	Protein folding--what's the question?
Q30427987	Protein folding: the endgame
Q30276733	Protein rethreading: A novel approach to protein design
Q27860483	Protein secondary structure prediction based on position-specific scoring matrices
Q38558040	Protein secondary structure prediction using local alignments
Q30418059	Protein structural similarities predicted by a sequence-structure compatibility method
Q30327144	Protein structure alignment using environmental profiles.
Q30350916	Protein structure modeling in the proteomics era.
Q30391311	Protein structure modelling and evaluation based on a 4-distance description of side-chain interactions
Q92254314	Protein structure prediction
Q30426891	Protein structure prediction force fields: parametrization with quasi-newtonian dynamics
Q30326890	Protein structure prediction in the postgenomic era.
Q30366789	Protein structure prediction provides comparable performance to crystallographic structures in docking-based virtual screening.
Q30328303	Protein structure similarities.
Q47638047	Protein structure. Prediction of progress at last
Q30426475	Protein structure: what is it possible to predict now?
Q28242652	Protein superfamilies and domain superfolds
Q37219203	Protein tertiary structure recognition using optimized Hamiltonians with local interactions
Q33951847	Protein threading by learning
Q55514102	Protein threading using residue co-variation and deep learning.
Q84078785	Protein-protein docking on molecular models of Aspergillus niger RNase and human actin: novel target for anticancer therapeutics
Q46273690	Proteomic Mapping of Dental Enamel Matrix from Inbred Mouse Strains: Unraveling Potential New Players in Enamel
Q28396615	Purification, Cloning and Immuno-Biochemical Characterization of a Fungal Aspartic Protease Allergen Rhi o 1 from the Airborne Mold Rhizopus oryzae
Q41760432	Purification, characterization and molecular cloning of trichoanguin, a novel type I ribosome-inactivating protein from the seeds of Trichosanthes anguina
Q45029743	Purine salvage in Methanocaldococcus jannaschii: Elucidating the role of a conserved cysteine in adenine deaminase
Q31098076	Quality assessment of protein model-structures based on structural and functional similarities
Q40408638	Quality assessment of protein model-structures using evolutionary conservation
Q39723797	Quantitative parameters for amino acid-base interaction: implications for prediction of protein-DNA binding sites
Q47303868	Rapid and reliable protein structure determination via chemical shift threading
Q57829869	Rapid protein fold determination using secondary chemical shifts and cross-hydrogen bond 15N-13C' scalar couplings (3hbJNC')
Q58882356	Reading the three-dimensional structure of lattice model-designed proteins from their amino acid sequence
Q33443633	Recent advances in computer-aided drug design
Q30392259	Recent advances in sequence-based protein structure prediction
Q36278812	Recognition of related proteins by iterative template refinement (ITR)
Q30391508	Recognizing protein substructure similarity using segmental threading
Q38978554	Recombinant exochitinase of the thermophilic mould Myceliopthora thermophila BJA: Characteristics and utility in generating N-acetyl glucosamine and in biocontrol of phytopathogenic fungi
Q48095755	Reconstructed ancestral enzymes reveal that negative selection drove the evolution of substrate specificity in ADP-dependent kinases
Q39872307	Reconstructing protein structures by neural network pairwise interaction fields and iterative decoy set construction
Q30157238	Reconstruction and stability of secondary structure elements in the context of protein structure prediction
Q40780634	Redesigning the hydrophobic core of a model beta-sheet protein: destabilizing traps through a threading approach
Q36389629	Reduced C(beta) statistical potentials can outperform all-atom potentials in decoy identification
Q24675451	Refined structure of dimeric diphtheria toxin at 2.0 A resolution
Q24675434	Refined structure of monomeric diphtheria toxin at 2.3 A resolution
Q57417820	Regulation of adenylyl cyclase in LTP
Q38271614	Remote homologue identification of Drosophila GAGA factor in mouse.
Q30373776	Residue contact-count potentials are as effective as residue-residue contact-type potentials for ranking protein decoys.
