| scholarly article | Q13442814 |
| P356 | DOI | 10.1093/EMBOJ/20.6.1415 |
| P8608 | Fatcat ID | release_i5yuqoihjnhejenjqcwayulnfm |
| P932 | PMC publication ID | 145516 |
| P698 | PubMed publication ID | 11250907 |
| P5875 | ResearchGate publication ID | 12081388 |
| P2093 | author name string | D M Lilley | |
| D A Lafontaine | |||
| D G Norman | |||
| P2860 | cites work | Ionic interactions and the global conformations of the hammerhead ribozyme | Q72162662 |
| Location of cyanine-3 on double-stranded DNA: importance for fluorescence resonance energy transfer studies | Q73829076 | ||
| Rearrangement of a stable RNA secondary structure during VS ribozyme catalysis | Q73958586 | ||
| Smaller, faster ribozymes reveal the catalytic core of Neurospora VS RNA | Q74352624 | ||
| Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops | Q74771998 | ||
| A long-range pseudoknot is required for activity of the Neurospora VS ribozyme | Q24562962 | ||
| Efficient trans-cleavage of a stem-loop RNA substrate by a ribozyme derived from neurospora VS RNA | Q24568364 | ||
| Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates | Q24632342 | ||
| The complete atomic structure of the large ribosomal subunit at 2.4 A resolution | Q27626400 | ||
| The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage | Q27729430 | ||
| Capturing the structure of a catalytic RNA intermediate: the hammerhead ribozyme | Q27734150 | ||
| Crystal structure of a hepatitis delta virus ribozyme | Q27765718 | ||
| A site-specific self-cleavage reaction performed by a novel RNA in Neurospora mitochondria | Q28238469 | ||
| Identification of phosphate groups involved in metal binding and tertiary interactions in the core of the Neurospora VS ribozyme | Q28282929 | ||
| The VS catalytic RNA replicates by reverse transcription as a satellite of a retroplasmid | Q28287464 | ||
| The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone | Q28288958 | ||
| Tertiary structure formation in the hairpin ribozyme monitored by fluorescence resonance energy transfer | Q28769589 | ||
| RNA-mediated ligation of self-cleavage products of a Neurospora mitochondrial plasmid transcript | Q28775802 | ||
| Analysis of global conformation of branched RNA species using electrophoresis and fluorescence | Q33928747 | ||
| A secondary-structure model for the self-cleaving region of Neurospora VS RNA. | Q34359189 | ||
| Fluorescence resonance energy transfer and nucleic acids | Q35401949 | ||
| Observing the helical geometry of double-stranded DNA in solution by fluorescence resonance energy transfer | Q36212246 | ||
| Binding of U1A protein to the 3' untranslated region of its pre-mRNA. | Q38324764 | ||
| Ion-induced folding of the hammerhead ribozyme: a fluorescence resonance energy transfer study | Q38339918 | ||
| Structures of bulged three-way DNA junctions | Q40415663 | ||
| The ion-induced folding of the hammerhead ribozyme: core sequence changes that perturb folding into the active conformation. | Q43205930 | ||
| Hammerhead ribozyme kinetics | Q43206267 | ||
| Nucleotide sequence requirements for self-cleavage of Neurospora VS RNA. | Q44739659 | ||
| Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction | Q45858676 | ||
| RNA folding and misfolding of the hammerhead ribozyme. | Q53935843 | ||
| Identification of functional domains in the self-cleaving Neurospora VS ribozyme using damage selection. | Q53970675 | ||
| Fluorescence energy transfer shows that the four-way DNA junction is a right-handed cross of antiparallel molecules | Q59066371 | ||
| Fluorescence resonance energy transfer analysis of the structure of the four-way DNA junction | Q68133215 | ||
| The global folding of four-way helical junctions in RNA, including that in U1 snRNA | Q70787168 | ||
| P433 | issue | 6 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | ribozyme | Q205858 |
| P304 | page(s) | 1415-24 | |
| P577 | publication date | 2001-03-15 | |
| P1433 | published in | The EMBO Journal | Q1278554 |
| P1476 | title | Structure, folding and activity of the VS ribozyme: importance of the 2-3-6 helical junction | |
| P478 | volume | 20 |
| Q34091156 | 4-thio-U cross-linking identifies the active site of the VS ribozyme |
| Q36850014 | A chemo-genetic approach for the study of nucleobase participation in nucleolytic ribozymes |
| Q42791065 | A guanine nucleobase important for catalysis by the VS ribozyme |
