| scholarly article | Q13442814 |
| P50 | author | Jonathan A. Eisen | Q2000017 |
| Claire M. Fraser | Q3678978 | ||
| Karen E. Nelson | Q20829795 | ||
| Naomi Ward | Q21337511 | ||
| John F Heidelberg | Q30503815 | ||
| William C. Nelson | Q30517950 | ||
| Lorenz Adrian | Q43189718 | ||
| Adam Phillippy | Q57779055 | ||
| Lauren M Brinkac | Q77544079 | ||
| Robert T DeBoy | Q77545954 | ||
| Hoda Khouri | Q77559348 | ||
| Derrick E Fouts | Q90167626 | ||
| Stephen H. Zinder | Q114411598 | ||
| Marjorie Impraim | Q117283699 | ||
| Heather A Forberger | Q117283703 | ||
| P2093 | author name string | Ramana Madupu | |
| Robert J Dodson | |||
| Jeffrey M Robinson | |||
| Rekha Seshadri | |||
| Kevin Tran | |||
| Sean C Daugherty | |||
| James F Kolonay | |||
| Steven A Sullivan | |||
| Barbara A Methe | |||
| Katherine H Kang | |||
| P433 | issue | 5706 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Dehalococcoides ethenogenes | Q2661868 |
| P304 | page(s) | 105-108 | |
| P577 | publication date | 2005-01-01 | |
| P1433 | published in | Science | Q192864 |
| P1476 | title | Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes | |
| P478 | volume | 307 |
| Q35215834 | A 1,1,1-trichloroethane-degrading anaerobic mixed microbial culture enhances biotransformation of mixtures of chlorinated ethenes and ethanes |
| Q43298041 | A Dehalococcoides-containing co-culture that dechlorinates tetrachloroethene to trans-1,2-dichloroethene |
| Q38717972 | A H2 -oxidizing, 1,2,3-trichlorobenzene-reducing multienzyme complex isolated from the obligately organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1. |
| Q24810727 | A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts |
| Q36254594 | A comparative genomics and reductive dehalogenase gene transcription study of two chloroethene-respiring bacteria, Dehalococcoides mccartyi strains MB and 11a |
| Q44460504 | A conceptual model linking functional gene expression and reductive dechlorination rates of chlorinated ethenes in clay rich groundwater sediment. |
| Q38069492 | A genomic approach to the cryptic secondary metabolome of the anaerobic world |
| Q35844313 | A novel reductive dehalogenase, identified in a contaminated groundwater enrichment culture and in Desulfitobacterium dichloroeliminans strain DCA1, is linked to dehalogenation of 1,2-dichloroethane |
| Q47395014 | A switch of chlorinated substrate causes emergence of a previously undetected native Dehalobacter population in an established Dehalococcoides-dominated chloroethene-dechlorinating enrichment culture |
| Q47663290 | Abiotic reductive dechlorination of cis-DCE by ferrous monosulfide mackinawite |
| Q34512804 | Abundance and diversity of organohalide-respiring bacteria in lake sediments across a geographical sulfur gradient. |
| Q57843134 | Bacteria to the rescue |
| Q28077081 | Bacterial Biotransformation of Pentachlorophenol and Micropollutants Formed during Its Production Process |
| Q41693573 | Biodegradation of Volatile Organic Compounds and Their Effects on Biodegradability under Co-Existing Conditions |
| Q42571530 | Carbon, metals, and grain size correlate with bacterial community structure in sediments of a high arsenic aquifer. |
| Q34703771 | Characterization of four TCE-dechlorinating microbial enrichments grown with different cobalamin stress and methanogenic conditions. |
| Q33682086 | Characterizing the metabolism of Dehalococcoides with a constraint-based model |
| Q55362083 | Chlorinated Electron Acceptor Abundance Drives Selection of Dehalococcoides mccartyi (D. mccartyi) Strains in Dechlorinating Enrichment Cultures and Groundwater Environments. |
| Q37677341 | Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling |
| Q57017321 | Comparative Apicomplexan genomics |
