Horizontal transfer of dehalogenase genes involved in the catalysis of chlorinated compounds: evidence and ecological role

scientific article published on 04 October 2011

Horizontal transfer of dehalogenase genes involved in the catalysis of chlorinated compounds: evidence and ecological role is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.3109/1040841X.2011.618114
P698PubMed publication ID21967404
P5875ResearchGate publication ID51689135

P50authorJun ZhangQ51567522
P2093author name stringBin Liang
Jiandong Jiang
Shunpeng Li
Yanfu Zhao
P2860cites workGene transfer from a bacterium injected into an aquifer to an indigenous bacteriumQ48070227
Degradation of beta-hexachlorocyclohexane by haloalkane dehalogenase LinB from gamma-hexachlorocyclohexane-utilizing bacterium Sphingobium sp. MI1205.Q48079341
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Environmental distribution of the trichloroethene reductive dehalogenase gene (tceA) suggests lateral gene transfer among Dehalococcoides.Q51082949
Horizontal gene transfer and microbial adaptation to xenobiotics: new types of mobile genetic elements and lessons from ecological studies.Q51194427
Field and soil microcosm studies on the survival and conjugation of a Pseudomonas putida strain bearing a recombinant plasmid, pADPTel.Q53883505
Transfer and expression of the herbicide-degrading plasmid pJP4 in aerobic autotrophic bacteriaQ54502872
Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B13Q56893600
Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenesQ22065809
Genome sequence of the chlorinated compound–respiring bacterium Dehalococcoides species strain CBDB1Q22122113
Lateral gene transfer and the nature of bacterial innovationQ22122396
Atrazine chlorohydrolase from Pseudomonas sp. strain ADP: gene sequence, enzyme purification, and protein characterizationQ24682752
Isolation of a bacterium that reductively dechlorinates tetrachloroethene to etheneQ28239702
Cloning and characterization of plasmid-encoded genes for the degradation of 1,2-dichloro-, 1,4-dichloro-, and 1,2,4-trichlorobenzene of Pseudomonas sp. strain P51Q28334620
Sequence analysis of the Pseudomonas sp. strain P51 tcb gene cluster, which encodes metabolism of chlorinated catechols: evidence for specialization of catechol 1,2-dioxygenases for chlorinated substratesQ28335321
Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADPQ28349622
Chlorocatechols substituted at positions 4 and 5 are substrates of the broad-spectrum chlorocatechol 1,2-dioxygenase of Pseudomonas chlororaphis RW71Q28351206
Reductive dechlorination in the energy metabolism of anaerobic bacteriaQ29306992
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A transposon encoding the complete 2,4-dichlorophenoxyacetic acid degradation pathway in the alkalitolerant strain Delftia acidovorans P4a.Q30979290
Analysis of the 2,4-dichlorophenoxyacetic acid-degradative plasmid pEST4011 of Achromobacter xylosoxidans subsp. denitrificans strain EST4002.Q47823616
Characterization of IS2112, a new insertion sequence from Rhodococcus, and its relationship with mobile elements belonging to the IS110 familyQ47969670
Genetic characterization of insertion sequence ISJP4 on plasmid pJP4 from Ralstonia eutropha JMP134.Q48041137
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Localized plasticity in the streamlined genomes of vinyl chloride respiring DehalococcoidesQ33515261
Lysobacter ruishenii sp. nov., a chlorothalonil-degrading bacterium isolated from a long-term chlorothalonil-contaminated soilQ33558315
Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13.Q33588090
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Indications for acquisition of reductive dehalogenase genes through horizontal gene transfer by Dehalococcoides ethenogenes strain 195Q33855816
A novel hydrolytic dehalogenase for the chlorinated aromatic compound chlorothalonilQ33876895
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Role of tfdC(I)D(I)E(I)F(I) and tfdD(II)C(II)E(II)F(II) gene modules in catabolism of 3-chlorobenzoate by Ralstonia eutropha JMP134(pJP4).Q33986964
Isolation and characterization of IS1409, an insertion element of 4-chlorobenzoate-degrading Arthrobacter sp. strain TM1, and development of a system for transposon mutagenesisQ33996317
Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis: evidence for horizontal gene transferQ33999467
Characterization of a class II defective transposon carrying two haloacetate dehalogenase genes from Delftia acidovorans plasmid pUO1Q34115191
Isolation and characterization of an atrazine-degrading bacterium from industrial wastewater in China.Q34188944
The clc element of Pseudomonas sp. strain B13 and other mobile degradative elements employing phage-like integrasesQ34206720
Transposition of DEH, a broad-host-range transposon flanked by ISPpu12, in Pseudomonas putida is associated with genomic rearrangements and dehalogenase gene silencing.Q34320282
Arthrobacter aurescens TC1 atrazine catabolism genes trzN, atzB, and atzC are linked on a 160-kilobase region and are functional in Escherichia coliQ34331815
The Desulfitobacterium genusQ34557621
The recent evolution of pentachlorophenol (PCP)-4-monooxygenase (PcpB) and associated pathways for bacterial degradation of PCP.Q34584068
Horizontal gene transfer and bacterial diversityQ34584184
Facilitation of bacterial adaptation to chlorothalonil-contaminated sites by horizontal transfer of the chlorothalonil hydrolytic dehalogenase geneQ35091958
Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in gamma-hexachlorocyclohexane degradation.Q35130009
The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compoundsQ35172600
A novel reductive dehalogenase, identified in a contaminated groundwater enrichment culture and in Desulfitobacterium dichloroeliminans strain DCA1, is linked to dehalogenation of 1,2-dichloroethaneQ35844313
Selection for gene clustering by tandem duplicationQ35919829
Mobile catabolic genes in bacteriaQ36289677
Diversity, distribution and divergence of lin genes in hexachlorocyclohexane-degrading sphingomonadsQ36394482
FREQUENCY OF DELETIONS AMONG SPONTANEOUS AND INDUCED MUTATIONS IN SALMONELLAQ36437650
Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1.Q36657460
Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phaseQ36672631
The genome of Polaromonas sp. strain JS666: insights into the evolution of a hydrocarbon- and xenobiotic-degrading bacterium, and features of relevance to biotechnologyQ36943483
Structure of Haloacetate-Catabolic IncP-1β Plasmid pUO1 and Genetic Mobility of Its Residing Haloacetate-Catabolic TransposonQ37052103
Genomic islands: tools of bacterial horizontal gene transfer and evolutionQ37248338
Genetic identification of a putative vinyl chloride reductase in Dehalococcoides sp. strain BAV1.Q37572481
The completely sequenced plasmid pEST4011 contains a novel IncP1 backbone and a catabolic transposon harboring tfd genes for 2,4-dichlorophenoxyacetic acid degradationQ37583361
Chlorobenzoate catabolic transposon Tn5271 is a composite class I element with flanking class II insertion sequencesQ37596438
Genes specifying degradation of 3-chlorobenzoic acid in plasmids pAC27 and pJP4.Q37680311
Agronomic and environmental implications of enhanced s-triazine degradationQ37686426
Horizontal gene and chromosome transfer in plant pathogenic fungi affecting host range.Q37827561
Molecular identification of the catabolic vinyl chloride reductase from Dehalococcoides sp. strain VS and its environmental distributionQ39305144
Characterization of an atrazine-degrading Pseudaminobacter sp. isolated from Canadian and French agricultural soilsQ39486079
Haloalkane-utilizing Rhodococcus strains isolated from geographically distinct locations possess a highly conserved gene cluster encoding haloalkane catabolismQ39539197
Roles of horizontal gene transfer and gene integration in evolution of 1,3-dichloropropene- and 1,2-dibromoethane-degradative pathwaysQ39587105
Cloning and characterization of linR, involved in regulation of the downstream pathway for gamma-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26.Q39639683
Evidence for natural horizontal transfer of the pcpB gene in the evolution of polychlorophenol-degrading sphingomonads.Q39640574
Cloning and characterization of lin genes responsible for the degradation of Hexachlorocyclohexane isomers by Sphingomonas paucimobilis strain B90.Q39676746
Molecular characterization of the PceA reductive dehalogenase of desulfitobacterium sp. strain Y51.Q39679482
Transposase-dependent formation of circular IS256 derivatives in Staphylococcus epidermidis and Staphylococcus aureusQ39680082
