Evolution of chlorocatechol catabolic pathways. Conclusions to be drawn from comparisons of lactone hydrolases

scientific article published on December 1994

Evolution of chlorocatechol catabolic pathways. Conclusions to be drawn from comparisons of lactone hydrolases is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P6179Dimensions Publication ID1001735286
P356DOI10.1007/BF00696467
P8608Fatcat IDrelease_dpmlmbdqpzgcnbe3yvo6hpoany
P698PubMed publication ID7765840

P2093author name stringM Schlömann
P2860cites workNon-Darwinian EvolutionQ7048737
Evolutionary Rate at the Molecular LevelQ22122432
Purification and characterization of dichloromuconate cycloisomerase from Alcaligenes eutrophus JMP 134Q24527355
Chemical structure and biodegradability of halogenated aromatic compounds. Conversion of chlorinated muconic acids into maleoylacetic acidQ24530751
Spontaneous point mutations that occur more often when advantageous than when neutralQ24532456
Adaptive mutation: the uses of adversityQ24596056
Improved tools for biological sequence comparisonQ24652199
Refined structure of dienelactone hydrolase at 1.8 AQ27685138
Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteinsQ27860987
The alpha/beta hydrolase foldQ28156084
The conversion of catechol and protocatechuate to beta-ketoadipate by Pseudomonas putida. II. Enzymes of the protocatechuate pathwayQ28257234
A constant rate of spontaneous mutation in DNA-based microbesQ28271032
Chromosomal location and evolutionary rate variation in enterobacterial genesQ28272766
Chemical structure and biodegradability of halogenated aromatic compounds. Two catechol 1,2-dioxygenases from a 3-chlorobenzoate-grown pseudomonadQ28276220
The origin of mutantsQ28288915
Molecular clock of silent substitution: at least six-fold preponderance of silent changes in mitochondrial genes over those in nuclear genesQ70566251
Catalysis by dienelactone hydrolase: a variation on the protease mechanismQ70726296
p-Chloromercuribenzoate specifically modifies thiols associated with the active sites of beta-ketoadipate enol-lactone hydrolase and succinyl CoA: beta-ketoadipate CoA transferaseQ70956641
[Degradation of 3-chlorobenzoic acid by a Pseudomonas putida strain]Q71173856
Silent nucleotide substitutions and the molecular evolutionary clockQ71379861
Substrate-induced activation of dienelactone hydrolase: an enzyme with a naturally occurring Cys-His-Asp triadQ72589747
Biosynthesis and cytoplasmic accumulation of a chlorinated catechol pigment during 3-chlorobenzoate aerobic co-metabolism in Pseudomonas fluorescensQ72647717
2,4-D metabolism: pathway of degradation of chlorocatechols by Arthrobacter spQ83685861
Unusual G + C content and codon usage in catIJF, a segment of the ben-cat supra-operonic cluster in the Acinetobacter calcoaceticus chromosomeQ42602983
Acquisition of apparent DNA slippage structures during extensive evolutionary divergence of pcaD and catD genes encoding identical catalytic activities in Acinetobacter calcoaceticusQ42605665
Lack of homology between two haloacetate dehalogenase genes encoded on a plasmid from Moraxella sp. strain BQ42607895
Chemical structure and biodegradability of halogenated aromatic compounds. Substituent effects on 1,2-dioxygenation of catecholQ42935823
Molecular considerations in the evolution of bacterial genesQ44186815
Preponderance of synonymous changes as evidence for the neutral theory of molecular evolutionQ44492208
Degradation of mono- and dichlorobenzoic acid isomers by two natural isolates of Alcaligenes denitrificansQ44844871
The use of fluorescein isothiocyanate in the determination of the bacterial biomass of grassland soilQ44940372
On the stochastic model for estimation of mutational distance between homologous proteinsQ48030660
