| scholarly article | Q13442814 |
| P2093 | author name string | David M J Lilley | |
| Timothy J Wilson | |||
| Aileen C McLeod | |||
| P2860 | cites work | Ligand requirements for glmS ribozyme self-cleavage | Q46812332 |
| Rearrangement of a stable RNA secondary structure during VS ribozyme catalysis | Q73958586 | ||
| Identification of the catalytic subdomain of the VS ribozyme and evidence for remarkable sequence tolerance in the active site loop | Q74408034 | ||
| Rearrangement of substrate secondary structure facilitates binding to the Neurospora VS ribozyme | Q78625380 | ||
| A long-range pseudoknot is required for activity of the Neurospora VS ribozyme | Q24562962 | ||
| Efficient trans-cleavage of a stem-loop RNA substrate by a ribozyme derived from neurospora VS RNA | Q24568364 | ||
| Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates | Q24632342 | ||
| Structure of the ribozyme substrate hairpin of Neurospora VS RNA: a close look at the cleavage site | Q27629168 | ||
| Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis | Q27631159 | ||
| A pH controlled conformational switch in the cleavage site of the VS ribozyme substrate RNA | Q27631723 | ||
| Transition state stabilization by a catalytic RNA | Q27639765 | ||
| NMR structure of the active conformation of the Varkud satellite ribozyme cleavage site | Q27641378 | ||
| Crystal structure of a hepatitis delta virus ribozyme | Q27765718 | ||
| The global structure of the VS ribozyme | Q28217201 | ||
| Tertiary contacts distant from the active site prime a ribozyme for catalysis | Q28253391 | ||
| Structural basis of glmS ribozyme activation by glucosamine-6-phosphate | Q28264810 | ||
| The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone | Q28288958 | ||
| Structure, folding and activity of the VS ribozyme: importance of the 2-3-6 helical junction | Q28360239 | ||
| Functional involvement of G8 in the hairpin ribozyme cleavage mechanism | Q28364046 | ||
| Ionization of a Critical Adenosine Residue in theNeurosporaVarkud Satellite Ribozyme Active Site† | Q29031760 | ||
| Deoxynucleoside phosphoramidites—A new class of key intermediates for deoxypolynucleotide synthesis | Q29036222 | ||
| 4-thio-U cross-linking identifies the active site of the VS ribozyme | Q34091156 | ||
| Efficient, pH-dependent RNA ligation by the VS ribozyme in trans | Q34292524 | ||
| A secondary-structure model for the self-cleaving region of Neurospora VS RNA. | Q34359189 | ||
| Relationship between internucleotide linkage geometry and the stability of RNA. | Q34362161 | ||
| Mechanistic considerations for general acid-base catalysis by RNA: revisiting the mechanism of the hairpin ribozyme | Q35071324 | ||
| Exceptionally fast self-cleavage by a Neurospora Varkud satellite ribozyme | Q36158971 | ||
| Intramolecular secondary structure rearrangement by the kissing interaction of the Neurospora VS ribozyme | Q36520912 | ||
| Role of an active site adenine in hairpin ribozyme catalysis | Q38326010 | ||
| Nucleobase catalysis in the hairpin ribozyme | Q42508530 | ||
| The A730 loop is an important component of the active site of the VS ribozyme | Q43749959 | ||
| Functional group requirements in the probable active site of the VS ribozyme | Q44170441 | ||
| The role of magnesium ions and 2'-hydroxyl groups in the VS ribozyme-substrate interaction | Q44222221 | ||
| General acid catalysis by the hepatitis delta virus ribozyme | Q44467023 | ||
| Imidazole rescue of a cytosine mutation in a self-cleaving ribozyme | Q44882244 | ||
| A conformational switch controls hepatitis delta virus ribozyme catalysis | Q44894635 | ||
| Role of an active site guanine in hairpin ribozyme catalysis probed by exogenous nucleobase rescue | Q44939516 | ||
| General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme | Q45744207 | ||
| Nucleobase participation in ribozyme catalysis | Q46422302 | ||
| Model for general acid-base catalysis by the hammerhead ribozyme: pH-activity relationships of G8 and G12 variants at the putative active site | Q46504044 | ||
| Adenine protonation in domain B of the hairpin ribozyme | Q46637186 | ||
| P433 | issue | 10 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | guanine | Q169313 |
| ribozyme | Q205858 | ||
| P304 | page(s) | 2489-2500 | |
| P577 | publication date | 2007-04-26 | |
| P1433 | published in | The EMBO Journal | Q1278554 |
| P1476 | title | A guanine nucleobase important for catalysis by the VS ribozyme | |
| P478 | volume | 26 |
| Q41975860 | A remarkably stable kissing-loop interaction defines substrate recognition by the Neurospora Varkud Satellite ribozyme. |