Q36278594	Residue-residue contact substitution probabilities derived from aligned three-dimensional structures and the identification of common folds
Q67843683	Residues in the longitudinal, hydrophobic strip-of-helix relate to terminations and crossings of alpha-helices
Q34845135	Restricted sidechain plasticity in the structures of native proteins and complexes
Q42750175	Revisiting gap locations in amino acid sequence alignments and a proposal for a method to improve them by introducing solvent accessibility
Q41175963	Ribonucleotide Reductases from Bifidobacteria Contain Multiple Conserved Indels Distinguishing Them from All Other Organisms: In Silico Analysis of the Possible Role of a 43 aa Bifidobacteria-Specific Insert in the Class III RNR Homolog
Q35794575	Role of electrostatic interactions in amyloid beta-protein (A beta) oligomer formation: a discrete molecular dynamics study
Q28242002	Role of galectin-8 as a modulator of cell adhesion and cell growth
Q36106109	Role of the purine repressor hinge sequence in repressor function
Q51649868	Roles of electrostatic interaction in proteins.
Q33590806	Rupintrivir is a promising candidate for treating severe cases of Enterovirus-71 infection
Q57014484	SEQSEE: a comprehensive program suite for protein sequence analysis
Q93048662	SET domain containing 1B gene is mutated in primary hepatic neuroendocrine tumors
Q35763422	SFESA: a web server for pairwise alignment refinement by secondary structure shifts
Q30976450	SKPDB: a structural database of shikimate pathway enzymes.
Q30396131	SLC4A11 Three-Dimensional Homology Model Rationalizes Corneal Dystrophy-Causing Mutations
Q35158847	SMOQ: a tool for predicting the absolute residue-specific quality of a single protein model with support vector machines
Q35597302	STRIKE: evaluation of protein MSAs using a single 3D structure
Q30354381	SVR_CAF: an integrated score function for detecting native protein structures among decoys.
Q41109981	Scores for sequence searches and alignments
Q36282002	Scoring functions in protein folding and design
Q35864452	Screening and Evaluation of Deleterious SNPs in APOE Gene of Alzheimer's Disease
Q33457038	Screening efficient BH3-mimetics to hBcl-B by means of peptidodynmimetic method.
Q33258062	Searching for interpretable rules for disease mutations: a simulated annealing bump hunting strategy
Q46217877	Secondary structure prediction and unrefined tertiary structure prediction for cyclin A, B, and D.
Q35073856	Selecting protein targets for structural genomics of Pyrobaculum aerophilum: validating automated fold assignment methods by using binary hypothesis testing
Q42725770	Selective Assembly of Na,K-ATPase α2β2 Heterodimers in the Heart: DISTINCT FUNCTIONAL PROPERTIES AND ISOFORM-SELECTIVE INHIBITORS.
Q36279929	Self-consistently optimized statistical mechanical energy functions for sequence structure alignment
Q43018409	Sequence and structural investigation of a novel psychrophilic α-amylase from Glaciozyma antarctica PI12 for cold-adaptation analysis
Q35051539	Sequence and structure based models of HIV-1 protease and reverse transcriptase drug resistance
Q72271832	Sequence into structure
Q30358116	Sequence representation and prediction of protein secondary structure for structural motifs in twilight zone proteins.
Q30736511	Sequence requirements of the GPNG beta-turn of the Ecballium elaterium trypsin inhibitor II explored by combinatorial library screening
Q28283891	Sequence space, folding and protein design
Q36281436	Sequence specificity, statistical potentials, and three-dimensional structure prediction with self-correcting distance geometry calculations of beta-sheet formation in proteins
Q37350690	Sequence-structure matching in globular proteins: application to supersecondary and tertiary structure determination
Q33448603	Sequencing and characterization of asclepain f: the first cysteine peptidase cDNA cloned and expressed from Asclepias fruticosa latex
Q38835560	Sequential epitopes of Dermatophagoides farinae allergens identified using peptide microarray-based immunoassay
Q33367114	Side-chain entropy and packing in proteins
Q52281794	Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies.