Comparison of the nucleotide sequences of the meta-cleavage pathway genes of TOL plasmid pWW0 from Pseudomonas putida with other meta-cleavage genes suggests that both single and multiple nucleotide substitutions contribute to enzyme evolutionQ48121073
Cloning and characterization of a gene coding for the catechol 1,2-dioxygenase of Arthrobacter sp. mA3.Q48136865
Sequence of the plasmid-encoded catechol 1,2-dioxygenase-expressing gene, pheB, of phenol-degrading Pseudomonas sp. strain EST1001.Q48236327
Evolutionary relationships between catabolic pathways for aromatics: conservation of gene order and nucleotide sequences of catechol oxidation genes of pWW0 and NAH7 plasmidsQ48333815
2,4-D metabolism: enzymatic conversion of chloromaleylacetic acid to succinic acid.Q53738103
Genetic response of microbes to extreme challengesQ56904160
Genetic rearrangements in plasmids specifying total degradation of chlorinated benzoic acidsQ67259843
Chemical structure and biodegradability of halogenate aromatic compounds. Substituent effects on 1,2-dioxygenation of benzoic acidQ67375801
Chemical structure and biodegradability of halogenated aromatic compounds. Substituent effects on dehydrogenation of 3,5-cyclohexadiene-1,2-diol-1-carboxylic acidQ67375803
Characterization of isofunctional ring-cleaving enzymes in aniline and 3-chloroaniline degradation by Pseudomonas acidovorans CA28Q67576651
Maleylacetate reductase of Pseudomonas sp. strain B13: dechlorination of chloromaleylacetates, metabolites in the degradation of chloroaromatic compoundsQ67986721
X-ray crystallographic structure of dienelactone hydrolase at 2.8 AQ68024006
Degradation of 3-chlorobiphenyl by in vivo constructed hybrid pseudomonadsQ68658954
Microbial metabolism of chlorosalicylates: accelerated evolution by natural genetic exchangeQ69635759
Isolation and characterization of a 3-chlorobenzoate degrading pseudomonadQ69813539
Nucleotide homology and organization of chlorocatechol oxidation genes of plasmids pJP4 and pAC27Q69819367
Total degradation of various chlorobiphenyls by cocultures and in vivo constructed hybrid pseudomonadsQ70168938
Restriction mapping of a chlorobenzoate degradative plasmid and molecular cloning of the degradative genesQ70213070
Microbial degradation of halogenated compoundsQ41386181
Metabolism of 3-chloro-, 4-chloro-, and 3,5-dichlorobenzoate by a pseudomonadQ41664811
Degradation of mono-, di-, and trihalogenated benzoic acids by Pseudomonas aeruginosa JB2.Q41905428
Bacterial metabolism of 4-chlorophenoxyacetateQ41953421
Degradation of p-chlorotoluene by a mutant of Pseudomonas sp. strain JS6Q41967572
Degradation of 1,2,4-trichloro- and 1,2,4,5-tetrachlorobenzene by pseudomonas strains.Q42078346
Operon structure and nucleotide homology of the chlorocatechol oxidation genes of plasmids pJP4 and pAC27.Q42191544
Purification of 3,5-Dichlorocatechol 1,2-Dioxygenase, a Nonheme Iron Dioxygenase and a Key Enzyme in the Biodegradation of a Herbicide, 2,4-Dichlorophenoxyacetic acid (2,4-D), from Pseudomonas cepacia CSV90Q42277997
Conversion of 2-chloromaleylacetate in Alcaligenes eutrophus JMP134.Q42289369
CLUSTAL: a package for performing multiple sequence alignment on a microcomputerQ28293854
Biodegradation of diphenyl ether and its monohalogenated derivatives by Sphingomonas sp. strain SS3Q28317424
Overproduction, purification, and characterization of chlorocatechol dioxygenase, a non-heme iron dioxygenase with broad substrate toleranceQ28321416
Utilization and cooxidation of chlorinated phenols by Pseudomonas sp. B 13Q28326621
Cloning and characterization of plasmid-encoded genes for the degradation of 1,2-dichloro-, 1,4-dichloro-, and 1,2,4-trichlorobenzene of Pseudomonas sp. strain P51Q28334620