| Q36710507 | Comparative genomics of "Dehalococcoides ethenogenes" 195 and an enrichment culture containing unsequenced "Dehalococcoides" strains |
| Q35092532 | Comparative genomics of two newly isolated Dehalococcoides strains and an enrichment using a genus microarray |
| Q34347988 | Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community |
| Q35633957 | Comparative proteomics of Dehalococcoides spp. reveals strain-specific peptides associated with activity |
| Q62786395 | Comparison of 1,2-dichloroethane, dichloroethene and vinyl chloride carbon stable isotope fractionation during dechlorination by two Dehalococcoides strains |
| Q37544239 | Complete genome sequence of Dehalobacter restrictus PER-K23(T.). |
| Q24594121 | Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to "Dehalococcoides" strains |
| Q33400349 | Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum |
| Q22065442 | Complete genome sequence of the dehalorespiring bacterium Desulfitobacterium hafniense Y51 and comparison with Dehalococcoides ethenogenes 195. |
| Q48091012 | Conductive magnetite nanoparticles accelerate the microbial reductive dechlorination of trichloroethene by promoting interspecies electron transfer processes |
| Q94101720 | Current Awareness on Comparative and Functional Genomics |
| Q33255505 | Data mining for proteins characteristic of clades |
| Q50734728 | Deep biosphere-related bacteria within the subsurface of tidal flat sediments |
| Q24618254 | Deep phylogeny, ancestral groups and the four ages of life |
| Q53330114 | Dehalococcoides has a dehalogenation complex. |
| Q42120992 | Dehalogenation activities and distribution of reductive dehalogenase homologous genes in marine subsurface sediments. |
| Q46790524 | Dehalogenation of diverse halogenated substrates by a highly enriched Dehalococcoides-containing culture derived from the contaminated mega-site in Bitterfeld |
| Q46913762 | Dehalogenimonas lykanthroporepellens BL-DC-9T simultaneously transcribes many rdhA genes during organohalide respiration with 1,2-DCA, 1,2-DCP, and 1,2,3-TCP as electron acceptors |
| Q40447859 | Dehalogenimonas sp. Strain WBC-2 Genome and Identification of Its trans-Dichloroethene Reductive Dehalogenase, TdrA. |
| Q42121581 | Dehalorespiration with polychlorinated biphenyls by an anaerobic ultramicrobacterium |
| Q42849491 | Design and verification of a pangenome microarray oligonucleotide probe set for Dehalococcoides spp. |
| Q34570418 | Development and characterization of stable sediment-free anaerobic bacterial enrichment cultures that dechlorinate aroclor 1260. |
| Q34937455 | Discovery of epoxyqueuosine (oQ) reductase reveals parallels between halorespiration and tRNA modification |
| Q35023609 | Discrimination of multiple Dehalococcoides strains in a trichloroethene enrichment by quantification of their reductive dehalogenase genes |
| Q44051385 | Diversity of dechlorination pathways and organohalide respiring bacteria in chlorobenzene dechlorinating enrichment cultures originating from river sludge |
| Q42878896 | Diversity of reductive dehalogenase genes from environmental samples and enrichment cultures identified with degenerate primer PCR screens |
| Q37822907 | Diversity, biological roles and biosynthetic pathways for sugar-glycerate containing compatible solutes in bacteria and archaea |
| Q36895777 | Double trouble: medical implications of genetic duplication and amplification in bacteria |
| Q34283775 | Draft Genome Sequence of Polychlorinated Biphenyl-Dechlorinating Dehalococcoides mccartyi Strain SG1, Which Carries a Circular Putative Plasmid |
| Q99237509 | Dual Element (C/Cl) Isotope Analysis Indicates Distinct Mechanisms of Reductive Dehalogenation of Chlorinated Ethenes and Dichloroethane in Dehalococcoides mccartyi Strain BTF08 With Defined Reductive Dehalogenase Inventories |
