| scholarly article | Q13442814 |
| P356 | DOI | 10.1371/JOURNAL.PBIO.0050150 |
| P8608 | Fatcat ID | release_hhgy35z5bfgj5hr6lkzner6btu |
| P932 | PMC publication ID | 1877819 |
| P698 | PubMed publication ID | 17535112 |
| P5875 | ResearchGate publication ID | 6301136 |
| P50 | author | Gavin J. Wright | Q55838269 |
| P2093 | author name string | Julian Lewis | |
| François Giudicelli | |||
| Ertuğrul M Ozbudak | |||
| P2860 | cites work | Lymphoid/neuronal cell surface OX2 glycoprotein recognizes a novel receptor on macrophages implicated in the control of their function | Q28138316 |
| Zebrafish GADD45beta genes are involved in somite segmentation | Q28312201 | ||
| The winged helix transcription factor Foxc1a is essential for somitogenesis in zebrafish | Q28354363 | ||
| Instability of Hes7 protein is crucial for the somite segmentation clock | Q28505422 | ||
| The Mesp2 transcription factor establishes segmental borders by suppressing Notch activity | Q28505901 | ||
| Periodic repression by the bHLH factor Hes7 is an essential mechanism for the somite segmentation clock | Q28585491 | ||
| Wnt3a plays a major role in the segmentation clock controlling somitogenesis | Q28587356 | ||
| Groucho-associated transcriptional repressor ripply1 is required for proper transition from the presomitic mesoderm to somites | Q28591547 | ||
| Dynamic expression and essential functions of Hes7 in somite segmentation | Q28593057 | ||
| Mind bomb is a ubiquitin ligase that is essential for efficient activation of Notch signaling by Delta | Q28646258 | ||
| Real-time imaging of the somite segmentation clock: revelation of unstable oscillators in the individual presomitic mesoderm cells | Q30476642 | ||
| Laser-induced gene expression in specific cells of transgenic zebrafish | Q30854916 | ||
| Zebrafish hairy/enhancer of split protein links FGF signaling to cyclic gene expression in the periodic segmentation of somites. | Q33826911 | ||
| Notch signalling and the synchronization of the somite segmentation clock | Q33926876 | ||
| Mutations affecting somite formation and patterning in the zebrafish, Danio rerio. | Q34414293 | ||
| Noise-resistant and synchronized oscillation of the segmentation clock. | Q34535986 | ||
| The ubiquitin ligase Drosophila Mind bomb promotes Notch signaling by regulating the localization and activity of Serrate and Delta | Q38328025 | ||
| Two linked hairy/Enhancer of split-related zebrafish genes, her1 and her7, function together to refine alternating somite boundaries. | Q39608214 | ||
| Control of her1 expression during zebrafish somitogenesis by a delta-dependent oscillator and an independent wave-front activity | Q40443832 | ||
| Fgf/MAPK signalling is a crucial positional cue in somite boundary formation | Q40673345 | ||
| Cooperative function of deltaC and her7 in anterior segment formation | Q42055406 | ||
| her1 and the notch pathway function within the oscillator mechanism that regulates zebrafish somitogenesis | Q43903112 | ||
| Anterior and posterior waves of cyclic her1 gene expression are differentially regulated in the presomitic mesoderm of zebrafish | Q44538271 | ||
| Eph/Ephrin signaling regulates the mesenchymal-to-epithelial transition of the paraxial mesoderm during somite morphogenesis. | Q44587842 | ||
| Opposing FGF and retinoid pathways control ventral neural pattern, neuronal differentiation, and segmentation during body axis extension | Q44607276 | ||
| Distinct roles for Mind bomb, Neuralized and Epsin in mediating DSL endocytosis and signaling in Drosophila. | Q47072547 | ||
| Zebrafish Mesp family genes, mesp-a and mesp-b are segmentally expressed in the presomitic mesoderm, and Mesp-b confers the anterior identity to the developing somites. | Q47073326 | ||
| Coordination of symmetric cyclic gene expression during somitogenesis by Suppressor of Hairless involves regulation of retinoic acid catabolism | Q47073624 | ||