Q46950069	Simulations of SIN mutations and histone variants in human nucleosomes reveal altered protein-DNA and core histone interactions
Q73621472	Simultaneous and coupled energy optimization of homologous proteins: a new tool for structure prediction
Q55227349	Simultaneous cell disruption and semi-quantitative activity assays for high-throughput screening of thermostable L-asparaginases.
Q30413306	Simultaneous single-structure and bundle representation of protein NMR structures in torsion angle space
Q35563495	Site-directed mutagenesis of human cytosolic sulfotransferase (SULT) 2B1b to phospho-mimetic Ser348Asp results in an isoform with increased catalytic activity
Q36397615	Site-saturation mutagenesis library construction and screening for specific broad-spectrum single-domain antibodies against multiple Cry1 toxins
Q27675356	Solution Structures, Dynamics, and Ice Growth Inhibitory Activity of Peptide Fragments Derived from an Antarctic Yeast Protein
Q57387740	Some operations research methods for analyzing protein sequences and structures
Q47252200	Spatial, sequence-order-independent structural comparison of alpha/beta proteins: evolutionary implications
Q41852811	Specificity determinants of acylaminoacyl‐peptide hydrolase
Q58882362	Stability of Designed Proteins against Mutations
Q36332947	Statistical mechanics of protein-like heteropolymers
Q29615145	Statistical potential for assessment and prediction of protein structures
Q30329417	Statistical potentials for fold assessment.
Q47982690	Statistical properties of neutral evolution
Q33226090	Statistical theory for protein ensembles with designed energy landscapes
Q42061614	Stochastic reconstruction of protein structures from effective connectivity profiles
Q58993920	Structural Analysis of Respirasomes in Electron Transfer Pathway of Acidithiobacillus ferrooxidans: A Computer-Aided Molecular Designing Study
Q92704126	Structural Characterization of the CD44 Stem Region for Standard and Cancer-Associated Isoforms
Q27644850	Structural Insights into the Evolution of a Non-Biological Protein: Importance of Surface Residues in Protein Fold Optimization
Q58776853	Structural Prediction and Mutational Analysis of Rv3906c Gene of HRv to Determine Its Essentiality in Survival
Q28547968	Structural Studies of the HIV-1 Integrase Protein: Compound Screening and Characterization of a DNA-Binding Inhibitor
Q42842990	Structural analysis based on state-space modeling
Q74346881	Structural and functional analysis of the two haemoglobins of the antarctic seabird Catharacta maccormicki characterization of an additional phosphate binding site by molecular modelling
Q57065410	Structural and functional characterization for interaction of silver nanoparticles with ergostrol in Trichoderma harzianum
Q46486615	Structural and functional characterization of AtPTR3, a stress-induced peptide transporter of Arabidopsis.
Q103804490	Structural and functional characterization of M. tuberculosis sedoheptulose- 7-phosphate isomerase, a critical enzyme involved in lipopolysaccharide biosynthetic pathway
Q24616322	Structural and functional characterization of the VirB5 protein from the type IV secretion system encoded by the conjugative plasmid pKM101
Q57752379	Structural bases of GM1 gangliosidosis and Morquio B disease
Q36416631	Structural biology and bioinformatics in drug design: opportunities and challenges for target identification and lead discovery
Q35237594	Structural biology and diabetes mellitus: molecular pathogenesis and rational drug design
Q28259532	Structural biology and drug discovery
Q28186183	Structural biology. Learning to speak the language of proteins
Q36140378	Structural characterization and corepressor binding of the Escherichia coli purine repressor
Q24802710	Structural characterization of genomes by large scale sequence-structure threading
Q35946562	Structural characterization of the C-terminal coiled-coil domains of wild-type and kidney disease-associated mutants of apolipoprotein L1.