| Q84162995 | Effects of bioaugmentation on indigenous PCB dechlorinating activity in sediment microcosms |
| Q39171849 | Electrobioremediation of oil spills. |
| Q35534794 | Enhanced reductive dechlorination of polychlorinated biphenyl impacted sediment by bioaugmentation with a dehalorespiring bacterium |
| Q37450947 | Evidence for nitrogen fixation by "Dehalococcoides ethenogenes" strain 195. |
| Q40535762 | Experimental validation of in silico model-predicted isocitrate dehydrogenase and phosphomannose isomerase from Dehalococcoides mccartyi |
| Q42432595 | Expression of reductive dehalogenase genes in Dehalococcoides ethenogenes strain 195 growing on tetrachloroethene, trichloroethene, or 2,3-dichlorophenol. |
| Q64265209 | Function of Biohydrogen Metabolism and Related Microbial Communities in Environmental Bioremediation |
| Q34841172 | Functional genomics of corrinoid starvation in the organohalide-respiring bacterium Dehalobacter restrictus strain PER-K23. |
| Q41086110 | Functional heterologous production of reductive dehalogenases from Desulfitobacterium hafniense strains |
| Q35220543 | Genome sequence of Aeromonas hydrophila ATCC 7966T: jack of all trades |
| Q22122113 | Genome sequence of the chlorinated compound–respiring bacterium Dehalococcoides species strain CBDB1 |
| Q37031155 | Genome sequence of the organohalide-respiring Dehalogenimonas alkenigignens type strain (IP3-3(T)). |
| Q28289260 | Genome sequences of two dehalogenation specialists – Dehalococcoides mccartyi strains BTF08 and DCMB5 enriched from the highly polluted Bitterfeld region |
| Q37531995 | Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi |
| Q34082625 | Genomic characterization of three unique Dehalococcoides that respire on persistent polychlorinated biphenyls |
| Q37248338 | Genomic islands: tools of bacterial horizontal gene transfer and evolution |
| Q35074945 | Genomic, proteomic, and biochemical analysis of the organohalide respiratory pathway in Desulfitobacterium dehalogenans |
| Q46239903 | Global gene expression of Dehalococcoides within a robust dynamic TCE-dechlorinating community under conditions of periodic substrate supply. |
| Q48236871 | Global transcriptome analysis of the tetrachloroethene-dechlorinating bacterium Desulfitobacterium hafniense Y51 in the presence of various electron donors and terminal electron acceptors |
| Q35804797 | Global transcriptomic and proteomic responses of Dehalococcoides ethenogenes strain 195 to fixed nitrogen limitation |
| Q37941835 | Horizontal transfer of dehalogenase genes involved in the catalysis of chlorinated compounds: evidence and ecological role |
| Q89602512 | Identification and characterization of a bacterial core methionine synthase |
| Q35274293 | Identification and characterization of a re-citrate synthase in Dehalococcoides strain CBDB1 |
| Q35045107 | Identification and environmental distribution of dcpA, which encodes the reductive dehalogenase catalyzing the dichloroelimination of 1,2-dichloropropane to propene in organohalide-respiring chloroflexi |
| Q43112713 | Identification and transcriptional analysis of trans-DCE-producing reductive dehalogenases in Dehalococcoides species. |
| Q45843291 | Identification of Multiple Dehalogenase Genes Involved in Tetrachloroethene-to-Ethene Dechlorination in a Dehalococcoides-Dominated Enrichment Culture. |
| Q33302487 | Identification of a chlorobenzene reductive dehalogenase in Dehalococcoides sp. strain CBDB1. |
| Q48271348 | Identification of a multi-protein reductive dehalogenase complex in Dehalococcoides mccartyi strain CBDB1 suggests a protein-dependent respiratory electron transport chain obviating quinone involvement |
| Q34332291 | Identification of a reductive tetrachloroethene dehalogenase in Shewanella sediminis |