| Mutations affecting neurogenesis and brain morphology in the zebrafish, Danio rerio. | Q47073741 | ||
| beamter/deltaC and the role of Notch ligands in the zebrafish somite segmentation, hindbrain neurogenesis and hypochord differentiation | Q47073807 | ||
| Oscillatory expression of Hes1, p53, and NF-kappaB driven by transcriptional time delays | Q47672822 | ||
| Multiple delta genes and lateral inhibition in zebrafish primary neurogenesis. | Q48041268 | ||
| Avian hairy gene expression identifies a molecular clock linked to vertebrate segmentation and somitogenesis | Q48041941 | ||
| A Xenopus laevis gene encoding EF-1 alpha S, the somatic form of elongation factor 1 alpha: sequence, structure, and identification of regulatory elements required for embryonic transcription | Q48075832 | ||
| Periodic Lunatic fringe expression is controlled during segmentation by a cyclic transcriptional enhancer responsive to notch signaling. | Q48294316 | ||
| A complex oscillating network of signaling genes underlies the mouse segmentation clock. | Q51929054 | ||
| Autoinhibition with transcriptional delay: a simple mechanism for the zebrafish somitogenesis oscillator. | Q52010517 | ||
| Oscillations of the snail genes in the presomitic mesoderm coordinate segmental patterning and morphogenesis in vertebrate somitogenesis. | Q52024277 | ||
| Involvement of SIP1 in positioning of somite boundaries in the mouse embryo. | Q52040762 | ||
| Highly efficient zebrafish transgenesis mediated by the meganuclease I-SceI. | Q52062394 | ||
| Mouse Nkd1, a Wnt antagonist, exhibits oscillatory gene expression in the PSM under the control of Notch signaling. | Q52086163 | ||
| Periodic notch inhibition by lunatic fringe underlies the chick segmentation clock. | Q52110194 | ||
| Hairy/E(spl)-related (Her) genes are central components of the segmentation oscillator and display redundancy with the Delta/Notch signaling pathway in the formation of anterior segmental boundaries in the zebrafish. | Q52118960 | ||
| FGF signaling controls somite boundary position and regulates segmentation clock control of spatiotemporal Hox gene activation. | Q52130820 | ||
| Sequence and embryonic expression of deltaC in the zebrafish. | Q52172693 | ||
| her1, a zebrafish pair-rule like gene, acts downstream of notch signalling to control somite development. | Q52176596 | ||
| The lunatic fringe gene is a target of the molecular clock linked to somite segmentation in avian embryos. | Q52184463 | ||
| The Notch ligand, X-Delta-2, mediates segmentation of the paraxial mesoderm in Xenopus embryos. | Q52195971 | ||
| fgf8 mRNA decay establishes a gradient that couples axial elongation to patterning in the vertebrate embryo. | Q54731950 | ||
| Heat shock produces periodic somitic disturbances in the zebrafish embryo | Q78026235 | ||
| The vertebrate segmentation clock | Q80355784 | ||
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P4510 | describes a project that uses | ImageJ | Q1659584 |
| P433 | issue | 6 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Danio rerio | Q169444 |
| P304 | page(s) | e150 | |
| P577 | publication date | 2007-06-01 | |
| P1433 | published in | PLOS Biology | Q1771695 |
| P1476 | title | Setting the tempo in development: an investigation of the zebrafish somite clock mechanism | |
| P478 | volume | 5 |
| Q38322839 | A cis-regulatory module upstream of deltaC regulated by Ntla and Tbx16 drives expression in the tailbud, presomitic mesoderm and somites |
| Q49925187 | A damped oscillator imposes temporal order on posterior gap gene expression in Drosophila. |
| Q27332728 | A multi-cell, multi-scale model of vertebrate segmentation and somite formation |
| Q30528782 | A segmentation clock operating in blastoderm and germband stages of Tribolium development |
| Q27355549 | A spatio-temporal model of Notch signalling in the zebrafish segmentation clock: conditions for synchronised oscillatory dynamics |