| Q42859251 | Additional roles of a peripheral loop-loop interaction in the Neurospora VS ribozyme |
| Q41995782 | An important role of G638 in the cis-cleavage reaction of the Neurospora VS ribozyme revealed by a novel nucleotide analog incorporation method |
| Q28744681 | Arginine cofactors on the polymerase ribozyme |
| Q37856422 | Catalysis by the nucleolytic ribozymes |
| Q28087730 | Chemistry and Biology of Self-Cleaving Ribozymes |
| Q93135952 | Classification of the nucleolytic ribozymes based upon catalytic mechanism |
| Q64094589 | Comparison of the Structures and Mechanisms of the Pistol and Hammerhead Ribozymes |
| Q92784376 | Confluence of theory and experiment reveals the catalytic mechanism of the Varkud satellite ribozyme |
| Q27694565 | Crystal structure and mechanistic investigation of the twister ribozyme |
| Q34022610 | Crystal structure of an RNA polymerase ribozyme in complex with an antibody fragment |
| Q34496044 | Crystal structure of the Varkud satellite ribozyme |
| Q35710979 | DNA as a Versatile Chemical Component for Catalysis, Encoding, and Stereocontrol |
| Q33776595 | Do the hairpin and VS ribozymes share a common catalytic mechanism based on general acid-base catalysis? A critical assessment of available experimental data |
| Q26797312 | Fitness Landscapes of Functional RNAs |
| Q43191229 | Fluorine substituted adenosines as probes of nucleobase protonation in functional RNAs |
| Q42257025 | Formation of an active site in trans by interaction of two complete Varkud Satellite ribozymes |
| Q41905421 | General acid-base catalysis mediated by nucleobases in the hairpin ribozyme. |
| Q42587661 | Helix-length compensation studies reveal the adaptability of the VS ribozyme architecture |
| Q38734268 | Insights into RNA structure and dynamics from recent NMR and X-ray studies of the Neurospora Varkud satellite ribozyme. |
| Q42871879 | Mechanisms of RNA catalysis |
| Q37450797 | Molecular Dynamics Study of Twister Ribozyme: Role of Mg(2+) Ions and the Hydrogen-Bonding Network in the Active Site |
| Q27681056 | NMR Localization of Divalent Cations at the Active Site of the Neurospora VS Ribozyme Provides Insights into RNA–Metal-Ion Interactions |
| Q27666728 | NMR structure of the A730 loop of the Neurospora VS ribozyme: insights into the formation of the active site |
| Q90029453 | Novel ribozymes: discovery, catalytic mechanisms, and the quest to understand biological function |
| Q38204496 | Nucleic acid catalysis: metals, nucleobases, and other cofactors |
| Q33977896 | Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme |
| Q36991634 | RNA catalysis: ribozymes, ribosomes, and riboswitches |
| Q39776551 | Rational engineering of the Neurospora VS ribozyme to allow substrate recognition via different kissing-loop interactions |
| Q43082323 | Role of SLV in SLI substrate recognition by the Neurospora VS ribozyme |
| Q30484379 | Single VS ribozyme molecules reveal dynamic and hierarchical folding toward catalysis. |
| Q48262107 | Structural Basis for Substrate Helix Remodeling and Cleavage Loop Activation in the Varkud Satellite Ribozyme. |
| Q38820529 | Structural and Biochemical Properties of Novel Self-Cleaving Ribozymes |
| Q37924791 | Synthesis, properties, and applications of oligonucleotides containing an RNA dinucleotide phosphorothiolate linkage |
| Q42531422 | The NMR structure of the II-III-VI three-way junction from the Neurospora VS ribozyme reveals a critical tertiary interaction and provides new insights into the global ribozyme structure |
| Q42839458 | The Small Ribozymes: Common and Diverse Features Observed through the FRET Lens |
| Q28741195 | The chemical versatility of RNA |
| Q39400562 | The complete VS ribozyme in solution studied by small-angle X-ray scattering |
| Q42418767 | The ionic environment determines ribozyme cleavage rate by modulation of nucleobase pK a |
| Q41938330 | The linear form of a group II intron catalyzes efficient autocatalytic reverse splicing, establishing a potential for mobility |
| Q34633103 | The role of an active site Mg(2+) in HDV ribozyme self-cleavage: insights from QM/MM calculations. |
| Q38926821 | The structure of a nucleolytic ribozyme that employs a catalytic metal ion. |
| Q42353427 | The tolerance to exchanges of the Watson Crick base pair in the hammerhead ribozyme core is determined by surrounding elements |
| Q37946428 | Two distinct catalytic strategies in the hepatitis δ virus ribozyme cleavage reaction |
| Q42869072 | glmS Riboswitch binding to the glucosamine-6-phosphate α-anomer shifts the pKa toward neutrality |
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