| scholarly article | Q13442814 |
| P2093 | author name string | Scott A Holley | |
| Yuan Kang | |||
| Jamie Schwendinger-Schreck | |||
| P2860 | cites work | Universally sloppy parameter sensitivities in systems biology models | Q21145658 |
| Somitogenesis clock-wave initiation requires differential decay and multiple binding sites for clock protein | Q27335009 | ||
| Repressor dimerization in the zebrafish somitogenesis clock | Q27339483 | ||
| A spatio-temporal model of Notch signalling in the zebrafish segmentation clock: conditions for synchronised oscillatory dynamics | Q27355549 | ||
| Oscillatory expression of the bHLH factor Hes1 regulated by a negative feedback loop | Q28210742 | ||
| Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development | Q28477071 | ||
| Topology and dynamics of the zebrafish segmentation clock core circuit | Q28481517 | ||
| Instability of Hes7 protein is crucial for the somite segmentation clock | Q28505422 | ||
| Periodic repression by the bHLH factor Hes7 is an essential mechanism for the somite segmentation clock | Q28585491 | ||
| Dynamic expression and essential functions of Hes7 in somite segmentation | Q28593057 | ||
| Master transcription factors and mediator establish super-enhancers at key cell identity genes | Q29618062 | ||
| Control of the segmentation process by graded MAPK/ERK activation in the chick embryo | Q30476074 | ||
| Single-cell-resolution imaging of the impact of Notch signaling and mitosis on segmentation clock dynamics | Q30528453 | ||
| fgf8 mRNA decay establishes a gradient that couples axial elongation to patterning in the vertebrate embryo. | Q54731950 | ||
| A β-catenin gradient links the clock and wavefront systems in mouse embryo segmentation | Q60492559 | ||
| A clock and wavefront model for control of the number of repeated structures during animal morphogenesis | Q60698414 | ||
| Setting the tempo in development: an investigation of the zebrafish somite clock mechanism | Q33286066 | ||
| Zebrafish whole mount high-resolution double fluorescent in situ hybridization | Q33422268 | ||
| Inferring genetic interactions via a nonlinear model and an optimization algorithm | Q33534524 | ||
| Zebrafish hairy/enhancer of split protein links FGF signaling to cyclic gene expression in the periodic segmentation of somites. | Q33826911 | ||
| Expression of the oscillating gene her1 is directly regulated by Hairy/Enhancer of Split, T-box, and Suppressor of Hairless proteins in the zebrafish segmentation clock | Q34145324 | ||
| Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor | Q34172336 | ||
| Evolutionary plasticity of segmentation clock networks. | Q34190763 | ||
| Analysis of her1 and her7 mutants reveals a spatio temporal separation of the somite clock module | Q34314148 | ||
| Computational representation of developmental genetic regulatory networks | Q34420340 | ||
| Intronic delay is essential for oscillatory expression in the segmentation clock | Q34602627 | ||
| FGF4 and FGF8 comprise the wavefront activity that controls somitogenesis. | Q34652756 | ||
| Optimization of a stochastically simulated gene network model via simulated annealing. | Q35095781 | ||
| Gene regulatory logic for reading the Sonic Hedgehog signaling gradient in the vertebrate neural tube | Q35700673 | ||
| The Her7 node modulates the network topology of the zebrafish segmentation clock via sequestration of the Hes6 hub. | Q35741905 | ||
| Transcriptional regulation by the numbers: models. | Q36083228 | ||
| Crosstalk between Fgf and Wnt signaling in the zebrafish tailbud. | Q36177067 | ||
| Long-range downstream enhancers are essential for Pax6 expression | Q36661860 | ||
| Animal transcription networks as highly connected, quantitative continua | Q37947741 | ||
| Short-lived Her proteins drive robust synchronized oscillations in the zebrafish segmentation clock | Q39383305 | ||
| Two linked hairy/Enhancer of split-related zebrafish genes, her1 and her7, function together to refine alternating somite boundaries. | Q39608214 | ||
| Protein dynamics in drug combinations: a linear superposition of individual-drug responses | Q39731018 | ||
| Completing the set of h/E(spl) cyclic genes in zebrafish: her12 and her15 reveal novel modes of expression and contribute to the segmentation clock. | Q40245530 | ||
| Control of her1 expression during zebrafish somitogenesis by a delta-dependent oscillator and an independent wave-front activity | Q40443832 | ||
| Fgf/MAPK signalling is a crucial positional cue in somite boundary formation | Q40673345 | ||
| Pairwise agonist scanning predicts cellular signaling responses to combinatorial stimuli | Q41493018 | ||
| Somitogenesis in the anole lizard and alligator reveals evolutionary convergence and divergence in the amniote segmentation clock. | Q42629116 | ||
| Requirement of multiple lysine residues for the transcriptional activity and the instability of Hes7. | Q42813176 | ||
| Accelerating the tempo of the segmentation clock by reducing the number of introns in the Hes7 gene | Q43669340 | ||
| her1 and the notch pathway function within the oscillator mechanism that regulates zebrafish somitogenesis | Q43903112 | ||
| Anterior and posterior waves of cyclic her1 gene expression are differentially regulated in the presomitic mesoderm of zebrafish | Q44538271 | ||
| her11 is involved in the somitogenesis clock in zebrafish | Q45017372 | ||
| tortuga refines Notch pathway gene expression in the zebrafish presomitic mesoderm at the post-transcriptional level | Q46093519 | ||
| Segment number and axial identity in a segmentation clock period mutant | Q47073670 | ||
| her1 and her13.2 are jointly required for somitic border specification along the entire axis of the fish embryo | Q47073860 | ||
| Oscillatory expression of Hes1, p53, and NF-kappaB driven by transcriptional time delays | Q47672822 | ||
| Avian hairy gene expression identifies a molecular clock linked to vertebrate segmentation and somitogenesis | Q48041941 | ||
| The elongation rate of RNA polymerase II in zebrafish and its significance in the somite segmentation clock. | Q50769850 | ||
| Autoinhibition with transcriptional delay: a simple mechanism for the zebrafish somitogenesis oscillator. | Q52010517 | ||
| Hairy/E(spl)-related (Her) genes are central components of the segmentation oscillator and display redundancy with the Delta/Notch signaling pathway in the formation of anterior segmental boundaries in the zebrafish. | Q52118960 | ||
| FGF signaling controls somite boundary position and regulates segmentation clock control of spatiotemporal Hox gene activation. | Q52130820 | ||
| Reliability of frequency and amplitude decoding in gene regulation. | Q53382209 | ||
| P433 | issue | 2 | |
| P407 | language of work or name | English | Q1860 |
| P1104 | number of pages | 14 | |
| P304 | page(s) | 725-738 | |
| P577 | publication date | 2014-03-24 | |
| P1433 | published in | Genetics | Q3100575 |
| P1476 | title | Modeling the zebrafish segmentation clock's gene regulatory network constrained by expression data suggests evolutionary transitions between oscillating and nonoscillating transcription | |
| P478 | volume | 197 |
| Q98286429 | Geometric models for robust encoding of dynamical information into embryonic patterns |
| Q46713018 | Pnrc2 regulates 3'UTR-mediated decay of segmentation clock-associated transcripts during zebrafish segmentation |
| Q91562404 | Pumilio response and AU-rich elements drive rapid decay of Pnrc2-regulated cyclic gene transcripts |
| Q36127626 | Sumoylation of Hes6 Regulates Protein Degradation and Hes1-Mediated Transcription |
| Q47829020 | The kinetics in mathematical models on segmentation clock genes in zebrafish. |
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