Microarray standard data set and figures of merit for comparing data processing methods and experiment designs

scientific article

Microarray standard data set and figures of merit for comparing data processing methods and experiment designs is …
instance of (P31):
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/bioinformatics/HeDSCESDKJSS03
P356DOI10.1093/BIOINFORMATICS/BTG126
P698PubMed publication ID12761058
P5875ResearchGate publication ID10748485

P50authorEric E SchadtQ88032932
P2093author name stringHongyue Dai
Daniel D Shoemaker
Guy Cavet
Stephen W Edwards
Roland B Stoughton
Yudong D He
Allan R Jones
Sven Duenwald
Sergey B Stepaniants
Robert Kleinhanz
P433issue8
P407language of work or nameEnglishQ1860
P921main subjectdata processingQ6661985
P1104number of pages10
P304page(s)956-965
P577publication date2003-05-01
P1433published inBioinformaticsQ4914910
P1476titleMicroarray standard data set and figures of merit for comparing data processing methods and experiment designs
P478volume19

Reverse relations

cites work (P2860)
Q34537633A Model Selection Approach for Expression Quantitative Trait Loci (eQTL) Mapping
Q42112727A comparison of cDNA, oligonucleotide, and Affymetrix GeneChip gene expression microarray platforms.
Q36586611A gene expression network model of type 2 diabetes links cell cycle regulation in islets with diabetes susceptibility
Q30968457A graphical approach for quality control of oligonucleotide array data
Q28476599A novel statistical algorithm for gene expression analysis helps differentiate pregnane X receptor-dependent and independent mechanisms of toxicity
Q29616385An integrative genomics approach to infer causal associations between gene expression and disease
Q33509897An oligo-based microarray offers novel transcriptomic approaches for the analysis of pathogen resistance and fruit quality traits in melon (Cucumis melo L.).
Q45228878Assessing the prospects of genome-wide association studies performed in inbred mice
Q35676599ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments
Q33771852Cis-acting expression quantitative trait loci in mice
Q33257734Cis-regulatory variations: a study of SNPs around genes showing cis-linkage in segregating mouse populations
Q24801443Comparing transformation methods for DNA microarray data
Q36662861Cross-species comparative toxicogenomics as an aid to safety assessment
Q94101421Current Awareness on Comparative and Functional Genomics
Q33488115Development of a microarray platform for FFPET profiling: application to the classification of human tumors
Q33717822Disruption of the aortic elastic lamina and medial calcification share genetic determinants in mice
Q33407039Diurnal variation of the human adipose transcriptome and the link to metabolic disease
Q28292598Dosage compensation is less effective in birds than in mammals
Q24791286Estimating mutual information using B-spline functions--an improved similarity measure for analysing gene expression data
Q34007854Expression quantitative trait loci: replication, tissue- and sex-specificity in mice
Q25257837Genetic and genomic analysis of a fat mass trait with complex inheritance reveals marked sex specificity
Q29614591Genetics of gene expression and its effect on disease
Q24812680Genomic analysis of metabolic pathway gene expression in mice
Q33968151Identification and validation of genes affecting aortic lesions in mice
Q35404430Identification of causal genes, networks, and transcriptional regulators of REM sleep and wake
Q31109293Increasing the power to detect causal associations by combining genotypic and expression data in segregating populations
Q46673326Integrating QTL and high-density SNP analyses in mice to identify Insig2 as a susceptibility gene for plasma cholesterol levels
Q33255339Integrating genetic and network analysis to characterize genes related to mouse weight
Q31008848Integrating genotypic and expression data in a segregating mouse population to identify 5-lipoxygenase as a susceptibility gene for obesity and bone traits
Q37389491Integrative genomics and drug development
Q28472693Mapping the genetic architecture of gene expression in human liver
Q21183892Multi-tissue coexpression networks reveal unexpected subnetworks associated with disease
Q36986698Optimization of experimental design parameters for high-throughput chromatin immunoprecipitation studies
Q31067183Pathway and gene-set activation measurement from mRNA expression data: the tissue distribution of human pathways
Q21184169Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset
Q33558353RNA-seq mixology: designing realistic control experiments to compare protocols and analysis methods
Q34098728Regulation of RNA splicing by the methylation-dependent transcriptional repressor methyl-CpG binding protein 2.
Q36982066Role of STAT5a in regulation of sex-specific gene expression in female but not male mouse liver revealed by microarray analysis.
Q24678378Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basis
Q33869502Systematic detection of polygenic cis-regulatory evolution
Q34018308Systematic genetic and genomic analysis of cytochrome P450 enzyme activities in human liver
Q51174629The US Food and Drug Administration perspective on cancer biomarker development.
Q28749448The quantitative genetics of phenotypic robustness
Q31111559Three methods for optimization of cross-laboratory and cross-platform microarray expression data
Q34882002Tissue-specific expression and regulation of sexually dimorphic genes in mice
Q25255266Use of a mixed tissue RNA design for performance assessments on multiple microarray formats
Q44299686Use of diagnostic accuracy as a metric for evaluating laboratory proficiency with microarray assays using mixed-tissue RNA reference samples
Q33725093Validation of candidate causal genes for obesity that affect shared metabolic pathways and networks
Q34198557cDNA targets improve whole blood gene expression profiling and enhance detection of pharmocodynamic biomarkers: a quantitative platform analysis

Search more.