Q57904799	Structural comparisons among the short-chain helical cytokines
Q41741193	Structural genomics of microbes: an objective
Q35204026	Structural genomics: computational methods for structure analysis
Q30444054	Structural homology between rbs repressor and ribose binding protein implies functional similarity
Q36634337	Structural insights into Cydia pomonella pheromone binding protein 2 mediated prediction of potentially active semiochemicals
Q36396561	Structural insights into a key carotenogenesis related enzyme phytoene synthase of P. falciparum: a novel drug target for malaria
Q39000675	Structural insights into human microsomal epoxide hydrolase by combined homology modeling, molecular dynamics simulations, and molecular docking calculations
Q46279646	Structural insights into natural compounds as inhibitors of Fasciola gigantica thioredoxin glutathione reductase
Q28474501	Structural model of the Rev regulatory protein from equine infectious anemia virus
Q73832209	Structural requirement of highly-conserved residues in globins
Q39795990	Structural studies of the protein endostatin in fusion with BAX BH3 death domain, a hybrid that presents enhanced antitumoral activity
Q42062195	Structural-functional characterization of the cathodic haemoglobin of the conger eel Conger conger: molecular modelling study of an additional phosphate-binding site
Q51223346	Structure Prediction of a Novel Exo-β-1,3-Glucanase: Insights into the Cold Adaptation of Psychrophilic Yeast Glaciozyma antarctica PI12.
Q51608273	Structure and dynamics of H. pylori 98-10 C5-cytosine specific DNA methyltransferase in complex with S-adenosyl-l-methionine and DNA.
Q35535758	Structure based annotation of Helicobacter pylori strain 26695 proteome
Q36074428	Structure elucidation and biological activity of antibacterial compound from Micromonospora auratinigra, a soil Actinomycetes.
Q41616099	Structure in the channel forming domain of colicin E1 bound to membranes: the 402-424 sequence
Q25256886	Structure modeling of all identified G protein-coupled receptors in the human genome
Q27730951	Structure of S-lectin, a developmentally regulated vertebrate beta-galactoside-binding protein
Q27730230	Structure of a protein in a kinetic trap
Q27730914	Structure of restriction endonuclease bamhi phased at 1.95 A resolution by MAD analysis
Q89540159	Structure prediction of transferrin receptor protein 1 (TfR1) by homology modelling, docking, and molecular dynamics simulation studies
Q36282777	Structure, kinetic characterization and subcellular localization of the two ribulose 5-phosphate epimerase isoenzymes from Trypanosoma cruzi
Q35941215	Structure-Activity Relationship Studies of N- and C-Terminally Modified Secretin Analogs for the Human Secretin Receptor
Q33263149	Structure-based discovery of inhibitors of the YycG histidine kinase: new chemical leads to combat Staphylococcus epidermidis infections
Q30420492	Structure-based identification and clustering of protein families and superfamilies
Q41052933	Structure-derived potentials and protein simulations
Q57957053	Structures of scrambled disulfide forms of the potato carboxypeptidase inhibitor predicted by molecular dynamics simulations with constraints
Q24562918	Structures of the apo- and the metal ion-activated forms of the diphtheria tox repressor from Corynebacterium diphtheriae
Q30390045	Sub-AQUA: real-value quality assessment of protein structure models
Q44994541	Substrate specificity engineering of Escherichia coli derived fructosamine 6-kinase
Q36558623	Systems engineering of tyrosine 195, tyrosine 260, and glutamine 265 in cyclodextrin glycosyltransferase from Paenibacillus macerans to enhance maltodextrin specificity for 2-O-(D)-glucopyranosyl-(L)-ascorbic acid synthesis
Q35128951	TASSER-Lite: an automated tool for protein comparative modeling
Q30391461	TASSER_low-zsc: an approach to improve structure prediction using low z-score-ranked templates
Q58724892	THE-DB: a threading model database for comparative protein structure analysis of the E. coli K12 and human proteomes
Q42108282	THUMP from archaeal tRNA:m22G10 methyltransferase, a genuine autonomously folding domain
Q37635270	TLR9 and MyD88 are crucial for the maturation and activation of dendritic cells by paromomycin-miltefosine combination therapy in visceral leishmaniasis
Q30333234	TOUCHSTONE II: a new approach to ab initio protein structure prediction
Q33247054	Taking U out, with two nucleases?
