Spatial gradients of protein-level time delays set the pace of the traveling segmentation clock waves

scientific article

Spatial gradients of protein-level time delays set the pace of the traveling segmentation clock waves is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1242/DEV.111930
P932PMC publication ID4302894
P698PubMed publication ID25336742
P5875ResearchGate publication ID268077112

P2093author name stringAhmet Ay
Jack Holland
Adriana Sperlea
Angel Stevenson
Ertuğrul M Ozbudak
Gnanapackiam Sheela Devakanmalai
Sebastian Sangervasi
Stephan Knierer
P2860cites workSomitogenesis clock-wave initiation requires differential decay and multiple binding sites for clock proteinQ27335009
Repressor dimerization in the zebrafish somitogenesis clockQ27339483
Notch signalling synchronizes the zebrafish segmentation clock but is not needed to create somite boundariesQ28472138
Topology and dynamics of the zebrafish segmentation clock core circuitQ28481517
Groucho-associated transcriptional repressor ripply1 is required for proper transition from the presomitic mesoderm to somitesQ28591547
Single-cell-resolution imaging of the impact of Notch signaling and mitosis on segmentation clock dynamicsQ30528453
Setting the tempo in development: an investigation of the zebrafish somite clock mechanismQ33286066
Parameter estimation in biochemical pathways: a comparison of global optimization methodsQ33682039
Spatiotemporal compartmentalization of key physiological processes during muscle precursor differentiationQ33732943
Notch signalling and the synchronization of the somite segmentation clockQ33926876
Expression of the oscillating gene her1 is directly regulated by Hairy/Enhancer of Split, T-box, and Suppressor of Hairless proteins in the zebrafish segmentation clockQ34145324
Analysis of her1 and her7 mutants reveals a spatio temporal separation of the somite clock moduleQ34314148
Of switches and hourglasses: regulation of subcellular traffic in circadian clocks by phosphorylationQ34394835
Intronic delay is essential for oscillatory expression in the segmentation clockQ34602627
Control of segment number in vertebrate embryosQ34787227
The Her7 node modulates the network topology of the zebrafish segmentation clock via sequestration of the Hes6 hub.Q35741905
SRP keeps polypeptides translocation-competent by slowing translation to match limiting ER-targeting sitesQ36726739
The genetics and embryology of zebrafish metamerismQ36814549
Halting a cellular production line: responses to ribosomal pausing during translationQ36909437
The vertebrate segmentation clock: the tip of the icebergQ37215647
Transcript processing and export kinetics are rate-limiting steps in expressing vertebrate segmentation clock genes.Q37319464
Vertebrate segmentation: from cyclic gene networks to scoliosisQ37881028
Short-lived Her proteins drive robust synchronized oscillations in the zebrafish segmentation clockQ39383305
Completing the set of h/E(spl) cyclic genes in zebrafish: her12 and her15 reveal novel modes of expression and contribute to the segmentation clock.Q40245530
PER-TIM interactions in living Drosophila cells: an interval timer for the circadian clockQ40330425
Control of her1 expression during zebrafish somitogenesis by a delta-dependent oscillator and an independent wave-front activityQ40443832
Deciphering a transcriptional regulatory code: modeling short-range repression in the Drosophila embryo.Q42025274
Accelerating the tempo of the segmentation clock by reducing the number of introns in the Hes7 geneQ43669340
Anterior and posterior waves of cyclic her1 gene expression are differentially regulated in the presomitic mesoderm of zebrafishQ44538271
Intercellular coupling regulates the period of the segmentation clockQ47073862
Oscillatory expression of Hes1, p53, and NF-kappaB driven by transcriptional time delaysQ47672822
Efficient parameter estimation for spatio-temporal models of pattern formation: case study of Drosophila melanogasterQ48382530
The elongation rate of RNA polymerase II in zebrafish and its significance in the somite segmentation clock.Q50769850
Traveling wave formation in vertebrate segmentation.Q51853752
Autoinhibition with transcriptional delay: a simple mechanism for the zebrafish somitogenesis oscillator.Q52010517
Sustained oscillations and time delays in gene expression of protein Hes1Q58882338
P4510describes a project that usesImageJQ1659584
P433issue21
P407language of work or nameEnglishQ1860
P1104number of pages10
P304page(s)4158-4167
P577publication date2014-11-01
P1433published inDevelopmentQ3025404
P1476titleSpatial gradients of protein-level time delays set the pace of the traveling segmentation clock waves
P478volume141

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cites work (P2860)
Q49925187A damped oscillator imposes temporal order on posterior gap gene expression in Drosophila.
Q47159477Differential interactions between Notch and ID factors control neurogenesis by modulating Hes factor autoregulation.
Q35635073Dynamics of the slowing segmentation clock reveal alternating two-segment periodicity.
Q50043698ES cell-derived presomitic mesoderm-like tissues for analysis of synchronized oscillations in the segmentation clock
Q62936759Modeling the Notch Response
Q99730591Muscle defects due to perturbed somite segmentation contribute to late adult scoliosis
Q55255576Noise in the Vertebrate Segmentation Clock Is Boosted by Time Delays but Tamed by Notch Signaling.
Q92185693Patterning via local cell-cell interactions in developing systems
Q36716124Persistence, period and precision of autonomous cellular oscillators from the zebrafish segmentation clock
Q46713018Pnrc2 regulates 3'UTR-mediated decay of segmentation clock-associated transcripts during zebrafish segmentation
Q48501969Recent advances in understanding vertebrate segmentation
Q61812465Regulatory Network of the Scoliosis-Associated Genes Establishes Rostrocaudal Patterning of Somites in Zebrafish
Q92705187Segmentation clock dynamics is strongly synchronized in the forming somite
Q64124711Size-reduced embryos reveal a gradient scaling-based mechanism for zebrafish somite formation
Q47829020The kinetics in mathematical models on segmentation clock genes in zebrafish.

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