PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments

scientific article

PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments is …
instance of (P31):
scholarly articleQ13442814
review articleQ7318358

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P8978DBLP publication IDjournals/bmcbi/UsadelNSGBRSKHPFS06
P6179Dimensions Publication ID1010456073
P356DOI10.1186/1471-2105-7-535
P932PMC publication ID1766370
P698PubMed publication ID17176458
P5875ResearchGate publication ID6624597

P50authorMatthew A HannahQ39050206
Nese SreenivasuluQ42094305
Henning RedestigQ43114286
Dirk SteinhauserQ43134318
Björn UsadelQ55437593
Alisdair R FernieQ62566057
Mark StittQ74944318
Yves GibonQ114294741
Axel NagelQ114418696
Oliver E BläsingQ114418702
Leonard KrallQ114418703
Fabien PoreeQ114418704
P2860cites workExtension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responsesQ36190080
The lipopolysaccharide of Sinorhizobium meliloti suppresses defense-associated gene expression in cell cultures of the host plant Medicago truncatulaQ38517037
Bioconductor: open software development for computational biology and bioinformaticsQ21194861
Gene ontology: tool for the unification of biologyQ23781406
AraCyc: a biochemical pathway database for ArabidopsisQ24675279
NCBI GEO: mining millions of expression profiles--database and toolsQ24793432
ArrayExpress--a public repository for microarray gene expression data at the EBIQ24794803
A global survey of gene regulation during cold acclimation in Arabidopsis thaliana.Q24815020
High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID).Q24815153
ErmineJ: tool for functional analysis of gene expression data setsQ24816216
Exploration, normalization, and summaries of high density oligonucleotide array probe level dataQ27861098
NASCArrays: a repository for microarray data generated by NASC's transcriptomics serviceQ28776478
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processesQ30004199
Ontological analysis of gene expression data: current tools, limitations, and open problemsQ30993399
KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway mapsQ30993886
Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: effects of genetic and environmental alterations in energy metabolism in the leafQ31038800
AMDA: an R package for the automated microarray data analysisQ31048025
JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology informationQ31048901
VANTED: a system for advanced data analysis and visualization in the context of biological networksQ33235611
Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in ArabidopsisQ46813402
Group testing for pathway analysis improves comparability of different microarray datasetsQ48435804
P275copyright licenseCreative Commons Attribution 2.0 GenericQ19125117
P6216copyright statuscopyrightedQ50423863
P921main subjectontologyQ324254
P304page(s)535
P577publication date2006-12-18
P1433published inBMC BioinformaticsQ4835939
P1476titlePageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments
P478volume7

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cites work (P2860)
Q48151637A Repressor Protein Complex Regulates Leaf Growth in Arabidopsis.
Q33392877A central role of abscisic acid in stress-regulated carbohydrate metabolism.
Q38468060A co-expression gene network associated with developmental regulation of apple fruit acidity
Q46248549A comparative analysis of nonhost resistance across the two Triticeae crop species wheat and barley.
Q28821554A complete toolset for the study of Ustilago bromivora and Brachypodium sp. as a fungal-temperate grass pathosystem
Q52727738A reversible light- and genotype-dependent acquired thermotolerance response protects the potato plant from damage due to excessive temperature.
Q56094869A seed high‐lysine trait is negatively associated with the TCA cycle and slows down Arabidopsis seed germination
Q59326311A ß-d-xylosidase and a PR-4B precursor identified as genes accounting for differences in peach cold storage tolerance
Q49093593ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development
Q37238255Abundant protein phosphorylation potentially regulates Arabidopsis anther development.
Q36059691Adaptation of the MapMan ontology to biotic stress responses: application in solanaceous species.
Q42141355Alteration in Auxin Homeostasis and Signaling by Overexpression Of PINOID Kinase Causes Leaf Growth Defects in Arabidopsis thaliana
Q38588253Alteration of Plant Primary Metabolism in Response to Insect Herbivory.
Q34496399An RNA-Seq transcriptome analysis of orthophosphate-deficient white lupin reveals novel insights into phosphorus acclimation in plants.