Q64057387	Targeting the neuronal calcium sensor DREAM with small-molecules for Huntington's disease treatment
Q52597741	Targeting the polyadenylation factor EhCFIm25 with RNA aptamers controls survival in Entamoeba histolytica.
Q51061506	Targeting the ubiquitin-conjugating enzyme E2D4 for cancer drug discovery-a structure-based approach.
Q40918119	Temperature dependence of estrogen binding: importance of a subzone in the ligand binding domain of a novel piscine estrogen receptor
Q24561937	Template-based protein structure modeling
Q30419445	Template-based protein structure modeling using the RaptorX web server.
Q30378816	Template-based protein structure prediction in CASP11 and retrospect of I-TASSER in the last decade.
Q47361532	Template-based quaternary structure prediction of proteins using enhanced profile-profile alignments.
Q37699214	Template-based structure modeling of protein-protein interactions
Q27765714	The 1.8 A crystal structure of the ycaC gene product from Escherichia coli reveals an octameric hydrolase of unknown specificity
Q24545011	The 3D profile method for identifying fibril-forming segments of proteins
Q24673162	The BPI/LBP family of proteins: a structural analysis of conserved regions
Q41931296	The C-terminal extension of human RTEL1, mutated in Hoyeraal-Hreidarsson syndrome, contains harmonin-N-like domains.
Q92134796	The Comparison Between the Mutated HuIFN-β 27-101 and the Wild Type Interferon β: the Comprehensive In Silico Study to Evaluate the Effect of Mutations on IFN-β
Q34441899	The Dorsal Rel homology domain plays an active role in transcriptional regulation
Q40523775	The FNR family of transcriptional regulators
Q30395936	The Framework of Computational Protein Design
Q28755202	The NMR solution structure of the 30S ribosomal protein S27e encoded in gene RS27_ARCFU of Archaeoglobus fulgidis reveals a novel protein fold
Q38826829	The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design.
Q98771866	The Sequence and Three-Dimensional Structure Characterization of Snake Venom Phospholipases B
Q96641807	The Se…S/N interactions as a possible mechanism of δ-aminolevulinic acid dehydratase enzyme inhibition by organoselenium compounds: A computational study
Q27641705	The Staphostatin-staphopain complex: a forward binding inhibitor in complex with its target cysteine protease
Q36957295	The V1-V3 region of a brain-derived HIV-1 envelope glycoprotein determines macrophage tropism, low CD4 dependence, increased fusogenicity and altered sensitivity to entry inhibitors
Q34461980	The Venus flytrap of periplasmic binding proteins: an ancient protein module present in multiple drug receptors
Q27742597	The X-ray structure of the PurR-guanine-purF operator complex reveals the contributions of complementary electrostatic surfaces and a water-mediated hydrogen bond to corepressor specificity and binding affinity
Q33727025	The bldB gene encodes a small protein required for morphogenesis, antibiotic production, and catabolite control in Streptomyces coelicolor
Q32084472	The bldD gene of Streptomyces coelicolor A3(2): a regulatory gene involved in morphogenesis and antibiotic production.
Q40535237	The blind watchmaker and rational protein engineering
Q40852750	The cGMP-dependent protein kinase--gene, protein, and function
Q24562052	The crystal structure of a mutant protein with altered but improved hydrophobic core packing
Q27733159	The crystal structure of the immunity protein of colicin E7 suggests a possible colicin-interacting surface
Q30424845	The current state of the art in protein structure prediction
Q24301782	The cytosolic carboxypeptidases CCP2 and CCP3 catalyze posttranslational removal of acidic amino acids
Q30168443	The design of a hyperstable mutant of the Abp1p SH3 domain by sequence alignment analysis
Q30332272	The directional atomic solvation energy: an atom-based potential for the assignment of protein sequences to known folds.
Q42094108	The distribution of alpha-helix propensity along the polypeptide chain is not conserved in proteins from the same family
Q28587209	The diterpenoid alkaloid noroxoaconitine is a Mapkap kinase 5 (MK5/PRAK) inhibitor
Q52764349	The effect of conformational variability of phosphotriesterase upon N-acyl-L-homoserine lactone and paraoxon binding: insights from molecular dynamics studies.
