A cellular chemical probe targeting the chromodomains of Polycomb repressive complex 1

scientific article

A cellular chemical probe targeting the chromodomains of Polycomb repressive complex 1 is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1038/NCHEMBIO.2007
P932PMC publication ID4755828
P698PubMed publication ID26807715

P50authorCheryl ArrowsmithQ5092682
Wolfram TempelQ28316856
Peter J. BrownQ42713845
Yanli LiuQ55459042
Jinrong MinQ99638529
P2093author name stringBryan L Roth
Xi-Ping Huang
Masoud Vedadi
Fengling Li
Mark T Bedford
Su Qin
Stephen V Frye
Jacqueline L Norris
Samantha G Pattenden
Guillermo Senisterra
Nancy Cheng
Bradley M Dickson
Lindsey I James
Brandi M Baughman
Stephanie H Cholensky
Jacob I Stuckey
Cari Sagum
Karynne Black
Katherine G Huber
P2860cites workPolycomb group genes: keeping stem cell activity in balanceQ21563548
CBX8, a polycomb group protein, is essential for MLL-AF9-induced leukemogenesisQ24297763
Selective inhibition of BET bromodomainsQ24301009
Specificity of the chromodomain Y chromosome family of chromodomains for lysine-methylated ARK(S/T) motifsQ24308689
Interaction proteomics analysis of polycomb proteins defines distinct PRC1 complexes in mammalian cellsQ24338840
Approaching a parameter-free metadynamicsQ27444510
Recognition and Specificity Determinants of the Human Cbx ChromodomainsQ27665584
Chromodomain antagonists that target the polycomb-group methyllysine reader protein chromobox homolog 7 (CBX7)Q27689473
XDSQ27860472
Phasercrystallographic softwareQ27860930
GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular SimulationQ27860944
Polycomb CBX7 has a unifying role in cellular lifespanQ28188425
Molecular and functional mapping of EED motifs required for PRC2-dependent histone methylationQ28586539
Different EZH2-containing complexes target methylation of histone H1 or nucleosomal histone H3Q28609869
How good are my data and what is the resolution?Q29615314
Canonical sampling through velocity rescalingQ29616131
Epigenetic protein families: a new frontier for drug discoveryQ29616621
Deletional, mutational, and methylation analyses of CDKN2 (p16/MTS1) in primary and metastatic prostate cancerQ41108314
Identification of a New Pathway for Tumor Progression: MicroRNA-181b Up-Regulation and CBX7 Down-Regulation by HMGA1 ProteinQ41986525
Is JmjC oxygenase catalysis limited to demethylation?Q42681365
CBX7 controls the growth of normal and tumor-derived prostate cells by repressing the Ink4a/Arf locus.Q43948180
Polycomb Cbx family members mediate the balance between haematopoietic stem cell self-renewal and differentiation.Q44197854
Expression of chromobox homolog 7 (CBX7) is associated with poor prognosis in ovarian clear cell adenocarcinoma via TRAIL-induced apoptotic pathway regulation.Q53075808
Loss of the CBX7 protein expression correlates with a more aggressive phenotype in pancreatic cancerQ53301564
From metadynamics to dynamicsQ54323456
Changes in the distributions and dynamics of polycomb repressive complexes during embryonic stem cell differentiationQ30481667
Automated design of ligands to polypharmacological profiles.Q30539786
Screening for inhibitors of low-affinity epigenetic peptide-protein interactions: an AlphaScreen-based assay for antagonists of methyl-lysine binding proteinsQ33518291
Polycomb CBX7 directly controls trimethylation of histone H3 at lysine 9 at the p16 locusQ33742024
The central role of EED in the orchestration of polycomb group complexes.Q33815083
Probing the probes: fitness factors for small molecule toolsQ34001269
RYBP and Cbx7 define specific biological functions of polycomb complexes in mouse embryonic stem cellsQ34034935
The art of the chemical probeQ34098693
Oncogenic role of the chromobox protein CBX7 in gastric cancerQ34105084
The loss of the CBX7 gene expression represents an adverse prognostic marker for survival of colon carcinoma patients.Q34120439
(R)-PFI-2 is a potent and selective inhibitor of SETD7 methyltransferase activity in cellsQ34144669
Androgen Receptor Drives Cellular SenescenceQ34189267
CBX7 is a tumor suppressor in mice and humansQ34244202
Target validation using chemical probesQ34333826
An orally bioavailable chemical probe of the Lysine Methyltransferases EZH2 and EZH1Q34341058
Genotranscriptomic meta-analysis of the Polycomb gene CBX2 in human cancers: initial evidence of an oncogenic role.Q34354646
Monitoring drug target engagement in cells and tissues using the cellular thermal shift assay.Q34355711
Contrasting roles of histone 3 lysine 27 demethylases in acute lymphoblastic leukaemiaQ34403179
Pharmacologic inhibition of histone demethylation as a therapy for pediatric brainstem gliomaQ34641903
Regulation of Senescence in Cancer and AgingQ34665706
Loss of the CBX7 gene expression correlates with a highly malignant phenotype in thyroid cancerQ34808328
Down-regulation of DNMT3b in PC3 cells effects locus-specific DNA methylation, and represses cellular growth and migrationQ34829786
DNMT1 silencing affects locus specific DNA methylation and increases prostate cancer derived PC3 cell invasivenessQ34987750
Small-molecule modulators of methyl-lysine binding for the CBX7 chromodomainQ35108014
Identification of a fragment-like small molecule ligand for the methyl-lysine binding protein, 53BP1.Q35472154
PRESTO-Tango as an open-source resource for interrogation of the druggable human GPCRome.Q35582384
Role of the chromobox protein CBX7 in lymphomagenesis.Q35690238
Discovery of a chemical probe for the L3MBTL3 methyllysine reader domainQ36625174
Folding dynamics and mechanism of β-hairpin formationQ36890665
Folding mechanism of β-hairpin trpzip2: heterogeneity, transition state and folding pathwaysQ37542994
Mind the methyl: methyllysine binding proteins in epigenetic regulationQ38180674
Chromobox Homolog 4 Is Correlated with Prognosis and Tumor Cell Growth in Hepatocellular CarcinomaQ39110553
Linking DNA methyltransferases to epigenetic marks and nucleosome structure genome-wide in human tumor cellsQ39239895
Ring1B compacts chromatin structure and represses gene expression independent of histone ubiquitinationQ39703639
P433issue3
P304page(s)180-187
P577publication date2016-01-25
P1433published inNature Chemical BiologyQ904026
P1476titleA cellular chemical probe targeting the chromodomains of Polycomb repressive complex 1
P478volume12