Q43008552An orange ripening mutant links plastid NAD(P)H dehydrogenase complex activity to central and specialized metabolism during tomato fruit maturation
Q34519077Analysis of ripening-related gene expression in papaya using an Arabidopsis-based microarray
Q38514183Annotating genes of known and unknown function by large-scale coexpression analysis
Q34582375Antagonistic, overlapping and distinct responses to biotic stress in rice (Oryza sativa) and interactions with abiotic stress
Q47429314Antisense inhibition of the 2-oxoglutarate dehydrogenase complex in tomato demonstrates its importance for plant respiration and during leaf senescence and fruit maturation
Q36963318Arabidopsis thaliana LSM proteins function in mRNA splicing and degradation.
Q33402644ArrayIDer: automated structural re-annotation pipeline for DNA microarrays
Q38508445Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm
Q43916605AtMyb41 regulates transcriptional and metabolic responses to osmotic stress in Arabidopsis
Q44141251Azolla domestication towards a biobased economy?
Q46748372Barley grain maturation and germination: metabolic pathway and regulatory network commonalities and differences highlighted by new MapMan/PageMan profiling tools
Q28131785Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
Q40493451Changes in Polysome Association of mRNA Throughout Growth and Development in Arabidopsis thaliana
Q33867144Chloroplast Redox Status Modulates Genome-Wide Plant Responses during the Non-host Interaction of Tobacco with the Hemibiotrophic Bacterium Xanthomonas campestris pv. vesicatoria.
Q34478429Co-expression analysis identifies putative targets for CBP60g and SARD1 regulation
Q43147181Combined transcript and metabolite profiling of Arabidopsis grown under widely variant growth conditions facilitates the identification of novel metabolite-mediated regulation of gene expression
Q54353382Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development.
Q36214351Combined transcriptome and metabolome analyses to understand the dynamic responses of rice plants to attack by the rice stem borer Chilo suppressalis (Lepidoptera: Crambidae)
Q33755395Common and distinct organ and stress responsive transcriptomic patterns in Oryza sativa and Arabidopsis thaliana
Q46976218Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia
Q64990616Comparative analysis of the transcriptomes of the calyx abscission zone of sweet orange insights into the huanglongbing-associated fruit abscission.
Q46721884Comparative iTRAQ proteome and transcriptome analyses of sweet orange infected by "Candidatus Liberibacter asiaticus".
Q58106975Comparative physiology and transcriptional networks underlying the heat shock response in Populus trichocarpa, Arabidopsis thaliana and Glycine max
Q38467181Comparative transcriptome analysis of developmental stages of the Limonium bicolor leaf generates insights into salt gland differentiation
Q47123931Comparative transcriptome analysis unveils the tolerance mechanisms of Citrus hystrix in response to 'Candidatus Liberibacter asiaticus' infection
Q42047798Comparison of transcriptional changes to chloroplast and mitochondrial perturbations reveals common and specific responses in Arabidopsis
Q42037431Comparisons of early transcriptome responses to low-oxygen environments in three dicotyledonous plant species
Q35717234Comprehensive meta-analysis, co-expression, and miRNA nested network analysis identifies gene candidates in citrus against Huanglongbing disease
Q33898632Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing
Q35099474Conserved transcriptional regulatory programs underlying rice and barley germination
Q83843031Coordinated gene networks regulating Arabidopsis plant metabolism in response to various stresses and nutritional cues
Q35086783DASH transcription factor impacts Medicago truncatula seed size by its action on embryo morphogenesis and auxin homeostasis
Q44388757Day length dependent restructuring of the leaf transcriptome and metabolome in potato genotypes with contrasting tuberization phenotypes.
Q52682396De novo transcriptome analysis and gene expression profiling of an oleaginous microalga Scenedesmus acutus TISTR8540 during nitrogen deprivation-induced lipid accumulation.
Q43270647Deciphering transcriptional and metabolic networks associated with lysine metabolism during Arabidopsis seed development
Q33362761Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies
Q46231488Decreased mitochondrial activities of malate dehydrogenase and fumarase in tomato lead to altered root growth and architecture via diverse mechanisms
Q39154798Decreasing electron flux through the cytochrome and/or alternative respiratory pathways triggers common and distinct cellular responses dependent on growth conditions.
Q35182201Deep evolutionary comparison of gene expression identifies parallel recruitment of trans-factors in two independent origins of C4 photosynthesis
Q33587522Delayed response to cold stress is characterized by successive metabolic shifts culminating in apple fruit peel necrosis.
