| scholarly article | Q13442814 |
| P356 | DOI | 10.1006/JMBI.1996.0737 |
| P8608 | Fatcat ID | release_w27cdxyzozewvgjwrh5cp4xmvm |
| P3181 | OpenCitations bibliographic resource ID | 1684181 |
| P698 | PubMed publication ID | 9047361 |
| P2093 | author name string | J Ofengand | |
| A Bakin | |||
| P433 | issue | 2 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | prokaryotes | Q19081 |
| mitochondrion | Q39572 | ||
| P304 | page(s) | 246-68 | |
| P577 | publication date | 1997-02-21 | |
| P1433 | published in | Journal of Molecular Biology | Q925779 |
| P1476 | title | Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts | |
| P478 | volume | 266 |
| Q90278082 | "Lost and Found": snoRNA Annotation in the Xenopus Genome and Implications for Evolutionary Studies |
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| Q50318912 | A Genome-wide CRISPR Death Screen Identifies Genes Essential for Oxidative Phosphorylation |
| Q33915896 | A compendium of human mitochondrial gene expression machinery with links to disease. |
| Q36900542 | A dedicated computational approach for the identification of archaeal H/ACA sRNAs |
| Q24537378 | A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA modification |
| Q35037268 | A novel site of antibiotic action in the ribosome: interaction of evernimicin with the large ribosomal subunit. |
| Q38726215 | A pseudouridine synthase module is essential for mitochondrial protein synthesis and cell viability. |
| Q41983956 | A pseudouridine synthase required for the formation of two universally conserved pseudouridines in ribosomal RNA is essential for normal growth of Escherichia coli |
| Q41355883 | A snoRNA that guides the two most conserved pseudouridine modifications within rRNA confers a growth advantage in yeast. |
| Q35004875 | An overview of the introns-first theory |
| Q37021580 | An updated human snoRNAome |
| Q28115977 | Assignment of 2'-O-methyltransferases to modification sites on the mammalian mitochondrial large subunit 16 S ribosomal RNA (rRNA) |
| Q24550436 | Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea |
| Q37900206 | Biology and applications of small nucleolar RNAs. |
| Q41453121 | Box C/D sRNA stem ends act as stabilizing anchors for box C/D di-sRNPs. |
| Q35752735 | C/D box sRNA-guided 2'-O-methylation patterns of archaeal rRNA molecules |
| Q27937456 | Characterization of yeast protein Deg1 as pseudouridine synthase (Pus3) catalyzing the formation of psi 38 and psi 39 in tRNA anticodon loop. |
| Q36649634 | Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs |
| Q28710456 | Comparative genomics of eukaryotic small nucleolar RNAs reveals deep evolutionary ancestry amidst ongoing intragenomic mobility |
| Q24680567 | Computational identification of non-coding RNAs in Saccharomyces cerevisiae by comparative genomics |
| Q39600938 | Conformational changes induced in the Saccharomyces cerevisiae GTPase-associated rRNA by ribosomal stalk components and a translocation inhibitor. |
| Q34813102 | Conventional and nonconventional roles of the nucleolus |
| Q47070519 | Deletion of Drosophila Nopp140 induces subcellular ribosomopathies |
| Q42072195 | Determinants of the inherent strength of human 5' splice sites |
| Q27934253 | Different mechanisms for pseudouridine formation in yeast 5S and 5.8S rRNAs |
| Q35775765 | Discovery of Pyrobaculum small RNA families with atypical pseudouridine guide RNA features |
| Q34366569 | Effects of nucleotide substitution and modification on the stability and structure of helix 69 from 28S rRNA |
| Q33890338 | Elements essential for accumulation and function of small nucleolar RNAs directing site-specific pseudouridylation of ribosomal RNAs |
| Q36003437 | Enhanced snoMEN Vectors Facilitate Establishment of GFP-HIF-1α Protein Replacement Human Cell Lines |
| Q50264968 | Eukaryotic rRNA methylation: the calm before the Sno storm |
| Q28243033 | Eukaryotic ribosomal RNA: the recent excitement in the nucleotide modification problem |
| Q36874021 | Expanding the nucleotide repertoire of the ribosome with post-transcriptional modifications |
| Q56765455 | Experimental RNomics |
| Q33866206 | Functional effect of deletion and mutation of the Escherichia coli ribosomal RNA and tRNA pseudouridine synthase RluA. |
| Q36503772 | Functional importance of individual rRNA 2'-O-ribose methylations revealed by high-resolution phenotyping |
| Q28279036 | Genetic aspects of mitochondrial genome evolution |
| Q24537463 | Genome-wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs |
| Q33411083 | Genome-wide analysis of chicken snoRNAs provides unique implications for the evolution of vertebrate snoRNAs |
| Q90681486 | Graphical Workflow System for Modification Calling by Machine Learning of Reverse Transcription Signatures |
| Q90706174 | Guide snoRNAs: Drivers or Passengers in Human Disease? |
| Q24539235 | Human U19 intron-encoded snoRNA is processed from a long primary transcript that possesses little potential for protein coding |
| Q28267118 | Human box H/ACA pseudouridylation guide RNA machinery |
| Q79102038 | Hyper-expression of Small Nucleolar RNAs (snoRNAs) in Female Inflorescences of Hazelnut (Corylus avellana L.) Supports rRNA Aggregation In vitro |
| Q27681233 | Identification and Characterization of the Thermus thermophilus 5-Methylcytidine (m5C) Methyltransferase Modifying 23 S Ribosomal RNA (rRNA) Base C1942 |
| Q27932601 | Identification and characterization of the tRNA:Psi 31-synthase (Pus6p) of Saccharomyces cerevisiae. |
| Q28235491 | Identification and functional analysis of 20 Box H/ACA small nucleolar RNAs (snoRNAs) from Schizosaccharomyces pombe |
| Q28364834 | Identification and site of action of the remaining four putative pseudouridine synthases in Escherichia coli |
| Q27931987 | Identification of the Saccharomyces cerevisiae RNA:pseudouridine synthase responsible for formation of psi(2819) in 21S mitochondrial ribosomal RNA. |
| Q28210497 | Identification of the first trypanosome H/ACA RNA that guides pseudouridine formation on rRNA |
| Q30989398 | Identification of the mass-silent post-transcriptionally modified nucleoside pseudouridine in RNA by matrix-assisted laser desorption/ionization mass spectrometry |
| Q40293449 | Identification of the methyltransferase targeting C2499 in Deinococcus radiodurans 23S ribosomal RNA. |
| Q36900532 | Identifying effects of snoRNA-guided modifications on the synthesis and function of the yeast ribosome |
| Q52579182 | Identities and phylogenetic comparisons of posttranscriptional modifications in 16 S ribosomal RNA from Haloferax volcanii. |
| Q34484867 | Inactivation of the RluD pseudouridine synthase has minimal effects on growth and ribosome function in wild-type Escherichia coli and Salmonella enterica |
| Q30363162 | Insights into the biology of Escherichia coli through structural proteomics. |
| Q40211080 | Isolation of SOS constitutive mutants of Escherichia coli |
| Q58540266 | Landscape of the complete RNA chemical modifications in the human 80S ribosome |
| Q46978047 | Matching of Soulmates: coevolution of snoRNAs and their targets |
| Q36189272 | Mitochondrial ribosome assembly in health and disease |
| Q35825874 | Mitochondrial transcript maturation and its disorders |
| Q74477629 | Modification of rRNA as a 'quality control mechanism' in ribosome biogenesis |
| Q54599572 | Modifications in Thermus thermophilus 23 S ribosomal RNA are centered in regions of RNA-RNA contact. |
| Q40098077 | Modulation of conformational changes in helix 69 mutants by pseudouridine modifications. |
| Q28507063 | Mouse dyskerin mutations affect accumulation of telomerase RNA and small nucleolar RNA, telomerase activity, and ribosomal RNA processing |
| Q33737132 | Mutational analysis of 23S ribosomal RNA structure and function in Escherichia coli. |
| Q41899715 | New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. |
| Q38803117 | Next-generation sequencing technologies for detection of modified nucleotides in RNAs. |
| Q22122367 | Non–coding RNA genes and the modern RNA world |
| Q28300721 | Novel small Cajal-body-specific RNAs identified in Drosophila: probing guide RNA function |
| Q41858766 | Number, position, and significance of the pseudouridines in the large subunit ribosomal RNA of Haloarcula marismortui and Deinococcus radiodurans |
| Q24546450 | Polyadenylation of ribosomal RNA in human cells |
| Q33731377 | Posttranscriptional modifications in 16S and 23S rRNAs of the archaeal hyperthermophile Sulfolobus solfataricus |
| Q30827747 | Posttranscriptional modifications in the A-loop of 23S rRNAs from selected archaea and eubacteria |
| Q54457865 | Probing RNA hairpins with cobalt(III)hexammine and electrospray ionization mass spectrometry. |
| Q38780402 | Properties and reactivity of nucleic acids relevant to epigenomics, transcriptomics, and therapeutics |
| Q35111860 | Pseudouridine formation in archaeal RNAs: The case of Haloferax volcanii |
| Q27937578 | Pseudouridine mapping in the Saccharomyces cerevisiae spliceosomal U small nuclear RNAs (snRNAs) reveals that pseudouridine synthase pus1p exhibits a dual substrate specificity for U2 snRNA and tRNA. |
