| scholarly article | Q13442814 |
| P50 | author | Abir Ganguly | Q84791332 |
| Darrin M York | Q85376011 | ||
| Joseph A Piccirilli | Q88589510 | ||
| P2093 | author name string | Nan-Sheng Li | |
| Steven A Benner | |||
| Shuichi Hoshika | |||
| Timothy J Giese | |||
| Benjamin P Weissman | |||
| Saieesh Rao | |||
| P2860 | cites work | The Varkud satellite ribozyme | Q24540253 |
| Transition state stabilization by a catalytic RNA | Q27639765 | ||
| Active-Site Monovalent Cations Revealed in a 1.55-Å-Resolution Hammerhead Ribozyme Structure | Q27678350 | ||
| NMR Localization of Divalent Cations at the Active Site of the Neurospora VS Ribozyme Provides Insights into RNA–Metal-Ion Interactions | Q27681056 | ||
| Nuclear magnetic resonance structure of the III-IV-V three-way junction from the Varkud satellite ribozyme and identification of magnesium-binding sites using paramagnetic relaxation enhancement | Q27695627 | ||
| Chemistry and Biology of Self-Cleaving Ribozymes | Q28087730 | ||
| The global structure of the VS ribozyme | Q28217201 | ||
| A site-specific self-cleavage reaction performed by a novel RNA in Neurospora mitochondria | Q28238469 | ||
| Identification of phosphate groups involved in metal binding and tertiary interactions in the core of the Neurospora VS ribozyme | Q28282929 | ||
| The VS catalytic RNA replicates by reverse transcription as a satellite of a retroplasmid | Q28287464 | ||
| The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone | Q28288958 | ||
| Imidazo[1,2-a]-s-triazine nucleosides. Synthesis and antiviral activity of the N-bridgehead guanine, guanosine, and guanosine monophosphate analogs of imidazo[1,2-a]-s-triazine | Q28322196 | ||
| Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 1. Kinetic description of the reaction of an RNA substrate complementary to the active site | Q30455689 | ||
| Do the hairpin and VS ribozymes share a common catalytic mechanism based on general acid-base catalysis? A critical assessment of available experimental data | Q33776595 | ||
| Three-dimensional molecular theory of solvation coupled with molecular dynamics in Amber | Q33819349 | ||
| Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme | Q33977896 | ||
| 4-thio-U cross-linking identifies the active site of the VS ribozyme | Q34091156 | ||
| Crystal structure of the Varkud satellite ribozyme | Q34496044 | ||
| The Neurospora Varkud satellite ribozyme | Q35003650 | ||
| Ribozyme speed limits | Q35180337 | ||
| Small catalytic RNAs | Q35671068 | ||
| Evidence for proton transfer in the rate-limiting step of a fast-cleaving Varkud satellite ribozyme | Q35749522 | ||
| Exceptionally fast self-cleavage by a Neurospora Varkud satellite ribozyme | Q36158971 | ||
| Structural basis for a six nucleotide genetic alphabet | Q36248224 | ||
| Two Divalent Metal Ions and Conformational Changes Play Roles in the Hammerhead Ribozyme Cleavage Reaction. | Q36455539 | ||
| Transition State Features in the Hepatitis Delta Virus Ribozyme Reaction Revealed by Atomic Perturbations. | Q36592176 | ||
| Two Active Site Divalent Ions in the Crystal Structure of the Hammerhead Ribozyme Bound to a Transition State Analogue | Q36638679 | ||
| Nucleic acid catalysis: metals, nucleobases, and other cofactors | Q38204496 | ||
| Insights into RNA structure and dynamics from recent NMR and X-ray studies of the Neurospora Varkud satellite ribozyme. | Q38734268 | ||
| Divalent Metal Ion Activation of a Guanine General Base in the Hammerhead Ribozyme: Insights from Molecular Simulations | Q38771778 | ||
| The role of phosphate groups in the VS ribozyme-substrate interaction | Q40637156 | ||
| Mechanistic aspects of enzymatic catalysis: lessons from comparison of RNA and protein enzymes | Q41550164 | ||
| An important role of G638 in the cis-cleavage reaction of the Neurospora VS ribozyme revealed by a novel nucleotide analog incorporation method | Q41995782 | ||
| A guanine nucleobase important for catalysis by the VS ribozyme | Q42791065 | ||
| An MM/3D-RISM approach for ligand binding affinities. | Q43044307 | ||
| The A730 loop is an important component of the active site of the VS ribozyme | Q43749959 | ||
| Functional group requirements in the probable active site of the VS ribozyme | Q44170441 | ||
| The role of magnesium ions and 2'-hydroxyl groups in the VS ribozyme-substrate interaction | Q44222221 | ||
| Revisiting the finite temperature string method for the calculation of reaction tubes and free energies. | Q45998116 | ||
| Structural Basis for Substrate Helix Remodeling and Cleavage Loop Activation in the Varkud Satellite Ribozyme. | Q48262107 | ||
| The discovery of catalytic RNA. | Q50091530 | ||
| The GlcN6P cofactor plays multiple catalytic roles in the glmS ribozyme. | Q51139880 | ||
| Nested stochastic simulation algorithm for chemical kinetic systems with disparate rates. | Q51959045 | ||
| Hachimoji DNA and RNA: A genetic system with eight building blocks | Q61795097 | ||
| Effects of cobalt hexammine on folding and self-cleavage of the Neurospora VS ribozyme | Q74326479 | ||
| Rearrangement of substrate secondary structure facilitates binding to the Neurospora VS ribozyme | Q78625380 | ||
| NMR structure of varkud satellite ribozyme stem-loop V in the presence of magnesium ions and localization of metal-binding sites | Q80181974 | ||
| Nuclear magnetic resonance structure of the Varkud satellite ribozyme stem-loop V RNA and magnesium-ion binding from chemical-shift mapping | Q81519823 | ||
| The L-platform/L-scaffold framework: a blueprint for RNA-cleaving nucleic acid enzyme design | Q91495566 | ||
| An Ontology for Facilitating Discussion of Catalytic Strategies of RNA-Cleaving Enzymes | Q92073127 | ||
| P433 | issue | 2 | |
| P304 | page(s) | 193-201 | |
| P577 | publication date | 2020-01-20 | |
| P1433 | published in | Nature Chemistry | Q2107904 |
| P1476 | title | Confluence of theory and experiment reveals the catalytic mechanism of the Varkud satellite ribozyme | |
| P478 | volume | 12 |
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