| scholarly article | Q13442814 |
| P50 | author | Pascale Legault | Q57026233 |
| P2093 | author name string | Eric Bonneau | |
| Sébastien Lemieux | |||
| Nicolas Girard | |||
| P2860 | cites work | Geometric nomenclature and classification of RNA base pairs | Q24539990 |
| The Varkud satellite ribozyme | Q24540253 | ||
| A long-range pseudoknot is required for activity of the Neurospora VS ribozyme | Q24562962 | ||
| Efficient trans-cleavage of a stem-loop RNA substrate by a ribozyme derived from neurospora VS RNA | Q24568364 | ||
| Structure of the ribozyme substrate hairpin of Neurospora VS RNA: a close look at the cleavage site | Q27629168 | ||
| A pH controlled conformational switch in the cleavage site of the VS ribozyme substrate RNA | Q27631723 | ||
| NMR structure of the active conformation of the Varkud satellite ribozyme cleavage site | Q27641378 | ||
| Structure of HCV IRES domain II determined by NMR | Q27642415 | ||
| Riboswitch structure: an internal residue mimicking the purine ligand | Q27658688 | ||
| Structure of a Conserved Retroviral RNA Packaging Element by NMR Spectroscopy and Cryo-Electron Tomography | Q27664955 | ||
| NMR structure of the A730 loop of the Neurospora VS ribozyme: insights into the formation of the active site | Q27666728 | ||
| Structure of the yeast U2/U6 snRNA complex | Q27677233 | ||
| Structural Insights Into Substrate Recognition by the Neurospora Varkud Satellite Ribozyme: Importance of U-Turns at the Kissing-Loop Junction | Q27680862 | ||
| NMR Localization of Divalent Cations at the Active Site of the Neurospora VS Ribozyme Provides Insights into RNA–Metal-Ion Interactions | Q27681056 | ||
| A structure-based mechanism for tRNA and retroviral RNA remodelling during primer annealing | Q27695603 | ||
| Nuclear magnetic resonance structure of the III-IV-V three-way junction from the Varkud satellite ribozyme and identification of magnesium-binding sites using paramagnetic relaxation enhancement | Q27695627 | ||
| Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain | Q27748294 | ||
| The Xplor-NIH NMR molecular structure determination package | Q27860805 | ||
| Comparison of multiple Amber force fields and development of improved protein backbone parameters | Q27861040 | ||
| The global structure of the VS ribozyme | Q28217201 | ||
| A site-specific self-cleavage reaction performed by a novel RNA in Neurospora mitochondria | Q28238469 | ||
| NMR structure of the 101-nucleotide core encapsidation signal of the Moloney murine leukemia virus | Q28248635 | ||
| Identification of phosphate groups involved in metal binding and tertiary interactions in the core of the Neurospora VS ribozyme | Q28282929 | ||
| Catalytic strategies of self-cleaving ribozymes | Q28288343 | ||
| The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone | Q28288958 | ||
| Structure, folding and activity of the VS ribozyme: importance of the 2-3-6 helical junction | Q28360239 | ||
| RNA-mediated ligation of self-cleavage products of a Neurospora mitochondrial plasmid transcript | Q28775802 | ||
| Ionization of a Critical Adenosine Residue in theNeurosporaVarkud Satellite Ribozyme Active Site† | Q29031760 | ||
| Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers | Q29615408 | ||
| Effects of cobalt hexammine on folding and self-cleavage of the Neurospora VS ribozyme | Q74326479 | ||
| Smaller, faster ribozymes reveal the catalytic core of Neurospora VS RNA | Q74352624 | ||
| Identification of the catalytic subdomain of the VS ribozyme and evidence for remarkable sequence tolerance in the active site loop | Q74408034 | ||
| Divalent cations stabilize unstacked conformations of DNA and RNA by interacting with base pi systems | Q77710278 | ||
| NMR structure of varkud satellite ribozyme stem-loop V in the presence of magnesium ions and localization of metal-binding sites | Q80181974 | ||
| Nuclear magnetic resonance structure of the Varkud satellite ribozyme stem-loop V RNA and magnesium-ion binding from chemical-shift mapping | Q81519823 | ||
| Preparative separation of ribonucleoside monophosphates by ion-pair reverse-phase HPLC | Q87443213 | ||
| GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit | Q29615867 | ||
| Databases in protein crystallography | Q29617260 | ||
| Conformational analysis of nucleic acids revisited: Curves+ | Q29619983 | ||
| Single VS ribozyme molecules reveal dynamic and hierarchical folding toward catalysis. | Q30484379 | ||
| Do the hairpin and VS ribozymes share a common catalytic mechanism based on general acid-base catalysis? A critical assessment of available experimental data | Q33776595 | ||
| The non-Watson-Crick base pairs and their associated isostericity matrices | Q33960863 | ||
| Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme | Q33977896 | ||
