| scholarly article | Q13442814 |
| P50 | author | David M. Goldberg | Q30513721 |
| P2093 | author name string | Marshall Bern | |
| Eugenia Lyashenko | |||
| P2860 | cites work | Automatic selection of representative proteins for bacterial phylogeny | Q21093606 |
| A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land | Q21283975 | ||
| Genome trees constructed using five different approaches suggest new major bacterial clades | Q21284133 | ||
| The COG database: an updated version includes eukaryotes | Q21284294 | ||
| The phylogeny and signature sequences characteristics of Fibrobacteres, Chlorobi, and Bacteroidetes | Q21558615 | ||
| Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes | Q22065809 | ||
| Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism | Q22065988 | ||
| CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice | Q24286950 | ||
| Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
| Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes | Q24548562 | ||
| The COG database: new developments in phylogenetic classification of proteins from complete genomes | Q24605347 | ||
| MUSCLE: multiple sequence alignment with high accuracy and high throughput | Q24613456 | ||
| Improved tools for biological sequence comparison | Q24652199 | ||
| Evolutionary rate depends on number of protein-protein interactions independently of gene expression level | Q24791005 | ||
| Molecular evidence for the early evolution of photosynthesis. | Q42633228 | ||
| Diplopod hemocyanin sequence and the phylogenetic position of the Myriapoda | Q42655395 | ||
| Protein dispensability and rate of evolution | Q46183570 | ||
| Deducing the pattern of arthropod phytogeny from mitochondrial DNA rearrangements | Q47198327 | ||
| The closest BLAST hit is often not the nearest neighbor | Q50114443 | ||
| Expression of the head gene Lox22-Otx in the leech Helobdella and the origin of the bilaterian body plan. | Q52184654 | ||
| Whole-Genome Analysis of Photosynthetic Prokaryotes | Q56680896 | ||
| Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria | Q56783033 | ||
| Genomic function (communication arising): Rate of evolution and gene dispensability | Q56994165 | ||
| Gene order is not conserved in bacterial evolution | Q71476689 | ||
| Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in protein-protein interactions data sets | Q24792354 | ||
| Evolution of gene fusions: horizontal transfer versus independent events | Q24793848 | ||
| GenBank | Q24795080 | ||
| From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria | Q24795892 | ||
| No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly | Q24796770 | ||
| Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes | Q24797719 | ||
| The process of genome shrinkage in the obligate symbiont Buchnera aphidicola | Q24799605 | ||
| The relationship of protein conservation and sequence length | Q24799730 | ||
| Measuring genome conservation across taxa: divided strains and united kingdoms | Q24801447 | ||
| A simple dependence between protein evolution rate and the number of protein-protein interactions | Q24806605 | ||
| Basic local alignment search tool | Q25938991 | ||
| Profile hidden Markov models | Q27860536 | ||
| A general method applicable to the search for similarities in the amino acid sequence of two proteins | Q27860563 | ||
| A genomic perspective on protein families | Q27860913 | ||
| Expression of the 22 nucleotide let-7 heterochronic RNA throughout the Metazoa: a role in life history evolution? | Q28181671 | ||
| Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles | Q29039336 | ||
| Animal mitochondrial genomes | Q29547362 | ||
| Automatic clustering of orthologs and in-paralogs from pairwise species comparisons | Q29615401 | ||
| Rare genomic changes as a tool for phylogenetics | Q29615984 | ||
| Genome phylogeny based on gene content | Q29617415 | ||
| Symbiobacterium thermophilum gen. nov., sp. nov., a symbiotic thermophile that depends on co-culture with a Bacillus strain for growth | Q30617277 | ||
| Essential genes are more evolutionarily conserved than are nonessential genes in bacteria | Q31066425 | ||
| Evolutionary relationships among photosynthetic prokaryotes (Heliobacterium chlorum, Chloroflexus aurantiacus, cyanobacteria, Chlorobium tepidum and proteobacteria): implications regarding the origin of photosynthesis | Q33864302 | ||
| Rooting the eukaryote tree by using a derived gene fusion | Q33960025 | ||
| The enigmatic planctomycetes may hold a key to the origins of methanogenesis and methylotrophy | Q33976602 | ||
| Signature sequences in diverse proteins provide evidence for the late divergence of the Order Aquificales. | Q34324809 | ||
| Contribution of sponge genes to unravel the genome of the hypothetical ancestor of Metazoa (Urmetazoa). | Q34395601 | ||
| Daddy, where did (PS)I come from? | Q34425059 | ||
| Early evolution of photosynthesis: clues from nitrogenase and chlorophyll iron proteins | Q36451791 | ||
| Genomic evidence for two functionally distinct gene classes. | Q37393145 | ||
| Evolutionary origin, diversification and specialization of eukaryotic MutS homolog mismatch repair proteins | Q39542069 | ||
| Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli | Q40901286 | ||
| Is sparse taxon sampling a problem for phylogenetic inference? | Q42422738 | ||
| P433 | issue | 16 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | data mining | Q172491 |
| P304 | page(s) | 4342-4353 | |
| P577 | publication date | 2006-08-26 | |
| P1433 | published in | Nucleic Acids Research | Q135122 |
| P1476 | title | Data mining for proteins characteristic of clades | |
| P478 | volume | 34 |
| Q56977731 | Automatic Perception of Chemical Similarities Between Metabolic Pathways |
| Q36137101 | Identification of indole derivatives as self-growth inhibitors of Symbiobacterium thermophilum, a unique bacterium whose growth depends on coculture with a Bacillus sp. |
| Q36814197 | Lessons from studies of Symbiobacterium thermophilum, a unique syntrophic bacterium |
| Q33400327 | Phylogenetic and functional assessment of orthologs inference projects and methods |
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