Unusual integrase gene expression on the clc genomic island in Pseudomonas sp. strain B13.Q39791426
The dehalogenase gene dehI from Pseudomonas putida PP3 is carried on an unusual mobile genetic element designated DEHQ39933325
Two unusual chlorocatechol catabolic gene clusters in Sphingomonas sp. TFD44.Q40448911
Evolution of chlorocatechol catabolic pathways. Conclusions to be drawn from comparisons of lactone hydrolasesQ40535918
Catabolic transposonsQ40535924
Genetics and biochemistry of dehalogenating enzymesQ40572905
The phylogenetic distribution of a transposable dioxygenase from the Niagara River watershedQ41671357
Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sourcesQ41944754
Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathwaysQ42628960
Isolation and characterization of Tn-Dha1, a transposon containing the tetrachloroethene reductive dehalogenase of Desulfitobacterium hafniense strain TCE1.Q42644761
Association of newly discovered IS elements with the dichloromethane utilization genes of methylotrophic bacteriaQ42662686
16S rDNA phylogeny and distribution of lin genes in novel hexachlorocyclohexane-degrading Sphingomonas strainsQ42665126
Genetic organization of a plasmid from an industrial wastewater bioreactorQ42671681
Unusual codon bias in vinyl chloride reductase genes of Dehalococcoides species.Q42845847
Expression of the 2,4-D degradative pathway of pJP4 in an alkaliphilic, moderately halophilic soda lake isolate, Halomonas sp. EF43.Q43029663
Hydrolytic dechlorination of chlorothalonil by Ochrobactrum sp. CTN-11 isolated from a chlorothalonil-contaminated soil.Q43165773
Genetic rearrangement of the atzAB atrazine-degrading gene cassette from pADP1::Tn5 to the chromosome of Variovorax sp. MD1 and MD2.Q43168939
Degradation of chloroaromatics by Pseudomonas putida GJ31: assembled route for chlorobenzene degradation encoded by clusters on plasmid pKW1 and the chromosomeQ43278327
Horizontal transfer of dehalogenase genes on IncP1beta plasmids during bacterial adaptation to degrade alpha-halocarboxylic acidsQ43283167
Molecular characterization of a deletion/duplication rearrangement in tfd genes from Ralstonia eutropha JMP134(pJP4) that improves growth on 3-chlorobenzoic acid but abolishes growth on 2,4-dichlorophenoxyacetic acidQ43701739
The triazine hydrolase gene trzN from Nocardioides sp. strain C190: cloning and construction of gene-specific primersQ43851113
Community shifts in a seeded 3-chlorobenzoate degrading membrane biofilm reactor: indications for involvement of in situ horizontal transfer of the clc-element from inoculum to contaminant bacteria.Q43969568
Complete characterisation of Tn5530 from Burkholderia cepacia strain 2a (pIJB1) and studies of 2,4-dichlorophenoxyacetate uptake by the organismQ44121881
Detection and organization of atrazine-degrading genetic potential of seventeen bacterial isolates belonging to divergent taxa indicate a recent common origin of their catabolic functionsQ44761023
Isolation of a Xanthobacter sp. degrading dichloromethane and characterization of the gene involved in the degradationQ46358378
Emergence of two types of nondechlorinating variants in the tetrachloroethene-halorespiring Desulfitobacterium sp. strain Y51.Q46679226
Molecular characterization of dichloromethane-degrading Hyphomicrobium strains using 16S rDNA and DCM dehalogenase gene sequencesQ46697659
Fitness drift of an atrazine-degrading population under atrazine selection pressure.Q46780640
P433issue2
P407language of work or nameEnglishQ1860
P6104maintained by WikiProjectWikiProject EcologyQ10818384
P304page(s)95-110
P577publication date2011-10-04
P1433published inCritical Reviews in MicrobiologyQ5186671
P1476titleHorizontal transfer of dehalogenase genes involved in the catalysis of chlorinated compounds: evidence and ecological role
P478volume38

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cites work (P2860)
Q40255658Cathodic degradation of antibiotics: characterization and pathway analysis
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Q26765940Organohalide Respiring Bacteria and Reductive Dehalogenases: Key Tools in Organohalide Bioremediation
Q59055694Role of Dehalogenases in Aerobic Bacterial Degradation of Chlorinated Aromatic Compounds

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