Q53630745	The energy landscape of a protein switch.
Q30168528	The identification of conserved interactions within the SH3 domain by alignment of sequences and structures
Q30421420	The importance of short structural motifs in protein structure analysis
Q39453992	The inverse protein folding question and simulated molecular evolution
Q30327415	The new architectonics: an invitation to structural biology.
Q60214239	The primary structure of inhibitor of cysteine proteinases from potato
Q24545753	The proofreading domain of Escherichia coli DNA polymerase I and other DNA and/or RNA exonuclease domains
Q22248093	The protein structure prediction problem could be solved using the current PDB library
Q22066280	The reducible complexity of a mitochondrial molecular machine
Q43457215	The residue 179 is involved in product specificity of the Bacillus circulans DF 9R cyclodextrin glycosyltransferase
Q46295990	The role of Zn2+, dimerization and N-glycosylation in the interaction of Auxin-Binding Protein 1 (ABP1) with different auxins.
Q44060661	The role of hydrophobic microenvironments in modulating pKa shifts in proteins.
Q36463402	The role of molecular modelling in biomedical research
Q30390007	The role of secondary structure in protein structure selection
Q44680150	The role of site-directed point mutations in protein misfolding.
Q24673989	The structural alignment between two proteins: is there a unique answer?
Q27621369	The structure of adenylosuccinate lyase, an enzyme with dual activity in the de novo purine biosynthetic pathway
Q30193951	The tyrosine corner: a feature of most Greek key beta-barrel proteins
Q38331459	The vaccinia virus 14-kilodalton (A27L) fusion protein forms a triple coiled-coil structure and interacts with the 21-kilodalton (A17L) virus membrane protein through a C-terminal alpha-helix
Q52340261	The α-helix as seen from the protein tertiary structure: a 3-D structural classification
Q40425225	Theoretical approaches to designing novel sequences to fit a given fold
Q44274365	Theoretical study on the interaction of pyrrolopyrimidine derivatives as LIMK2 inhibitors: insight into structure-based inhibitor design
Q36639495	Thermodynamic environments in proteins: fundamental determinants of fold specificity
Q30159682	Thermodynamic features characterizing good and bad folding sequences obtained using a simplified off-lattice protein model.
Q30328135	Thermodynamic propensities of amino acids in the native state ensemble: implications for fold recognition.
Q41111018	Threading thrills and threats
Q40760708	Three amino acid residues of an odorant-binding protein are involved in binding odours in Loxostege sticticalis L.
Q42215981	Three-Dimensional Structure of Arabidopsis thaliana Lipase Predicted by Homology Modeling Method
Q46334745	Three-dimensional profiles for measuring compatibility of amino acid sequence with three-dimensional structure
Q36104536	Three-dimensional profiles from residue-pair preferences: identification of sequences with beta/alpha-barrel fold
Q41070184	Three-dimensional structure model and predicted ATP interaction rewiring of a deviant RNA ligase 2.
Q54584895	Three-dimensional structure of a DNA repair enzyme, 3-methyladenine DNA glycosylase II, from Escherichia coli.
Q36280466	Three-dimensional structures and contexts associated with recurrent amino acid sequence patterns
Q33625318	Three-tier regulation of cell number plasticity by neurotrophins and Tolls in Drosophila
Q35021053	Thyroid and bone: macrophage-derived TSH-β splice variant increases murine osteoblastogenesis.
Q57014399	Tools for Protein Technologies
Q43183133	Toward a consensus model of the HERG potassium channel
Q30421206	Toward optimal fragment generations for ab initio protein structure assembly
Q30374872	Towards comprehensive structural motif mining for better fold annotation in the "twilight zone" of sequence dissimilarity.
Q36825878	Towards meeting the Paracelsus Challenge: The design, synthesis, and characterization of paracelsin-43, an alpha-helical protein with over 50% sequence identity to an all-beta protein
Q38287761	Transglycosylation by a chitinase from Enterobacter cloacae subsp. cloacae generates longer chitin oligosaccharides
Q38320328	Transglycosylation by chitinase D from Serratia proteamaculans improved through altered substrate interactions.
