DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment

scientific article published on 31 July 2009

DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1128/AEM.00121-09
P932PMC publication ID2737913
P698PubMed publication ID19648381
P5875ResearchGate publication ID26710777

P50authorJames M. TiedjeQ15995540
Joonhong ParkQ90475388
Jorge Luiz Mazza RodriguesQ52354694
Woo Jun SulQ56988554
P2093author name stringJorge L M Rodrigues
Gerben J Zylstra
John F Quensen
Tamara V Tsoi
Laurie Seliger
P2860cites work16S ribosomal DNA amplification for phylogenetic studyQ24681548
Enhanced biodegradation of polychlorinated biphenyls after site-directed mutagenesis of a biphenyl dioxygenase geneQ28378460
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Identification of a complete methane monooxygenase operon from soil by combining stable isotope probing and metagenomic analysisQ33248712
Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands.Q33352295
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Nascent DNA processing by RecJ favors lesion repair over translesion synthesis at arrested replication forks in Escherichia coliQ34694893
DNA recovery from soils of diverse composition.Q35188380
Identification and modification of biphenyl dioxygenase sequences that determine the specificity of polychlorinated biphenyl degradationQ35203805
Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102.Q35424732
Cloning of bacterial genes specifying degradation of 4-chlorobiphenyl from Pseudomonas putida OU83.Q35734116
Biphenyl dioxygenases: functional versatilities and directed evolutionQ35855080
Stable isotope probing with 15N achieved by disentangling the effects of genome G+C content and isotope enrichment on DNA densityQ35869725
Characterization of biphenyl dioxygenase of Pandoraea pnomenusa B-356 as a potent polychlorinated biphenyl-degrading enzyme.Q35949302
Aerobic degradation of polychlorinated biphenylsQ35991483
Stable isotope probing - linking microbial identity to functionQ36123641
Characterization of biphenyl catabolic genes of gram-positive polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1.Q39797754
Molecular relationship of chromosomal genes encoding biphenyl/polychlorinated biphenyl catabolism: some soil bacteria possess a highly conserved bph operonQ39950516
Cloning of a gene cluster encoding biphenyl and chlorobiphenyl degradation in Pseudomonas pseudoalcaligenesQ39965430
A new medium for the enumeration and subculture of bacteria from potable waterQ40049369
Rapid assay for screening and characterizing microorganisms for the ability to degrade polychlorinated biphenylsQ40053464
Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs).Q46878662
Sequencing of Comamonas testosteroni strain B-356-biphenyl/chlorobiphenyl dioxygenase genes: evolutionary relationships among Gram-negative bacterial biphenyl dioxygenasesQ48059186
High-resolution metagenomics targets specific functional types in complex microbial communities.Q51680917
A ColE1-compatible expression vector for the production of His-tagged fusion proteinsQ73051374
Degradation of anaerobic reductive dechlorination products of Aroclor 1242 by four aerobic bacteriaQ73932557
Identification of a response regulator gene for catabolite control from a PCB-degrading beta-proteobacteria, Acidovorax sp. KKS102Q79780180
Stable isotope probing reveals the dominant role of Burkholderia species in aerobic degradation of PCBsQ81578235
Isolation and characterization of a biphenyl-utilizing psychrotrophic bacterium, Hydrogenophaga taeniospiralis IA3-A, that cometabolize dichlorobiphenyls and polychlorinated biphenyl congeners in Aroclor 1221Q83107085
P433issue17
P407language of work or nameEnglishQ1860
P921main subjectpolychlorinated biphenylQ211171
stable isotopeQ878130
metagenomicsQ903778
P304page(s)5501-5506
P577publication date2009-07-31
P1433published inApplied and Environmental MicrobiologyQ4781593
P1476titleDNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment
P478volume75

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