Q39469811Developmental stage specificity and the role of mitochondrial metabolism in the response of Arabidopsis leaves to prolonged mild osmotic stress
Q47814055Differential impact of amino acids on OXPHOS system activity following carbohydrate starvation in Arabidopsis cell suspensions
Q46250270Differential response of gray poplar leaves and roots underpins stress adaptation during hypoxia
Q33361336Drought Induces Distinct Growth Response, Protection, and Recovery Mechanisms in the Maize Leaf Growth Zone.
Q35502740Drought tolerance conferred to sugarcane by association with Gluconacetobacter diazotrophicus: a transcriptomic view of hormone pathways.
Q41349286Dynamic Maize Responses to Aphid Feeding Are Revealed by a Time Series of Transcriptomic and Metabolomic Assays
Q42774945Dynamic and rapid changes in the transcriptome and epigenome during germination and in developing rice (Oryza sativa) coleoptiles under anoxia and re-oxygenation
Q33355736EBE, an AP2/ERF transcription factor highly expressed in proliferating cells, affects shoot architecture in Arabidopsis
Q39060966Effects of Parental Temperature and Nitrate on Seed Performance are Reflected by Partly Overlapping Genetic and Metabolic Pathways
Q38468891Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling
Q58001659Establishment of theLotus japonicusGene Expression Atlas (LjGEA) and its use to explore legume seed maturation
Q51863039Evolution of C4 photosynthesis in the genus Flaveria: how many and which genes does it take to make C4?
Q34468154Expression of geminiviral AC2 RNA silencing suppressor changes sugar and jasmonate responsive gene expression in transgenic tobacco plants
Q37258205Expression profiling of rice cultivars differing in their tolerance to long-term drought stress
Q30389727Four Arabidopsis AREB/ABF transcription factors function predominantly in gene expression downstream of SnRK2 kinases in abscisic acid signalling in response to osmotic stress
Q34567541From ozone depletion to agriculture: understanding the role of UV radiation in sustainable crop production
Q46830593Functions of chloroplastic adenylate kinases in Arabidopsis
Q41684595Gaining Insight into Exclusive and Common Transcriptomic Features Linked with Biotic Stress Responses in Malus
Q33490846Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: extending MapMan ontology for grapevine
Q60303102Gene network analysis of poplar root transcriptome in response to drought stress identifies a PtaJAZ3PtaRAP2.6-centered hierarchical network
Q35004938Gene regulatory networks elucidating huanglongbing disease mechanisms
Q54282650Genome-wide transcriptomic comparison of cotton (Gossypium herbaceum) leaf and root under drought stress.
Q46188747Genomic analysis of circadian clock-, light-, and growth-correlated genes reveals PHYTOCHROME-INTERACTING FACTOR5 as a modulator of auxin signaling in Arabidopsis
Q33908215Gitools: analysis and visualisation of genomic data using interactive heat-maps
Q42261664Global Transcriptome Analysis and Identification of Differentially Expressed Genes in Strawberry after Preharvest Application of Benzothiadiazole and Chitosan.
Q46826069Global changes in gene expression, assayed by microarray hybridization and quantitative RT-PCR, during acclimation of three Arabidopsis thaliana accessions to sub-zero temperatures after cold acclimation
Q46729748Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes
Q98196707Global transcriptome analysis of subterranean pod and seed in peanut (Arachis hypogaea L.) unravels the complexity of fruit development under dark condition
Q37090648Graft union formation in grapevine induces transcriptional changes related to cell wall modification, wounding, hormone signalling, and secondary metabolism
Q33356641Grafting with rootstocks induces extensive transcriptional re-programming in the shoot apical meristem of grapevine
Q93050229Grapevine comparative early transcriptomic profiling suggests that Flavescence dorée phytoplasma represses plant responses induced by vector feeding in susceptible varieties
Q38502304High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions
Q37207996How unique is the low oxygen response? An analysis of the anaerobic response during germination and comparison with abiotic stress in rice and Arabidopsis
Q34293972Identification and characterization of petiolule-like pulvinus mutants with abolished nyctinastic leaf movement in the model legume Medicago truncatula.
Q45560517Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa
Q50759479Identification of a dual-targeted protein belonging to the mitochondrial carrier family that is required for early leaf development in rice.