Sequence analysis of the Pseudomonas sp. strain P51 tcb gene cluster, which encodes metabolism of chlorinated catechols: evidence for specialization of catechol 1,2-dioxygenases for chlorinated substratesQ28335321
Different types of dienelactone hydrolase in 4-fluorobenzoate-utilizing bacteriaQ28335944
Enzymatic formation, stability, and spontaneous reactions of 4-fluoromuconolactone, a metabolite of the bacterial degradation of 4-fluorobenzoateQ28335947
Degradation of 1,2-dichlorobenzene by a Pseudomonas spQ28361308
Dienelactone hydrolase from Pseudomonas sp. strain B13Q28362192
Microbial mineralization of ring-substituted anilines through an ortho-cleavage pathwayQ28362631
2, 4-Dichlorophenoxyacetate Metabolism by Arthrobacter sp.: Accumulation of a ChlorobutenolideQ28364014
Metabolism of 4-chloro-2-methylphenoxyacetate by a soil pseudomonad. Preliminary evidence for the metabolic pathwayQ28364850
Metabolism of 4-chloro-2-methylphenoxyacetate by a soil pseudomonad. Ring-fission, lactonizing and delactonizing enzymesQ28364862
Bacterial metabolism of 2,4-dichlorophenoxyacetateQ28364863
Recent development of the neutral theory viewed from the Wrightian tradition of theoretical population geneticsQ28775811
Evolution in bacteria: evidence for a universal substitution rate in cellular genomesQ29618187
Fast and sensitive multiple sequence alignments on a microcomputerQ29618252
New data on excisions of Mu from E. coli MCS2 cast doubt on directed mutation hypothesisQ30670768
Directional mutation pressure and neutral molecular evolutionQ33567307
A model of evolutionary base substitutions and its application with special reference to rapid change of pseudogenesQ33995314
Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational systemQ34054909
Optimal alignments in linear spaceQ34177047
Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradationQ34634784
Microbial breakdown of halogenated aromatic pesticides and related compoundsQ35355248
Molecular mechanisms of genetic adaptation to xenobiotic compoundsQ35655423
Biodegradation and transformation of 4,4'- and 2,4-dihalodiphenyl ethers by Sphingomonas sp. strain SS33.Q35684424
Gene probe analysis of soil microbial populations selected by amendment with 2,4-dichlorophenoxyacetic acidQ35698834
Nucleotide sequence and initial functional characterization of the clcR gene encoding a LysR family activator of the clcABD chlorocatechol operon in Pseudomonas putidaQ35966343
Significant biogenesis of chlorinated aromatics by fungi in natural environmentsQ36050707
Oxidation of substituted phenols by Pseudomonas putida F1 and Pseudomonas sp. strain JS6Q36070418
Nucleotide sequencing and characterization of Pseudomonas putida catR: a positive regulator of the catBC operon is a member of the LysR familyQ36158196
Regulation of tfdCDEF by tfdR of the 2,4-dichlorophenoxyacetic acid degradation plasmid pJP4Q36161894
Organization and sequence analysis of the 2,4-dichlorophenol hydroxylase and dichlorocatechol oxidative operons of plasmid pJP4Q36161998
Transcriptional regulation, nucleotide sequence, and localization of the promoter of the catBC operon in Pseudomonas putidaQ36195473
Abundant expression of Pseudomonas genes for chlorocatechol metabolismQ36203438
DNA sequence of the Acinetobacter calcoaceticus catechol 1,2-dioxygenase I structural gene catA: evidence for evolutionary divergence of intradiol dioxygenases by acquisition of DNA sequence repetitionsQ36219672
Nucleotide sequence and expression of clcD, a plasmid-borne dienelactone hydrolase gene from Pseudomonas sp. strain B13.Q36228776
Plasmid specifying total degradation of 3-chlorobenzoate by a modified ortho pathway.Q36318146
Genetic homology between independently isolated chlorobenzoate-degradative plasmidsQ36325675