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cites work (P2860)
Q93200364A Degenerate Peptide Library Approach to Reveal Sequence Determinants of Methyllysine-Driven Protein Interactions
Q90271673A General TR-FRET Assay Platform for High-Throughput Screening and Characterizing Inhibitors of Methyl-Lysine Reader Proteins
Q38726940A Versatile Method to Determine the Cellular Bioavailability of Small-Molecule Inhibitors.
Q39147132A chemical probe toolbox for dissecting the cancer epigenome
Q42380933A fast, open source implementation of adaptive biasing potentials uncovers a ligand design strategy for the chromatin regulator BRD4.
Q92023399A novel approach to modelling transcriptional heterogeneity identifies the oncogene candidate CBX2 in invasive breast carcinoma
Q91143383Accelerated Structural Prediction of Flexible Protein-Ligand Complexes: The SLICE Method
Q47153340Assay interference and off-target liabilities of reported histone acetyltransferase inhibitors
Q48215325Aza-amino acid scanning of chromobox homolog 7 (CBX7) ligands.
Q33710042Brain-derived neurotrophic factor involved epigenetic repression of UGT2B7 in colorectal carcinoma: A mechanism to alter morphine glucuronidation in tumor
Q92667844C10ORF12 modulates PRC2 histone methyltransferase activity and H3K27me3 levels
Q37517517CBX Chromodomain Inhibition Enhances Chemotherapy Response in Glioblastoma Multiforme.
Q64081924Canonical PRC1 controls sequence-independent propagation of Polycomb-mediated gene silencing
Q37149776Cbx8 Acts Non-canonically with Wdr5 to Promote Mammary Tumorigenesis
Q39423291Chemical modulators for epigenome reader domains as emerging epigenetic therapies for cancer and inflammation
Q38878310Chemical probes for methyl lysine reader domains
Q90468307Chromatin engineering offers an opportunity to advance epigenetic cancer therapy
Q36064095Chromodomain Ligand Optimization via Target-Class Directed Combinatorial Repurposing
Q47103361Conformational dynamics of the TTD-PHD histone reader module of the UHRF1 epigenetic regulator reveals multiple histone-binding states, allosteric regulation, and druggability
Q89879844Design and Construction of a Focused DNA-Encoded Library for Multivalent Chromatin Reader Proteins
Q36371775Developing Spindlin1 small-molecule inhibitors by using protein microarrays
Q48273323Discovery of Peptidomimetic Ligands of EED as Allosteric Inhibitors of PRC2.
Q38696296EZH2 is involved in silencing of WNT5A during epithelial-mesenchymal transition of colon cancer cell line.
Q92570836Epigenetic Changes as a Target in Aging Haematopoietic Stem Cells and Age-Related Malignancies
Q33764436Epigenetic regulation of epithelial-mesenchymal transition
Q37612483Genomic targeting of epigenetic probes using a chemically tailored Cas9 system
Q41965081How and when does an anticancer drug leave its binding site?
Q36135192Identification and Structure-Activity Relationship Studies of Small-Molecule Inhibitors of the Methyllysine Reader Protein Spindlin1.
Q41510757Molecular structures guide the engineering of chromatin
Q58798742Next-Generation Drugs and Probes for Chromatin Biology: From Targeted Protein Degradation to Phase Separation
Q47194910Overcoming time scale and finite size limitations to compute nucleation rates from small scale well tempered metadynamics simulations
Q92870318Protein domain microarrays as a platform to decipher signaling pathways and the histone code
Q93119673Rational Adaptation of L3MBTL1 Inhibitors to Create Small-Molecule Cbx7 Antagonists
Q89813713Robustness of In Vitro Selection Assays of DNA-Encoded Peptidomimetic Ligands to CBX7 and CBX8
Q38748150Selective targeting of epigenetic reader domains
Q89511226Small Molecules Targeting the Specific Domains of Histone-Mark Readers in Cancer Therapy
Q38826160Structural aspects of small-molecule inhibition of methyllysine reader proteins
Q38288565Structural basis of molecular recognition of helical histone H3 tail by PHD finger domains.
Q38749422Structure-Activity Relationships and Kinetic Studies of Peptidic Antagonists of CBX Chromodomains
Q36996285Structure-Guided Discovery of Selective Antagonists for the Chromodomain of Polycomb Repressive Protein CBX7.
Q55659123Structure–Activity Relationships of Cbx7 Inhibitors, Including Selectivity Studies against Other Cbx Proteins.
Q48295925Targeted tumor detection: guidelines for developing biotinylated diagnostics
Q92179985Targeting epigenetic modifications in cancer therapy: erasing the roadmap to cancer
Q90468310Targeting non-bromodomain chromatin readers
Q57826206The synthetic histone-binding regulator protein PcTF activates interferon genes in breast cancer cells

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