| Q34510104 | ACME: automated cell morphology extractor for comprehensive reconstruction of cell membranes |
| Q28660886 | An analysis of segmentation dynamics throughout embryogenesis in the centipede Strigamia maritima |
| Q34016272 | An iterative genetic and dynamical modelling approach identifies novel features of the gene regulatory network underlying melanocyte development. |
| Q28587304 | Analysis of Ripply1/2-deficient mouse embryos reveals a mechanism underlying the rostro-caudal patterning within a somite |
| Q36360169 | Ancient role of ten-m/odz in segmentation and the transition from sequential to syncytial segmentation |
| Q47427334 | Cell state switching factors and dynamical patterning modules: complementary mediators of plasticity in development and evolution |
| Q57252517 | Collective Modes of Coupled Phase Oscillators with Delayed Coupling |
| Q38002397 | Computational approaches to developmental patterning |
| Q40961087 | Continuum theory of gene expression waves during vertebrate segmentation |
| Q34787227 | Control of segment number in vertebrate embryos |
| Q51948071 | Converting genetic network oscillations into somite spatial patterns. |
| Q30487939 | Delayed coupling theory of vertebrate segmentation |
| Q28069407 | Delta-Notch signalling in segmentation |
| Q28507332 | Delta1 expression, cell cycle exit, and commitment to a specific secretory fate coincide within a few hours in the mouse intestinal stem cell system |
| Q34055635 | Dickkopf1--a new player in modelling the Wnt pathway |
| Q39532078 | Different types of oscillations in Notch and Fgf signaling regulate the spatiotemporal periodicity of somitogenesis |
| Q50221591 | Dissipative structures and biological rhythms |
| Q89068414 | Dissipative structures in biological systems: bistability, oscillations, spatial patterns and waves |
| Q35635073 | Dynamics of the slowing segmentation clock reveal alternating two-segment periodicity. |
| Q50043698 | ES cell-derived presomitic mesoderm-like tissues for analysis of synchronized oscillations in the segmentation clock |
| Q47639960 | Excitable Dynamics and Yap-Dependent Mechanical Cues Drive the Segmentation Clock |
| Q38018288 | Experiments, measurements, and mathematical modeling to decipher time signals in development |
| Q34145324 | Expression of the oscillating gene her1 is directly regulated by Hairy/Enhancer of Split, T-box, and Suppressor of Hairless proteins in the zebrafish segmentation clock |
| Q33346156 | From signals to patterns: space, time, and mathematics in developmental biology |
| Q35879220 | Generation of dispersed presomitic mesoderm cell cultures for imaging of the zebrafish segmentation clock in single cells |
| Q34428712 | Genetic oscillations. A Doppler effect in embryonic pattern formation |
| Q98286429 | Geometric models for robust encoding of dynamical information into embryonic patterns |
| Q38961926 | Heterochrony and Morphological Variation of Epithalamic Asymmetry |
| Q58772654 | Histone Deacetylase-Mediated Müller Glia Reprogramming through Her4.1-Lin28a Axis Is Essential for Retina Regeneration in Zebrafish |
| Q38940800 | Inferring the Effects of Honokiol on the Notch Signaling Pathway in SW480 Colon Cancer Cells |
| Q42957785 | Intercellular delay regulates the collective period of repressively coupled gene regulatory oscillator networks |
| Q33671329 | Intron delays and transcriptional timing during development |
| Q34602627 | Intronic delay is essential for oscillatory expression in the segmentation clock |
| Q28510335 | Lfng regulates the synchronized oscillation of the mouse segmentation clock via trans-repression of Notch signalling |
| Q35237623 | Making sense in biology: an appreciation of Julian Lewis |
| Q33779631 | Modeling the zebrafish segmentation clock's gene regulatory network constrained by expression data suggests evolutionary transitions between oscillating and nonoscillating transcription |