Extraordinarily high evolutionary rate of pseudogenes: evidence for the presence of selective pressure against changes between synonymous codonsQ36369489
Nucleotide sequence divergence and functional constraint in mRNA evolutionQ36419204
Cloning and complete nucleotide sequence determination of the catB gene encoding cis,cis-muconate lactonizing enzymeQ36468533
Characterization of aquatic bacteria and cloning of genes specifying partial degradation of 2,4-dichlorophenoxyacetic acid.Q36659662
Degradation of 1,4-dichlorobenzene by Alcaligenes sp. strain A175.Q36668269
Utilization of chlorobenzoates by microbial populations in sewageQ36729318
Regulation of the β-Ketoadipate Pathway in Alcaligenes eutrophusQ36773325
Spontaneous mutationQ37041840
Fidelity mechanisms in DNA replicationQ37285267
Evolution in bacterial plasmids and levels of selectionQ37921847
Nature and significance of microbial cometabolism of xenobioticsQ39839589
Unique and overlapping pollutant stress proteins of Escherichia coliQ39891969
Identification and characterization of a new plasmid carrying genes for degradation of 2,4-dichlorophenoxyacetate from Pseudomonas cepacia CSV90.Q39913932
Degradation of 1,4-dichlorobenzene by a Pseudomonas spQ39924754
Dienelactone hydrolase from Pseudomonas cepaciaQ39928416
Inability of muconate cycloisomerases to cause dehalogenation during conversion of 2-chloro-cis,cis-muconateQ39932720
Purification and characterization of maleylacetate reductase from Alcaligenes eutrophus JMP134(pJP4).Q39937471
The beta-ketoadipate pathwayQ39941782
Characterization of the Pseudomonas sp. strain P51 gene tcbR, a LysR-type transcriptional activator of the tcbCDEF chlorocatechol oxidative operon, and analysis of the regulatory regionQ39941940
Phenoxyacetic acid degradation by the 2,4-dichlorophenoxyacetic acid (TFD) pathway of plasmid pJP4: mapping and characterization of the TFD regulatory gene, tfdR.Q39947627
Recruitment of a chromosomally encoded maleylacetate reductase for degradation of 2,4-dichlorophenoxyacetic acid by plasmid pJP4.Q39949296
Characterization of Acinetobacter calcoaceticus catM, a repressor gene homologous in sequence to transcriptional activator genesQ39950491
Isolation and characterization of a new plasmid from a Flavobacterium sp. which carries the genes for degradation of 2,4-dichlorophenoxyacetateQ39954190
Molecular cloning and expression of the 3-chlorobenzoate-degrading genes from Pseudomonas sp. strain B13.Q39955567
Transposon mutagenesis and cloning analysis of the pathways for degradation of 2,4-dichlorophenoxyacetic acid and 3-chlorobenzoate in Alcaligenes eutrophus JMP134(pJP4).Q39966254
Isolation and characterization of the pesticide-degrading plasmid pJP1 from Alcaligenes paradoxusQ39990937
Microbial degradation of 1,3-dichlorobenzeneQ40054368
Microbial metabolism of haloaromatics: isolation and properties of a chlorobenzene-degrading bacterium.Q40058150
Isolation and genetic characterization of bacteria that degrade chloroaromatic compoundsQ40081516
Xenobiotic degradation in industrial sewage: haloaromatics as target substrates.Q40205311
Microbial co-metabolism and the degradation of organic compounds in natureQ40850745
News from the interface: the molecular structures of triacylglyceride lipasesQ40878876
Thiol protease-like active site found in the enzyme dienelactone hydrolase: Localization using biochemical, genetic, and structural toolsQ41157648
P433issue3-4
P407language of work or nameEnglishQ1860
P304page(s)301-321
P577publication date1994-12-01
P1433published inBiodegradationQ4914749
P1476titleEvolution of chlorocatechol catabolic pathways. Conclusions to be drawn from comparisons of lactone hydrolases
P478volume5

Reverse relations

cites work (P2860)
Q346570264-sulfomuconolactone hydrolases from Hydrogenophaga intermedia S1 and Agrobacterium radiobacter S2.