Q30165221	Triage protein fold prediction
Q46128578	Two aspartate residues at the putative p10 subunit of a type II metacaspase from Nicotiana tabacum L. may contribute to the substrate-binding pocket.
Q24299965	Two different contact sites are recruited by cardiotrophin-like cytokine (CLC) to generate the CLC/CLF and CLC/sCNTFRalpha composite cytokines
Q51508147	Uncovering symmetry-breaking vector and reliability order for assigning secondary structures of proteins from atomic NMR chemical shifts in amino acids.
Q37188269	Uncovering the properties of energy-weighted conformation space networks with a hydrophobic-hydrophilic model
Q57829383	Understanding conserved amino acids in proteins
Q39260601	Understanding human thiol dioxygenase enzymes: structure to function, and biology to pathology
Q37348927	Understanding the role of argininosuccinate lyase transcript variants in the clinical and biochemical variability of the urea cycle disorder argininosuccinic aciduria.
Q64964815	Understanding xylose isomerase from Burkholderia cenocepacia: insights into structure and functionality for ethanol production.
Q73174194	Universality and diversity of the protein folding scenarios: a comprehensive analysis with the aid of a lattice model
Q41207020	Unstable argininosuccinate lyase in variant forms of the urea cycle disorder argininosuccinic aciduria
Q34340115	Upregulation of the transcript level of GTPase activating protein KIAA0603 in T cells from patients with atopic dermatitis.
Q36282193	Use of residue pairs in protein sequence-sequence and sequence-structure alignments
Q54520094	Use of very long-distance NOEs in a fully deuterated protein: an approach for rapid protein fold determination.
Q30408153	Using structure to explore the sequence alignment space of remote homologs
Q29615886	VERIFY3D: assessment of protein models with three-dimensional profiles
Q34106370	VITAL NMR: using chemical shift derived secondary structure information for a limited set of amino acids to assess homology model accuracy.
Q30358168	Vaccinia viral protein A27 is anchored to the viral membrane via a cooperative interaction with viral membrane protein A17
Q30367436	Validation of protein models by a neural network approach.
Q34214590	Virtual screening of AmpC/β-lactamase as target for antimicrobial resistance in Pseudomonas aeruginosa
Q41675315	Virtual screening of potential inhibitor against FtsZ protein from Staphylococcus aureus
Q30417147	What is the best reference state for designing statistical atomic potentials in protein structure prediction?
Q42257061	What should the Z-score of native protein structures be?
Q89208179	Whole-exome sequencing analysis reveals co-segregation of a COL20A1 missense mutation in a Pakistani family with striate palmoplantar keratoderma
Q42845241	Xylanase homology modeling using the inverse protein folding approach
Q92880985	cyp51A Mutations, Extrolite Profiles, and Antifungal Susceptibility in Clinical and Environmental Isolates of the Aspergillus viridinutans Species Complex
Q33957558	miR-2909-mediated regulation of KLF4: a novel molecular mechanism for differentiating between B-cell and T-cell pediatric acute lymphoblastic leukemias
Q24812204	nsSNPAnalyzer: identifying disease-associated nonsynonymous single nucleotide polymorphisms
Q41685839	p53 Family members p63 and p73 are SAM domain-containing proteins

P356	DOI	10.1126/SCIENCE.1853201
P953	full work available at URL	https://syndication.highwire.org/content/doi/10.1126/science.1853201
P3181	OpenCitations bibliographic resource ID	1219793
P698	PubMed publication ID	1853201
P5875	ResearchGate publication ID	21303185

P2093	author name string	D. Eisenberg
		R. Lüthy
		J. U. Bowie
P2860	cites work	Profile analysis: detection of distantly related proteins	Q24606115
		Molecular technology: Designing proteins and peptides	Q59082891
		Alternative packing arrangements in the hydrophobic core of λrepresser	Q59096694
		Predicted structure of the sugar-binding site of the lac repressor	Q64517266
		Protein folding	Q66884110
		Structure of myoglobin refined at 2-0 A resolution. I. Crystallographic refinement of metmyoglobin from sperm whale	Q67557477
		The evolution of protein structures	Q68715061
		Protein architecture and the origin of introns	Q68715101