Q64058017Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data
Q54255755Identifying Host Molecular Features Strongly Linked With Responses to Huanglongbing Disease in Citrus Leaves.
Q36215959Impacts of high ATP supply from chloroplasts and mitochondria on the leaf metabolism of Arabidopsis thaliana
Q43884835In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis
Q27902279InCHlib – interactive cluster heatmap for web applications
Q42164307Increased leaf size: different means to an end.
Q45180923Inhibition of SNF1-related protein kinase1 activity and regulation of metabolic pathways by trehalose-6-phosphate.
Q59793071Inhibition of TOR Represses Nutrient Consumption, Which Improves Greening after Extended Periods of Etiolation
Q40536369Integrated Analysis of Engineered Carbon Limitation in a Quadruple CO2/HCO3- Uptake Mutant of Synechocystis sp. PCC 6803.
Q47639923Integrative comparative analyses of transcript and metabolite profiles from pepper and tomato ripening and development stages uncovers species-specific patterns of network regulatory behavior
Q37978705Integrative systems biology: an attempt to describe a simple weed
Q35075729KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
Q35737376Large-Scale Transcriptome Analysis of Two Sugarcane Genotypes Contrasting for Lignin Content
Q38358205Mapping metabolic and transcript temporal switches during germination in rice highlights specific transcription factors and the role of RNA instability in the germination process
Q42472456Mechanisms of growth and patterns of gene expression in oxygen-deprived rice coleoptiles
Q93190766Mechanisms underlying the enhanced biomass and abiotic stress tolerance phenotype of an Arabidopsis MIOX over-expresser
Q30695677Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data
Q38566803Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii
Q34990200Microarray analyses and comparisons of upper or lower flanks of rice shoot base preceding gravitropic bending
Q46687814Mild reductions in mitochondrial citrate synthase activity result in a compromised nitrate assimilation and reduced leaf pigmentation but have no effect on photosynthetic performance or growth
Q48043983Molecular interaction between PHO2 and GIGANTEA reveals a new crosstalk between flowering time and phosphate homeostasis in Oryza sativa
Q33352242Molecular profiling of stomatal meristemoids reveals new component of asymmetric cell division and commonalities among stem cell populations in Arabidopsis
Q46844323Multilevel genomic analysis of the response of transcripts, enzyme activities and metabolites in Arabidopsis rosettes to a progressive decrease of temperature in the non-freezing range
Q38075582Network analysis for gene discovery in plant-specialized metabolism
Q47935203New evidence for differential roles of l10 ribosomal proteins from Arabidopsis.
Q33804073Nitric oxide mediated transcriptional modulation enhances plant adaptive responses to arsenic stress
Q42703140ORS1, an H₂O₂-responsive NAC transcription factor, controls senescence in Arabidopsis thaliana
Q34539011Organ-specific alterations in tobacco transcriptome caused by the PVX-derived P25 silencing suppressor transgene
Q47133572Overrepresentation Analyses of Differentially Expressed Genes in the Smut Fungus Ustilago bromivora during Saprophytic and in planta Growth
Q46269588Pause-and-stop: the effects of osmotic stress on cell proliferation during early leaf development in Arabidopsis and a role for ethylene signaling in cell cycle arrest
Q36135909Phosphonate analogs of 2-oxoglutarate perturb metabolism and gene expression in illuminated Arabidopsis leaves
Q53123291Photoperiod-dependent changes in the phase of core clock transcripts and global transcriptional outputs at dawn and dusk in Arabidopsis.
Q35530345Phylogeny and evolution of plant macrophage migration inhibitory factor/D-dopachrome tautomerase-like proteins
Q36743471Physiological Investigation and Transcriptome Analysis of Polyethylene Glycol (PEG)-Induced Dehydration Stress in Cassava
Q44992807Physiological and transcriptomic characterization of submergence and reoxygenation responses in soybean seedlings
Q38970762Physiological genomics of response to soil drying in diverse Arabidopsis accessions
Q90411169Physiological, Biochemical, and Transcriptional Responses to Single and Combined Abiotic Stress in Stress-Tolerant and Stress-Sensitive Potato Genotypes
Q45332597Physiological, biochemical and molecular responses of the potato (Solanum tuberosum L.) plant to moderately elevated temperature.