Q39680415A new modified ortho cleavage pathway of 3-chlorocatechol degradation by Rhodococcus opacus 1CP: genetic and biochemical evidence
Q39503234Altering catalytic properties of 3-chlorocatechol-oxidizing extradiol dioxygenase from Sphingomonas xenophaga BN6 by random mutagenesis
Q45092626Amphipatic molecules affect the kinetic profile of Pseudomonas putida chlorocatechol 1,2-dioxygenase.
Q47706140Amplification of putative chlorocatechol dioxygenase gene fragments from alpha- and beta-Proteobacteria
Q35797931Bacterial degradation of chlorophenols: pathways, biochemica, and genetic aspects
Q53836394Biochemical and structural characterization of a novel cold-active esterase-like protein from the psychrophilic yeast Glaciozyma antarctica.
Q44708841Bioremediation of chlorobenzene-contaminated ground water in an in situ reactor mediated by hydrogen peroxide
Q37799663Bioremediation of wastewaters with recalcitrant organic compounds and metals by aerobic granules
Q35192058Capture of a catabolic plasmid that encodes only 2,4-dichlorophenoxyacetic acid:alpha-ketoglutaric acid dioxygenase (TfdA) by genetic complementation.
Q43612656Characterization of (R/S)-mecoprop [2-(2-methyl-4-chlorophenoxy) propionic acid]-degrading Alcaligenes sp.CS1 and Ralstonia sp. CS2 isolated from agricultural soils
Q42004006Characterization of a gene cluster involved in 4-chlorocatechol degradation by Pseudomonas reinekei MT1.
Q39564777Characterization of a protocatechuate catabolic gene cluster from Rhodococcus opacus 1CP: evidence for a merged enzyme with 4-carboxymuconolactone-decarboxylating and 3-oxoadipate enol-lactone-hydrolyzing activity
Q39844012Characterization of catechol catabolic genes from Rhodococcus erythropolis 1CP
Q77390689Characterization of catechol- and chlorocatechol-degrading activity in the ortho-chlorinated benzoic acid-degrading Pseudomonas sp. CPE2 strain
Q39836769Characterization of muconate and chloromuconate cycloisomerase from Rhodococcus erythropolis 1CP: indications for functionally convergent evolution among bacterial cycloisomerases
Q44048238Characterization of polychlorinated biphenyl-degrading bacteria isolated from contaminated sites in Czechia
Q33994819Characterization of the genes for two protocatechuate 3, 4-dioxygenases from the 4-sulfocatechol-degrading bacterium Agrobacterium radiobacter strain S2.
Q39566626Characterization of the maleylacetate reductase MacA of Rhodococcus opacus 1CP and evidence for the presence of an isofunctional enzyme
Q28351206Chlorocatechols substituted at positions 4 and 5 are substrates of the broad-spectrum chlorocatechol 1,2-dioxygenase of Pseudomonas chlororaphis RW71
Q35156663Chloromuconolactone dehalogenase ClcF of actinobacteria
Q39890979Conversion of 2-fluoromuconate to cis-dienelactone by purified enzymes of Rhodococcus opacus 1cp
Q38501491Conversion of 3-chlorocatechol by various catechol 2,3-dioxygenases and sequence analysis of the chlorocatechol dioxygenase region of Pseudomonas putida GJ31.
Q42200497Crystallization and preliminary characterization of chloromuconolactone dehalogenase from Rhodococcus opacus 1CP
Q46304725Degradation of 3-chlorobenzoate and phenol singly and in mixture by a mixed culture of two ortho-pathway-following Pseudomonas strains
Q28379305Degradation of chloroaromatics: purification and characterization of a novel type of chlorocatechol 2,3-dioxygenase of Pseudomonas putida GJ31.
Q48046270Degradation of fluorobenzene and its central metabolites 3-fluorocatechol and 2-fluoromuconate by Burkholderia fungorum FLU100.
Q39107355Degradation of fluorobenzene by Rhizobiales strain F11 via ortho cleavage of 4-fluorocatechol and catechol
Q42937237Degradation of toluene by ortho cleavage enzymes in Burkholderia fungorum FLU100.
