Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides

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Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides is …
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scholarly articleQ13442814

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P356DOI10.1371/JOURNAL.PGEN.1000714
P932PMC publication ID2764846
P698PubMed publication ID19893622
P5875ResearchGate publication ID38071042

P50authorPaul J. McMurdieQ55121955
Jochen A MüllerQ57947501
Alla LapidusQ28037157
Susan P. HolmesQ33082910
Jonathan GökeQ39050971
P2093author name stringRyan Wagner
Alfred M Spormann
Frank E Löffler
Kirsti M Ritalahti
Eugene Goltsman
Sebastian F Behrens
P2860cites workAccelerated evolution associated with genome reduction in a free-living prokaryoteQ21999766
Complete genome sequence of the dehalorespiring bacterium Desulfitobacterium hafniense Y51 and comparison with Dehalococcoides ethenogenes 195.Q22065442
Genome Streamlining in a Cosmopolitan Oceanic BacteriumQ22065795
Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenesQ22065809
Genome sequence of the chlorinated compound–respiring bacterium Dehalococcoides species strain CBDB1Q22122113
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Codon usages in different gene classes of the Escherichia coli genome.Q51193392
Breathing with chlorinated solvents.Q51540666
Growth of Dehalococcoides strains with chlorophenols as electron acceptors.Q52926525
Evolution of the terminal regions of the Streptomyces linear chromosomeQ80222873
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Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assembliesQ24812045
The integrated microbial genomes (IMG) systemQ25257667
Basic local alignment search toolQ25938991
Improved microbial gene identification with GLIMMERQ27860463
Consed: a graphical tool for sequence finishingQ27860740
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Bacterial dehalorespiration with chlorinated benzenesQ28140395
A bacterial genome in flux: the twelve linear and nine circular extrachromosomal DNAs in an infectious isolate of the Lyme disease spirochete Borrelia burgdorferiQ28144621
Isolation of a bacterium that reductively dechlorinates tetrachloroethene to etheneQ28239702
The small genome of an abundant coastal ocean methylotrophQ28275384
Reductive dechlorination of tetrachloroethene to ethene by a two-component enzyme pathwayQ28343903
Mauve: multiple alignment of conserved genomic sequence with rearrangementsQ29547292
Circos: an information aesthetic for comparative genomicsQ29547653
CRITICA: coding region identification tool invoking comparative analysisQ29614364
MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequencesQ29617490
Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNAQ29617951
Viewing and annotating sequence data with ArtemisQ30809868
Identification of a chlorobenzene reductive dehalogenase in Dehalococcoides sp. strain CBDB1.Q33302487
Genomic plasticity in prokaryotes: the case of the square haloarchaeonQ33307504
Monitoring abundance and expression of "Dehalococcoides" species chloroethene-reductive dehalogenases in a tetrachloroethene-dechlorinating flow columnQ33357278
Isolation and characterization of "Dehalococcoides" sp. strain MB, which dechlorinates tetrachloroethene to trans-1,2-dichloroetheneQ33487081
Indications for acquisition of reductive dehalogenase genes through horizontal gene transfer by Dehalococcoides ethenogenes strain 195Q33855816
Vinyl chloride: still a cause for concernQ33910749
Trichloroethene reductive dehalogenase from Dehalococcoides ethenogenes: sequence of tceA and substrate range characterizationQ33988197
Molecular analysis of Dehalococcoides 16S ribosomal DNA from chloroethene-contaminated sites throughout North America and EuropeQ34099848
Anaerobic microbial dehalogenationQ34359365
Genomic islands and the ecology and evolution of Prochlorococcus.Q34504656
Integration sites for genetic elements in prokaryotic tRNA and tmRNA genes: sublocation preference of integrase subfamiliesQ34528191
Variations on the tmRNA gene.Q34993003
Discrimination of multiple Dehalococcoides strains in a trichloroethene enrichment by quantification of their reductive dehalogenase genesQ35023609
Comparative proteomics of Dehalococcoides spp. reveals strain-specific peptides associated with activityQ35633957
Order and disorder in bacterial genomesQ35903259
Streamlining and simplification of microbial genome architectureQ36528800
Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phaseQ36672631
Comparative genomics of "Dehalococcoides ethenogenes" 195 and an enrichment culture containing unsequenced "Dehalococcoides" strainsQ36710507
The organization of the bacterial genome.Q37208839
Genetic identification of a putative vinyl chloride reductase in Dehalococcoides sp. strain BAV1.Q37572481
Macrodomain organization of the Escherichia coli chromosome.Q37592872
Oriloc: prediction of replication boundaries in unannotated bacterial chromosomesQ37875703
Molecular identification of the catabolic vinyl chloride reductase from Dehalococcoides sp. strain VS and its environmental distributionQ39305144
Reductive dechlorination of chlorinated ethenes and 1, 2-dichloroethane by "Dehalococcoides ethenogenes" 195.Q39482593
Multiple reductive-dehalogenase-homologous genes are simultaneously transcribed during dechlorination by Dehalococcoides-containing culturesQ40717124
In vitro studies on reductive vinyl chloride dehalogenation by an anaerobic mixed cultureQ41890800
Detoxification of vinyl chloride to ethene coupled to growth of an anaerobic bacteriumQ42164123
Expression of reductive dehalogenase genes in Dehalococcoides ethenogenes strain 195 growing on tetrachloroethene, trichloroethene, or 2,3-dichlorophenol.Q42432595
Isolation and characterization of Tn-Dha1, a transposon containing the tetrachloroethene reductive dehalogenase of Desulfitobacterium hafniense strain TCE1.Q42644761
Unusual codon bias in vinyl chloride reductase genes of Dehalococcoides species.Q42845847
Transcription analysis of genes encoding homologues of reductive dehalogenases in "Dehalococcoides" sp. strain CBDB1 by using terminal restriction fragment length polymorphism and quantitative PCR.Q43153339
Acetate versus hydrogen as direct electron donors to stimulate the microbial reductive dechlorination process at chloroethene-contaminated sitesQ43356639
Reductive dehalogenation of chlorinated dioxins by an anaerobic bacteriumQ44286597
Vinyl chloride and cis-dichloroethene dechlorination kinetics and microorganism growth under substrate limiting conditions.Q44784663
Dehalococcoides ethenogenes strain 195 reductively dechlorinates diverse chlorinated aromatic pollutantsQ44867363
Isolation and characterization of Dehalococcoides sp. strain FL2, a trichloroethene (TCE)- and 1,2-dichloroethene-respiring anaerobe.Q46653979
Correlation of respiratory gene expression levels and pseudo-steady-state PCE respiration rates in Dehalococcoides ethenogenesQ46745994
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue11
P304page(s)e1000714
P577publication date2009-11-06
P1433published inPLOS GeneticsQ1893441
P1476titleLocalized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides
P478volume5

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cites work (P2860)
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