		The exon theory of genes	Q69034342
		Determinants of a protein fold. Unique features of the globin amino acid sequences	Q69403260
		Structure of a complex of catabolite gene activator protein and cyclic AMP refined at 2.5 A resolution	Q69817006
		Identification of protein sequence homology by consensus template alignment	Q70295117
		Evolution of proteins formed by beta-sheets. II. The core of the immunoglobulin domains	Q70606781
		Tests for comparing related amino-acid sequences. Cytochrome c and cytochrome c551	Q95394191
		Molecular engineering: An approach to the development of general capabilities for molecular manipulation	Q24620162
		A comprehensive set of sequence analysis programs for the VAX	Q26778432
		Three-dimensional structure of the ATPase fragment of a 70K heat-shock cognate protein	Q27667092
		Atomic structure of the actin:DNase I complex	Q27685392
		Chemica scripta	Q27714935
		Contributions of hydrogen bonds of Thr 157 to the thermodynamic stability of phage T4 lysozyme	Q27728523
		Replacements of Pro86 in phage T4 lysozyme extend an alpha-helix but do not alter protein stability	Q27728571
		A general method applicable to the search for similarities in the amino acid sequence of two proteins	Q27860563
		The interpretation of protein structures: Estimation of static accessibility	Q27860750
		The Protein Data Bank: a computer-based archival file for macromolecular structures	Q27860989
		Prediction of the Secondary Structure of Proteins from their Amino Acid Sequence	Q28131736
		Structural patterns in globular proteins	Q28252376
		Gene Product of v- fgr onc : Hybrid Protein Containing a Portion of Actin and a Tyrosine-Specific Protein Kinase	Q28265739
		The anatomy and taxonomy of protein structure	Q28277011
		Protein structure alignment	Q28279003
		Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes	Q28305615
		Solvation energy in protein folding and binding	Q28307568
		Database of homology-derived protein structures and the structural meaning of sequence alignment	Q29614393
		The relation between frequencies of amino acids and ordered trinucleotides	Q30011438
		Secondary structure-based profiles: use of structure-conserving scoring tables in searching protein sequence databases for structural similarities	Q30195749
		Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming	Q30405607
		The protein identification resource (PIR).	Q30450734
		Identifying determinants of folding and activity for a protein of unknown structure	Q33846242
		Computer simulation of protein folding	Q34099184
		How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins	Q34285809
		The cAMP-binding domains of the regulatory subunit of cAMP-dependent protein kinase and the catabolite gene activator protein are homologous	Q36326270
		Combinatorial cassette mutagenesis as a probe of the informational content of protein sequences	Q38346946
		Sequence homology between Lac and Gal repressors and three sugar-binding periplasmic proteins	Q38354840
		Packing of α-helices: Geometrical constraints and contact areas	Q43612798
		Profile analysis	Q43640346
		Predicted structures of the cGMP binding domains of the cGMP-dependent protein kinase: a key alanine/threonine difference in evolutionary divergence of cAMP and cGMP binding sites	Q43865344
		How big is the universe of exons?	Q44307823
		Predicted structures of cAMP binding domains of type I and II regulatory subunits of cAMP-dependent protein kinase	Q44319463
		Deciphering the message in protein sequences: tolerance to amino acid substitutions	Q45038796
		Additivity of mutational effects in proteins	Q46528565
		Influence of interior packing and hydrophobicity on the stability of a protein.	Q54348901
P433	issue	5016
P407	language of work or name	English	Q1860
P921	main subject	protein structure	Q735188
		protein folding	Q847556
		Escherichia coli proteins	Q66764953
P304	page(s)	164-70
P577	publication date	1991-07-12
P1433	published in	Science	Q192864
P1476	title	A method to identify protein sequences that fold into a known three-dimensional structure
		A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure
P478	volume	253

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

scientific article published on July 12, 1991

Reverse relations