| Q46797318 | Identification of novel perchloroethene-respiring microorganisms in anoxic river sediment by RNA-based stable isotope probing. |
| Q28830415 | Identification of specific corrinoids reveals corrinoid modification in dechlorinating microbial communities |
| Q42579257 | Identity and Substrate Specificity of Reductive Dehalogenases Expressed in Dehalococcoides-Containing Enrichment Cultures Maintained on Different Chlorinated Ethenes |
| Q33674469 | Incomplete Wood-Ljungdahl pathway facilitates one-carbon metabolism in organohalide-respiring Dehalococcoides mccartyi |
| Q36187481 | Inferring Gene Networks for Strains of Dehalococcoides Highlights Conserved Relationships between Genes Encoding Core Catabolic and Cell-Wall Structural Proteins |
| Q35844324 | Influence of vitamin B12 and cocultures on the growth of Dehalococcoides isolates in defined medium |
| Q46843568 | Insights into organohalide respiration and the versatile catabolism of Sulfurospirillum multivorans gained from comparative genomics and physiological studies |
| Q90228388 | Insights into origins and function of the unexplored majority of the reductive dehalogenase gene family as a result of genome assembly and ortholog group classification |
| Q37301993 | Investigation of carbon metabolism in "Dehalococcoides ethenogenes" strain 195 by use of isotopomer and transcriptomic analyses |
| Q33487081 | Isolation and characterization of "Dehalococcoides" sp. strain MB, which dechlorinates tetrachloroethene to trans-1,2-dichloroethene |
| Q48276660 | Isolation and characterization of tetrachloroethylene- and cis-1,2-dichloroethylene-dechlorinating propionibacteria |
| Q30852331 | Isolation and genomic characterization of a Dehalococcoides strain suggests genomic rearrangement during culture |
| Q46023062 | Isolation of two new Dehalococcoides mccartyi strains with dissimilar dechlorination functions and their characterization by comparative genomics via microarray analysis. |
| Q33515261 | Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides |
| Q34261225 | Meta-analyses of Dehalococcoides mccartyi strain 195 transcriptomic profiles identify a respiration rate-related gene expression transition point and interoperon recruitment of a key oxidoreductase subunit |
| Q34179603 | Metagenomic analysis of a stable trichloroethene-degrading microbial community. |
| Q41658910 | Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions. |
| Q33256603 | Microbial community diversity associated with carbon and nitrogen cycling in permeable shelf sediments |
| Q39220999 | Microbial degradation of chloroethenes: a review. |
| Q33960498 | Microbial diversity of an anoxic zone of a hydroelectric power station reservoir in Brazilian Amazonia |
| Q27651737 | Molecular basis of halorespiration control by CprK, a CRP-FNR type transcriptional regulator |
| Q33357278 | Monitoring abundance and expression of "Dehalococcoides" species chloroethene-reductive dehalogenases in a tetrachloroethene-dechlorinating flow column |
| Q40717124 | Multiple reductive-dehalogenase-homologous genes are simultaneously transcribed during dechlorination by Dehalococcoides-containing cultures |
| Q43527827 | Natural Attenuation in Streambed Sediment Receiving Chlorinated Solvents from Underlying Fracture Networks. |
| Q37862829 | Natural and enhanced anaerobic degradation of 1,1,1-trichloroethane and its degradation products in the subsurface--a critical review |
| Q35148067 | New insights into Dehalococcoides mccartyi metabolism from a reconstructed metabolic network-based systems-level analysis of D. mccartyi transcriptomes |
| Q28763948 | New metrics for comparative genomics |
| Q48080918 | Nitrogen fixation by reductively dechlorinating bacteria |
| Q33281119 | Nitrogen fixation in eukaryotes--new models for symbiosis |