| Q49588262 | Pseudouridine-Free Escherichia coli Ribosomes |
| Q24540282 | Pseudouridine-guide RNAs and other Cbf5p-associated RNAs in Euglena gracilis |
| Q35133639 | Pseudouridines and pseudouridine synthases of the ribosome. |
| Q38770274 | Pseudouridylation meets next-generation sequencing |
| Q41673642 | Quantification of Pseudouridine Levels in Cellular RNA Pools with a Modified HPLC-UV Assay. |
| Q28268557 | RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data |
| Q43218260 | RNAsnoop: efficient target prediction for H/ACA snoRNAs |
| Q24676223 | RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs |
| Q28198621 | RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse |
| Q41865855 | Random pseuoduridylation in vivo reveals critical region of Escherichia coli 23S rRNA for ribosome assembly |
| Q39174983 | Regulation of Mammalian Mitochondrial Gene Expression: Recent Advances |
| Q38097516 | Regulation of snoRNAs in cancer: close encounters with interferon |
| Q38095914 | Ribonucleoproteins in archaeal pre-rRNA processing and modification. |
| Q34571025 | Ribosomal RNA pseudouridines and pseudouridine synthases |
| Q40420065 | Ribosome performance is enhanced by a rich cluster of pseudouridines in the A-site finger region of the large subunit |
| Q41348590 | SNORA21 - An Oncogenic Small Nucleolar RNA, with a Prognostic Biomarker Potential in Human Colorectal Cancer. |
| Q24533023 | Sequence and structural elements of methylation guide snoRNAs essential for site-specific ribose methylation of pre-rRNA. |
| Q28240607 | Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs |
| Q74576824 | Small nucleolar RNAs and pre-rRNA processing in plants |
| Q34546169 | Small nucleolar RNAs: versatile trans-acting molecules of ancient evolutionary origin. |
| Q27640330 | Structural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression |
| Q38877369 | Structural landscape of base pairs containing post-transcriptional modifications in RNA. |
| Q27681107 | Structure modulation of helix 69 from Escherichia coli 23S ribosomal RNA by pseudouridylations |
| Q47823744 | Structures of the human mitochondrial ribosome in native states of assembly. |
| Q43821553 | Synthesis of a 3-methyluridine phosphoramidite to investigate the role of methylation in a ribosomal RNA hairpin |
| Q43032876 | The 3D rRNA modification maps database: with interactive tools for ribosome analysis |
| Q37735150 | The Pseudouridine Synthase RPUSD4 Is an Essential Component of Mitochondrial RNA Granules |
| Q38554658 | The RNA modification database--1998. |
| Q21263003 | The coding/non-coding overlapping architecture of the gene encoding the Drosophila pseudouridine synthase |
| Q41355893 | The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae |
| Q37631867 | The contribution of pseudouridine to stabilities and structure of RNAs |
| Q28216313 | The expanding snoRNA world |
| Q33212636 | The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus |
| Q73224001 | The first determination of pseudouridine residues in 23S ribosomal RNA from hyperthermophilic Archaea Sulfolobus acidocaldarius |
| Q64074474 | The mammalian mitochondrial epitranscriptome |
| Q48018317 | The mitochondrial epitranscriptome: the roles of RNA modifications in mitochondrial translation and human disease. |
| Q38895517 | The process of mammalian mitochondrial protein synthesis. |
| Q42680708 | The rluC gene of Escherichia coli codes for a pseudouridine synthase that is solely responsible for synthesis of pseudouridine at positions 955, 2504, and 2580 in 23 S ribosomal RNA. |
| Q27939838 | The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of psi55 in both mitochondrial and cytoplasmic tRNAs |
| Q38569103 | Transcriptome-wide dynamics of RNA pseudouridylation |
| Q35374452 | Transcriptome-wide mapping of pseudouridines: pseudouridine synthases modify specific mRNAs in S. cerevisiae |
| Q38716230 | Transcriptomic Analysis of THP-1 Macrophages Exposed to Lipoprotein Hydrolysis Products Generated by Lipoprotein Lipase. |
| Q63979917 | Uncovering the assembly pathway of human ribosomes and its emerging links to disease |
| Q33689050 | Unique structural and stabilizing roles for the individual pseudouridine residues in the 1920 region of Escherichia coli 23S rRNA |
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| Q28610126 | rRNA modifications and ribosome function |
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