Q30815419Physiological, biochemical, and genome-wide transcriptional analysis reveals that elevated CO2 mitigates the impact of combined heat wave and drought stress in Arabidopsis thaliana at multiple organizational levels
Q43048250Plant L10 ribosomal proteins have different roles during development and translation under ultraviolet-B stress
Q49571943Plant temperature acclimation and growth rely on cytosolic ribosome biogenesis factor homologs.
Q46468821Plant-Specific Preprotein and Amino Acid Transporter Proteins Are Required for tRNA Import into Mitochondria
Q28533817Plants know where it hurts: root and shoot jasmonic acid induction elicit differential responses in Brassica oleracea
Q45915554Plastid genome instability leads to reactive oxygen species production and plastid-to-nucleus retrograde signaling in Arabidopsis.
Q46475589Post-transcriptional regulation of photosynthetic genes is a key driver of C4 leaf ontogeny
Q98161889Potential mechanisms of action of celastrol against rheumatoid arthritis: Transcriptomic and proteomic analysis
Q54613836Proteins of diverse function and subcellular location are lysine acetylated in Arabidopsis.
Q84459725Proteomic analysis of a spring wheat cultivar in response to prolonged cold stress
Q40549280Proteomic and phosphoproteomic analyses reveal extensive phosphorylation of regulatory proteins in developing rice anthers
Q38586363Proteomic profiling of maize opaque endosperm mutants reveals selective accumulation of lysine-enriched proteins.
Q40119201Quantitative Proteomics-Based Reconstruction and Identification of Metabolic Pathways and Membrane Transport Proteins Related to Sugar Accumulation in Developing Fruits of Pear (Pyrus communis).
Q34370992RNA-seq transcriptome profiling reveals that Medicago truncatula nodules acclimate N₂ fixation before emerging P deficiency reaches the nodules
Q41711743Rapid transcriptional and metabolic regulation of the deacclimation process in cold acclimated Arabidopsis thaliana
Q33372950Regulon organization of Arabidopsis
Q92782873Rice pyramided line IRBB67 (Xa4/Xa7) homeostasis under combined stress of high temperature and bacterial blight
Q33554103Robin: an intuitive wizard application for R-based expression microarray quality assessment and analysis
Q33356943S-nitrosoglutathione reductases are low-copy number, cysteine-rich proteins in plants that control multiple developmental and defense responses in Arabidopsis
Q36187407SAMBA, a plant-specific anaphase-promoting complex/cyclosome regulator is involved in early development and A-type cyclin stabilization
Q34284030SLocX: Predicting Subcellular Localization of Arabidopsis Proteins Leveraging Gene Expression Data
Q48150396Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis
Q88406382Seed Dormancy Involves a Transcriptional Program That Supports Early Plastid Functionality during Imbibition
Q38949859Seed-specific expression of a feedback-insensitive form of CYSTATHIONINE-γ-SYNTHASE in Arabidopsis stimulates metabolic and transcriptomic responses associated with desiccation stress
Q36283998Short-Chain Chitin Oligomers: Promoters of Plant Growth.
Q33813817Simultaneous Downregulation of MTHFR and COMT in Switchgrass Affects Plant Performance and Induces Lesion-Mimic Cell Death
Q35046447Spatio-temporal transcript profiling of rice roots and shoots in response to phosphate starvation and recovery
Q47871475Strobilurins as growth-promoting compounds: how Stroby regulates Arabidopsis leaf growth.
Q38300525Systematic analysis of phloem-feeding insect-induced transcriptional reprogramming in Arabidopsis highlights common features and reveals distinct responses to specialist and generalist insects
Q53132928Systemic analysis of inducible target of rapamycin mutants reveal a general metabolic switch controlling growth in Arabidopsis thaliana.
Q59723703Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtii
Q44160063Systems biology of tomato fruit development: combined transcript, protein, and metabolite analysis of tomato transcription factor (nor, rin) and ethylene receptor (Nr) mutants reveals novel regulatory interactions
Q33957491TOPOISOMERASE 6B is involved in chromatin remodelling associated with control of carbon partitioning into secondary metabolites and cell walls, and epidermal morphogenesis in Arabidopsis
Q38997970Targeted enhancement of glutamate-to-γ-aminobutyrate conversion in Arabidopsis seeds affects carbon-nitrogen balance and storage reserves in a development-dependent manner.