| Q90590115 | Nitrous Oxide Is a Potent Inhibitor of Bacterial Reductive Dechlorination |
| Q58579417 | Normalized Quantitative PCR Measurements as Predictors for Ethene Formation at Sites Impacted with Chlorinated Ethenes |
| Q33213833 | On the bottom of the deep blue sea. |
| Q28706631 | Organic cofactors in the metabolism of Dehalococcoides mccartyi strains |
| Q26997313 | Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases |
| Q34083044 | PCB dechlorinases revealed at last |
| Q34232713 | Phospholipid furan fatty acids and ubiquinone-8: lipid biomarkers that may protect dehalococcoides strains from free radicals. |
| Q30558227 | Phylogenetic framework and molecular signatures for the class Chloroflexi and its different clades; proposal for division of the class Chloroflexia class. nov. [corrected] into the suborder Chloroflexineae subord. nov., consisting of the emended fam |
| Q34076432 | Phylogenetic microarray analysis of a microbial community performing reductive dechlorination at a TCE-contaminated site |
| Q42876397 | Prediction of effective genome size in metagenomic samples |
| Q35691491 | Prospects for the study of evolution in the deep biosphere |
| Q33322994 | Quantifying genes and transcripts to assess the in situ physiology of "Dehalococcoides" spp. in a trichloroethene-contaminated groundwater site |
| Q34570669 | Quantitative PCR targeting 16S rRNA and reductive dehalogenase genes simultaneously monitors multiple Dehalococcoides strains |
| Q47720025 | Reconstructed genomes of novel Dehalococcoides mccartyi strains from 1,2,3,4-tetrachlorodibenzo-p-dioxin-dechlorinating enrichment cultures reveal divergent reductive dehalogenase gene profiles |
| Q59326148 | Reductive dechlorination of 1,2,3,7,8-pentachlorodibenzo-p-dioxin and Aroclor 1260, 1254 and 1242 by a mixed culture containing Dehalococcoides mccartyi strain 195 |
| Q46878633 | Reductive dechlorination of chloroethenes by Dehalococcoides-containing cultures enriched from a polychlorinated-dioxin-contaminated microcosm |
| Q35023592 | Reductive dehalogenase gene expression as a biomarker for physiological activity of Dehalococcoides spp. |
| Q34772773 | Regulation of nitrogenase by 2-oxoglutarate-reversible, direct binding of a PII-like nitrogen sensor protein to dinitrogenase |
| Q40185618 | Regulation of reductive dehalogenase gene transcription in Dehalococcoides mccartyi |
| Q35482851 | Relating mRNA and protein biomarker levels in a Dehalococcoides and Methanospirillum-containing community. |
| Q42119100 | Retentive memory of bacteria: Long-term regulation of dehalorespiration in Sulfurospirillum multivorans |
| Q30395667 | Role of "Dehalococcoides" spp. in the anaerobic transformation of hexachlorobenzene in European rivers |
| Q21030522 | Rooting the tree of life by transition analyses |
| Q28543673 | SPINE: SParse eIgengene NEtwork linking gene expression clusters in Dehalococcoides mccartyi to perturbations in experimental conditions |
| Q35530697 | Selective utilization of exogenous amino acids by Dehalococcoides ethenogenes strain 195 and its effects on growth and dechlorination activity |
| Q37123417 | Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi) in Sulfur Cycling |
| Q41910789 | Single-nucleotide primer extension assay for detection and sequence typing of "Dehalococcoides" spp. |
| Q36573697 | Sister Dehalobacter Genomes Reveal Specialization in Organohalide Respiration and Recent Strain Differentiation Likely Driven by Chlorinated Substrates |
| Q54544036 | Site-specific microbial communities in three PCB-impacted sediments are associated with different in situ dechlorinating activities. |
| Q33920363 | Site-specific mobilization of vinyl chloride respiration islands by a mechanism common in Dehalococcoides |