| Q35902022 | A loop loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control |
| Q41975860 | A remarkably stable kissing-loop interaction defines substrate recognition by the Neurospora Varkud Satellite ribozyme. |
| Q41995782 | An important role of G638 in the cis-cleavage reaction of the Neurospora VS ribozyme revealed by a novel nucleotide analog incorporation method |
| Q37255376 | Analysis of branched nucleic acid structure using comparative gel electrophoresis |
| Q41184400 | Assembly and dynamics of the U4/U6 di-snRNP by single-molecule FRET. |
| Q35899062 | CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical Stacking |
| Q37856422 | Catalysis by the nucleolytic ribozymes |
| Q85194974 | Comparative gel electrophoresis analysis of helical junctions in RNA |
| Q35144890 | Constitutive regulatory activity of an evolutionarily excluded riboswitch variant. |
| Q27639264 | Crystal structure of SRP19 in complex with the S domain of SRP RNA and its implication for the assembly of the signal recognition particle |
| Q34496044 | Crystal structure of the Varkud satellite ribozyme |
| Q33776595 | Do the hairpin and VS ribozymes share a common catalytic mechanism based on general acid-base catalysis? A critical assessment of available experimental data |
| Q78590922 | Folding and catalysis by the VS ribozyme |
| Q42257025 | Formation of an active site in trans by interaction of two complete Varkud Satellite ribozymes |
| Q44170441 | Functional group requirements in the probable active site of the VS ribozyme |
| Q42587661 | Helix-length compensation studies reveal the adaptability of the VS ribozyme architecture |
| Q34527871 | INFO-RNA--a fast approach to inverse RNA folding. |
| Q74408034 | Identification of the catalytic subdomain of the VS ribozyme and evidence for remarkable sequence tolerance in the active site loop |
| Q38734268 | Insights into RNA structure and dynamics from recent NMR and X-ray studies of the Neurospora Varkud satellite ribozyme. |
| Q42871879 | Mechanisms of RNA catalysis |
| Q35851631 | Metal-ion-dependent folding of a uranyl-specific DNAzyme: insight into function from fluorescence resonance energy transfer studies |
| Q27681056 | NMR Localization of Divalent Cations at the Active Site of the Neurospora VS Ribozyme Provides Insights into RNA–Metal-Ion Interactions |
| Q27666728 | NMR structure of the A730 loop of the Neurospora VS ribozyme: insights into the formation of the active site |
| Q35672171 | Predicting coaxial helical stacking in RNA junctions |
| Q44469078 | Probing RNA structural dynamics and function by fluorescence resonance energy transfer (FRET). |
| Q33364669 | RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme |
| Q34340322 | RNAiFOLD: a constraint programming algorithm for RNA inverse folding and molecular design. |
| Q39645881 | Rapid formation of a solvent-inaccessible core in the Neurospora Varkud satellite ribozyme |
| Q35180337 | Ribozyme speed limits |
| Q30484379 | Single VS ribozyme molecules reveal dynamic and hierarchical folding toward catalysis. |
| Q38644976 | Splitting a DNAzyme enables a Na+-dependent FRET signal from the embedded aptamer |
| Q48262107 | Structural Basis for Substrate Helix Remodeling and Cleavage Loop Activation in the Varkud Satellite Ribozyme. |
| Q42531422 | The NMR structure of the II-III-VI three-way junction from the Neurospora VS ribozyme reveals a critical tertiary interaction and provides new insights into the global ribozyme structure |
| Q42839458 | The Small Ribozymes: Common and Diverse Features Observed through the FRET Lens |
| Q85194976 | The Structure and Folding of Branched RNA Analyzed by Fluorescence Resonance Energy Transfer |
| Q24540253 | The Varkud satellite ribozyme |
| Q39400562 | The complete VS ribozyme in solution studied by small-angle X-ray scattering |
| Q39535265 | The contribution of 2'-hydroxyls to the cleavage activity of the Neurospora VS ribozyme |
| Q28217201 | The global structure of the VS ribozyme |
| Q44222221 | The role of magnesium ions and 2'-hydroxyl groups in the VS ribozyme-substrate interaction |
| Q40637156 | The role of phosphate groups in the VS ribozyme-substrate interaction |
| Q37417135 | The structure and function of catalytic RNAs |
| Q43207499 | Topology of three-way junctions in folded RNAs |
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