Q43238964Determination of the active site of Sphingobium chlorophenolicum 2,6-dichlorohydroquinone dioxygenase (PcpA).
Q28379308Detoxification of protoanemonin by dienelactone hydrolase
Q81367377Differential organization and transcription of the cat2 gene cluster in aniline-assimilating Acinetobacter lwoffii K24
Q40329670EPR studies of chlorocatechol 1,2-dioxygenase: evidences of iron reduction during catalysis and of the binding of amphipatic molecules
Q28367846Evidence that operons tcb, tfd, and clc encode maleylacetate reductase, the fourth enzyme of the modified ortho pathway
Q39562811Evolution of a pathway for chlorobenzene metabolism leads to natural attenuation in contaminated groundwater
Q39564783Evolutionary relationship between chlorocatechol catabolic enzymes from Rhodococcus opacus 1CP and their counterparts in proteobacteria: sequence divergence and functional convergence.
Q34766809Expression of chlorocatechol 1,2-dioxygenase and chlorocatechol 2,3-dioxygenase genes in chlorobenzene-contaminated subsurface samples
Q43352598Formation and microbial community analysis of chloroanilines-degrading aerobic granules in the sequencing airlift bioreactor
Q37572327Genetic analysis of phenoxyalkanoic acid degradation in Sphingomonas herbicidovorans MH.
Q28346008Genetic and biochemical characterization of a novel monoterpene epsilon-lactone hydrolase from Rhodococcus erythropolis DCL14
Q38670882Groundwater contamination with 2,6-dichlorobenzamide (BAM) and perspectives for its microbial removal
Q33708079High levels of endemicity of 3-chlorobenzoate-degrading soil bacteria
Q37941835Horizontal transfer of dehalogenase genes involved in the catalysis of chlorinated compounds: evidence and ecological role
Q47336842Metabolism of aromatics by Trichosporon oleaginosus while remaining oleaginous
Q38502602Microbial degradation of chloroaromatics: use of the meta-cleavage pathway for mineralization of chlorobenzene
Q36289677Mobile catabolic genes in bacteria
Q39678351Monitoring key reactions in degradation of chloroaromatics by in situ (1)H nuclear magnetic resonance: solution structures of metabolites formed from cis-dienelactone
Q44111731Multistep conversion of para-substituted phenols by phenol hydroxylase and 2,3-dihydroxybiphenyl 1,2-dioxygenase
Q40173958New Bacterial Pathway for 4- and 5-Chlorosalicylate Degradation via 4-Chlorocatechol and Maleylacetate in Pseudomonas sp. Strain MT1
Q59293380Phenolic Acid Sorption to Biochars from Mixtures of Feedstock Materials
Q39481276Selection of clc, cba, and fcb chlorobenzoate-catabolic genotypes from groundwater and surface waters adjacent to the Hyde park, Niagara Falls, chemical landfill
Q33719711Substrate specificity of and product formation by muconate cycloisomerases: an analysis of wild-type enzymes and engineered variants
Q38555539The biodegradation vs. biotransformation of fluorosubstituted aromatics
Q33984281The chlorocatechol-catabolic transposon Tn5707 of Alcaligenes eutrophus NH9, carrying a gene cluster highly homologous to that in the 1,2,4-trichlorobenzene-degrading bacterium Pseudomonas sp. strain P51, confers the ability to grow on 3-chlorobenzo
Q41671357The phylogenetic distribution of a transposable dioxygenase from the Niagara River watershed
Q39843605The tfdR gene product can successfully take over the role of the insertion element-inactivated TfdT protein as a transcriptional activator of the tfdCDEF gene cluster, which encodes chlorocatechol degradation in Ralstonia eutropha JMP134(pJP4)
Q33993090Transcriptional activation of the chlorocatechol degradative genes of Ralstonia eutropha NH9.
Q39679842Two chlorocatechol catabolic gene modules on plasmid pJP4.
Q33939941Two structurally different dienelactone hydrolases (TfdEI and TfdEII) from Cupriavidus necator JMP134 plasmid pJP4 catalyse cis- and trans-dienelactones with similar efficiency.

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