| Q50779248 | Modelling Delta-Notch perturbations during zebrafish somitogenesis. |
| Q35179460 | Models in biology: 'accurate descriptions of our pathetic thinking'. |
| Q38671655 | Molecular mechanism for cyclic generation of somites: Lessons from mice and zebrafish. |
| Q37301122 | Neocortical neurogenesis: morphogenetic gradients and beyond |
| Q55255576 | Noise in the Vertebrate Segmentation Clock Is Boosted by Time Delays but Tamed by Notch Signaling. |
| Q37503775 | Notch signaling, the segmentation clock, and the patterning of vertebrate somites |
| Q28472138 | Notch signalling synchronizes the zebrafish segmentation clock but is not needed to create somite boundaries |
| Q38116917 | Oscillatory gene expression and somitogenesis. |
| Q36716124 | Persistence, period and precision of autonomous cellular oscillators from the zebrafish segmentation clock |
| Q46713018 | Pnrc2 regulates 3'UTR-mediated decay of segmentation clock-associated transcripts during zebrafish segmentation |
| Q37636813 | Progress and perspective of TBX6 gene in congenital vertebral malformations |
| Q21145747 | Pulsed feedback defers cellular differentiation |
| Q91562404 | Pumilio response and AU-rich elements drive rapid decay of Pnrc2-regulated cyclic gene transcripts |
| Q37544246 | Quantitative approaches in developmental biology. |
| Q30493790 | Random cell movement promotes synchronization of the segmentation clock |
| Q34109905 | Rbm24a and Rbm24b are required for normal somitogenesis |
| Q46989944 | Reaction-diffusion approach to prevertebrae formation: effect of a local source of morphogen |
| Q48501969 | Recent advances in understanding vertebrate segmentation |
| Q61812465 | Regulatory Network of the Scoliosis-Associated Genes Establishes Rostrocaudal Patterning of Somites in Zebrafish |
| Q34770048 | Segmental patterning of the vertebrate embryonic axis |
| Q92705187 | Segmentation clock dynamics is strongly synchronized in the forming somite |
| Q38261780 | Signalling dynamics in vertebrate segmentation |
| Q37284833 | Silver nanoparticles incite size- and dose-dependent developmental phenotypes and nanotoxicity in zebrafish embryos |
| Q42877609 | Silver nanoparticles induce developmental stage-specific embryonic phenotypes in zebrafish |
| Q30528453 | Single-cell-resolution imaging of the impact of Notch signaling and mitosis on segmentation clock dynamics |
| Q47074076 | Six1a is required for the onset of fast muscle differentiation in zebrafish |
| Q64124711 | Size-reduced embryos reveal a gradient scaling-based mechanism for zebrafish somite formation |
| Q27335009 | Somitogenesis clock-wave initiation requires differential decay and multiple binding sites for clock protein |
| Q89419539 | Spatial Fold Change of FGF Signaling Encodes Positional Information for Segmental Determination in Zebrafish |
| Q30617464 | Spatial gradients of protein-level time delays set the pace of the traveling segmentation clock waves |
| Q48501602 | Stochastic Kuramoto oscillators with discrete phase states. |
| Q27318039 | Stochastic Regulation of her1/7 Gene Expression Is the Source of Noise in the Zebrafish Somite Clock Counteracted by Notch Signalling |
| Q51793130 | Synchronized oscillation of the segmentation clock gene in vertebrate development. |
| Q38030238 | Systems biology of cellular rhythms |
| Q37781196 | The segmentation clock mechanism moves up a notch. |
| Q39203499 | The temporal basis of angiogenesis |
| Q28481517 | Topology and dynamics of the zebrafish segmentation clock core circuit |
| Q37319464 | Transcript processing and export kinetics are rate-limiting steps in expressing vertebrate segmentation clock genes. |
| Q42292384 | Transcriptional Timers Regulating Mitosis in Early Drosophila Embryos |
| Q37881028 | Vertebrate segmentation: from cyclic gene networks to scoliosis |
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