| Q58697948 | Spatial Distribution of PCB Dechlorinating Bacteria and Activities in Contaminated Soil |
| Q42014756 | Stable isotope peptide mass spectrometry to decipher amino acid metabolism in Dehalococcoides strain CBDB1. |
| Q30313967 | Structural basis for tRNA modification by Elp3 from Dehalococcoides mccartyi |
| Q37712883 | Sustainable growth of Dehalococcoides mccartyi 195 by corrinoid salvaging and remodeling in defined lactate-fermenting consortia |
| Q35678625 | Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses |
| Q43341411 | Temperature dependence of anaerobic TCE-dechlorination in a highly enriched Dehalococcoides-containing culture |
| Q34973967 | Temporal expression of respiratory genes in an enrichment culture containing Dehalococcoides ethenogenes |
| Q36672631 | Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase |
| Q24680873 | The Dehalococcoides population in sediment-free mixed cultures metabolically dechlorinates the commercial polychlorinated biphenyl mixture aroclor 1260 |
| Q42369906 | The MarR-Type Regulator Rdh2R Regulates rdh Gene Transcription in Dehalococcoides mccartyi Strain CBDB1 |
| Q42315436 | The NiFe Hydrogenases of the Tetrachloroethene-Respiring Epsilonproteobacterium Sulfurospirillum multivorans: Biochemical Studies and Transcription Analysis. |
| Q36954058 | The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum). |
| Q33723907 | The dynamics of microbial partnerships in the coral Isopora palifera |
| Q33736839 | The effect of co-substrate activation on indigenous and bioaugmented PCB dechlorinating bacterial communities in sediment microcosms. |
| Q33264073 | The genome and transcriptomes of the anti-tumor agent Clostridium novyi-NT. |
| Q37014977 | The genome of Rhodobacter sphaeroides strain 2.4.1 encodes functional cobinamide salvaging systems of archaeal and bacterial origins |
| Q33799837 | The little bacteria that can - diversity, genomics and ecophysiology of 'Dehalococcoides' spp. in contaminated environments |
| Q42674902 | The phylogenetic placement of the non-phototrophic, Gram-positive thermophile ‘Thermobaculum terrenum’ and branching orders within the phylum ‘ Chloroflexi ’ inferred from gene order comparisons |
| Q36156495 | The physiological opportunism of Desulfitobacterium hafniense strain TCE1 towards organohalide respiration with tetrachloroethene |
| Q33231939 | The reductive dechlorination of 2,3,4,5-tetrachlorobiphenyl in three different sediment cultures: evidence for the involvement of phylogenetically similar Dehalococcoides-like bacterial populations |
| Q34332288 | The restricted metabolism of the obligate organohalide respiring bacterium Dehalobacter restrictus: lessons from tiered functional genomics |
| Q43153339 | Transcription analysis of genes encoding homologues of reductive dehalogenases in "Dehalococcoides" sp. strain CBDB1 by using terminal restriction fragment length polymorphism and quantitative PCR. |
| Q33254214 | Transcription and mass-spectroscopic proteomic studies of electron transport oxidoreductases in Dehalococcoides ethenogenes |
| Q34104656 | Transcriptional analysis of a Dehalococcoides-containing microbial consortium reveals prophage activation |
| Q34143331 | Transcriptional expression of the tceA gene in a Dehalococcoides-containing microbial enrichment |
| Q47826469 | Triple-element compound-specific stable isotope analysis of 1,2-dichloroethane for characterization of the underlying dehalogenation reaction in two Dehalococcoides mccartyi strains. |
| Q36186216 | Unexpected specificity of interspecies cobamide transfer from Geobacter spp. to organohalide-respiring Dehalococcoides mccartyi strains |
| Q42845847 | Unusual codon bias in vinyl chloride reductase genes of Dehalococcoides species. |
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