| 4-thio-U cross-linking identifies the active site of the VS ribozyme | Q34091156 | ||
| Efficient, pH-dependent RNA ligation by the VS ribozyme in trans | Q34292524 | ||
| A secondary-structure model for the self-cleaving region of Neurospora VS RNA. | Q34359189 | ||
| A widespread self-cleaving ribozyme class is revealed by bioinformatics. | Q34385600 | ||
| The Neurospora Varkud satellite ribozyme | Q35003650 | ||
| WebFR3D--a server for finding, aligning and analyzing recurrent RNA 3D motifs | Q35075517 | ||
| Predicting coaxial helical stacking in RNA junctions | Q35672171 | ||
| Evidence for proton transfer in the rate-limiting step of a fast-cleaving Varkud satellite ribozyme | Q35749522 | ||
| Comprehensive survey and geometric classification of base triples in RNA structures | Q35780079 | ||
| RNA structure. Structure of the HIV-1 RNA packaging signal | Q35820838 | ||
| Predicting helical coaxial stacking in RNA multibranch loops | Q35847218 | ||
| Intramolecular secondary structure rearrangement by the kissing interaction of the Neurospora VS ribozyme | Q36520912 | ||
| Three-way RNA junctions with remote tertiary contacts: a recurrent and highly versatile fold | Q37594351 | ||
| Identification of 2'-hydroxyl groups required for interaction of a tRNA anticodon stem-loop region with the ribosome | Q38350248 | ||
| The complete VS ribozyme in solution studied by small-angle X-ray scattering | Q39400562 | ||
| The contribution of 2'-hydroxyls to the cleavage activity of the Neurospora VS ribozyme | Q39535265 | ||
| Rapid formation of a solvent-inaccessible core in the Neurospora Varkud satellite ribozyme | Q39645881 | ||
| A remarkably stable kissing-loop interaction defines substrate recognition by the Neurospora Varkud Satellite ribozyme. | Q41975860 | ||
| An important role of G638 in the cis-cleavage reaction of the Neurospora VS ribozyme revealed by a novel nucleotide analog incorporation method | Q41995782 | ||
| Single-stranded DNA within nanopores: conformational dynamics and implications for sequencing; a molecular dynamics simulation study | Q42322984 | ||
| The ionic environment determines ribozyme cleavage rate by modulation of nucleobase pK a | Q42418767 | ||
| Helix-length compensation studies reveal the adaptability of the VS ribozyme architecture | Q42587661 | ||
| A guanine nucleobase important for catalysis by the VS ribozyme | Q42791065 | ||
| Topology of three-way junctions in folded RNAs | Q43207499 | ||
| The A730 loop is an important component of the active site of the VS ribozyme | Q43749959 | ||
| Nucleobase participation in ribozyme catalysis | Q46422302 | ||
| The solution structure of the VS ribozyme active site loop reveals a dynamic "hot-spot". | Q46519970 | ||
| Three conserved guanosines approach the reaction site in native and minimal hammerhead ribozymes. | Q53619671 | ||
| Identification of functional domains in the self-cleaving Neurospora VS ribozyme using damage selection. | Q53970675 | ||
| Reaction conditions and kinetics of self-cleavage of a ribozyme derived from Neurospora VS RNA | Q72074426 | ||
| Rearrangement of a stable RNA secondary structure during VS ribozyme catalysis | Q73958586 | ||
| P433 | issue | 9 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | ribozyme | Q205858 |
| P304 | page(s) | 1621-1632 | |
| P577 | publication date | 2015-06-29 | |
| P1433 | published in | RNA | Q7277164 |
| P1476 | title | The NMR structure of the II-III-VI three-way junction from the Neurospora VS ribozyme reveals a critical tertiary interaction and provides new insights into the global ribozyme structure | |
| P478 | volume | 21 |
| Q64230156 | A multi-axial RNA joint with a large range of motion promotes sampling of an active ribozyme conformation |
| Q38811105 | Chemo-enzymatic labeling for rapid assignment of RNA molecules. |
| Q36775475 | Chemo-enzymatic synthesis of site-specific isotopically labeled nucleotides for use in NMR resonance assignment, dynamics and structural characterizations. |
| Q60192121 | Increased Flexibility between Stems of Intramolecular Three-Way Junctions by the Insertion of Bulges |
| Q38734268 | Insights into RNA structure and dynamics from recent NMR and X-ray studies of the Neurospora Varkud satellite ribozyme. |
| Q47823672 | Mapping the Universe of RNA Tetraloop Folds. |
| Q27728069 | NMR Structures and Dynamics in a Prohead RNA Loop that Binds Metal Ions |
| Q55408856 | Principles for targeting RNA with drug-like small molecules |
| Q39776551 | Rational engineering of the Neurospora VS ribozyme to allow substrate recognition via different kissing-loop interactions |
| Q50803734 | Ribozymes: How RNA catalyzes cyclization. |
| Q38381139 | Sequence-structure relations of biopolymers |
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