Q36083151Temperature desynchronizes sugar and organic acid metabolism in ripening grapevine fruits and remodels their transcriptome
Q38457626Temporal kinetics of the transcriptional response to carbon depletion and sucrose readdition in Arabidopsis seedlings.
Q48374822The Interplay between Carbon Availability and Growth in Different Zones of the Growing Maize Leaf
Q36083576The Vigna unguiculata Gene Expression Atlas (VuGEA) from de novo assembly and quantification of RNA-seq data provides insights into seed maturation mechanisms
Q34806769The maize brown midrib2 (bm2) gene encodes a methylenetetrahydrofolate reductase that contributes to lignin accumulation
Q36021375The plant growth promoting substance, lumichrome, mimics starch, and ethylene-associated symbiotic responses in lotus and tomato roots
Q48334844The redox state of the apoplast influences the acclimation of photosynthesis and leaf metabolism to changing irradiance.
Q35614887The zinc-binding nuclear protein HIPP3 acts as an upstream regulator of the salicylate-dependent plant immunity pathway and of flowering time in Arabidopsis thaliana
Q51847502Tomato plants overexpressing cryptochrome 2 reveal altered expression of energy and stress-related gene products in response to diurnal cues.
Q33957849ToppCluster: a multiple gene list feature analyzer for comparative enrichment clustering and network-based dissection of biological systems
Q33575205Transcript profiling of common bean (Phaseolus vulgaris L.) using the GeneChip Soybean Genome Array: optimizing analysis by masking biased probes
Q33585862Transcript profiling of two alfalfa genotypes with contrasting cell wall composition in stems using a cross-species platform: optimizing analysis by masking biased probes
Q46920865Transcript residency on ribosomes reveals a key role for the Arabidopsis thaliana bundle sheath in sulfur and glucosinolate metabolism
Q96292793Transcriptional dynamics of Zn-accumulation in developing kernels of maize reveals important Zn-uptake mechanisms
Q46617405Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination
Q35607899Transcriptional profile of sweet orange in response to chitosan and salicylic acid
Q33931081Transcriptional regulatory programs underlying barley germination and regulatory functions of Gibberellin and abscisic acid
Q57062566Transcriptome Analysis of Intrusively Growing Flax Fibers Isolated by Laser Microdissection
Q64084391Transcriptome Profile of the Variegated c.v. Milky Stripe Fig Leaf
Q38838955Transcriptome Profiling of Huanglongbing (HLB) Tolerant and Susceptible Citrus Plants Reveals the Role of Basal Resistance in HLB Tolerance
Q89208171Transcriptome analysis for identifying possible gene regulations during maize root emergence and formation at the initial growth stage
Q64958203Transcriptome and Proteome Profiling of Different Colored Rice Reveals Physiological Dynamics Involved in the Flavonoid Pathway.
Q38484682Transcriptome dynamics during fibre development in contrasting genotypes of Gossypium hirsutum L.
Q38484061Transcriptome profiling in response to different types of ionizing radiation and identification of multiple radio marker genes in rice
Q34295443Transcriptome profiling of citrus fruit response to huanglongbing disease
Q97652853Transcriptomic and network analyses reveal distinct nitrate responses in light and dark in rice leaves (Oryza sativa Indica var. Panvel1)
Q36208960Transcriptomic and proteomic approach to identify differentially expressed genes and proteins in Arabidopsis thaliana mutants lacking chloroplastic 1 and cytosolic FBPases reveals several levels of metabolic regulation
Q47547448Transcriptomic responses to biotic stresses in Malus x domestica: a meta-analysis study
Q54492857Transient Nod factor-dependent gene expression in the nodulation-competent zone of soybean (Glycine max [L.] Merr.) roots.
Q90066116Understanding the molecular mechanisms underlying graft success in grapevine
Q33876939Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems
Q64056562Variation of gene expression in plants is influenced by gene architecture and structural properties of promoters
Q57467441Visualization of molecular processes associated with seed dormancy and germination using MapMan
Q58776819VlbZIP30 of grapevine functions in dehydration tolerance via the abscisic acid core signaling pathway
Q36129578Water limitation and rootstock genotype interact to alter grape berry metabolism through transcriptome reprogramming