Parallelization of the MAFFT multiple sequence alignment program

scientific article

Parallelization of the MAFFT multiple sequence alignment program is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bioinformatics/KatohT10
P356DOI10.1093/BIOINFORMATICS/BTQ224
P932PMC publication ID2905546
P698PubMed publication ID20427515
P5875ResearchGate publication ID43351565

P50authorKazutaka KatohQ30504770
P2093author name stringHiroyuki Toh
P2860cites workCLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transformQ24540347
Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignmentsQ28300424
Comprehensive study on iterative algorithms of multiple sequence alignmentQ28304171
Recent developments in the MAFFT multiple sequence alignment programQ29547333
Progressive sequence alignment as a prerequisite to correct phylogenetic treesQ29618216
BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programsQ33854471
A strategy for the rapid multiple alignment of protein sequences. Confidence levels from tertiary structure comparisonsQ34178923
Parallel BLAST on split databasesQ46312386
Parallelized multiple alignment.Q52033127
A novel randomized iterative strategy for aligning multiple protein sequences.Q52095476
Multiple alignment of sequences on parallel computers.Q52392346
Optimal alignment between groups of sequences and its application to multiple sequence alignment.Q52395684
Multiple sequence alignment by parallel simulated annealing.Q52395702
ClustalW-MPI: ClustalW analysis using distributed and parallel computingQ73796419
BAliBASE 3.0: latest developments of the multiple sequence alignment benchmarkQ80934686
P433issue15
P407language of work or nameEnglishQ1860
P921main subjectparallel computingQ232661
sequence alignmentQ827246
MAFFTQ6714151
P304page(s)1899-1900
P577publication date2010-04-28
P1433published inBioinformaticsQ4914910
P1476titleParallelization of the MAFFT multiple sequence alignment program
P478volume26

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cites work (P2860)
Q35185792A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway.
Q35531017A chloroplast genomic strategy for designing taxon specific DNA mini-barcodes: a case study on ginsengs
Q39414987A clinical approach to the threat of emerging influenza viruses in the Asia-Pacific region
Q34658284A comparison of the olfactory gene repertoires of adults and larvae in the noctuid moth Spodoptera littoralis
Q42292504A dynamic hydrophobic core orchestrates allostery in protein kinases.
Q35155043A method enabling high-throughput sequencing of human cytomegalovirus complete genomes from clinical isolates
Q31072314A new classification of viviparous brotulas (Bythitidae) - with family status for Dinematichthyidae - based on molecular, morphological and fossil data.
Q111742048A new genus and new species of potamid crab from Yunnan, southern China (Decapoda: Brachyura: Potamidae: Potamiscinae)
Q21694048A new genus of rodent from Wallacea (Rodentia: Muridae: Murinae: Rattini), and its implication for biogeography and Indo-Pacific Rattini systematics
Q35997303A new integrative framework for large-scale assessments of biodiversity and community dynamics, using littoral gastropods and crabs of British Columbia, Canada
Q48049265A novel papillomavirus isolated from proliferative skin lesions of a wild American beaver (Castor canadensis).
Q116672975A remarkable troglomorphic ant,
Q99711932A survey of RNA secondary structural propensity encoded within human herpesvirus genomes: global comparisons and local motifs
Q64109001A systematic comparison of eight new plastome sequences from L
Q93089640Adaptive Evolution of Human-Isolated H5Nx Avian Influenza A Viruses
Q21090881Algivore or phototroph? Plakobranchus ocellatus (Gastropoda) continuously acquires kleptoplasts and nutrition from multiple algal species in nature
Q34361062Alignment-free genetic sequence comparisons: a review of recent approaches by word analysis
Q91646394An Orthologue of the Retinoic Acid Receptor (RAR) Is Present in the Ecdysozoa Phylum Priapulida
Q34032956An efficient parallel algorithm for multiple sequence similarities calculation using a low complexity method
Q118162894An ultrastructural study of spore wall development and septal pores in species of the Pachyphlodes (Pezizaceae, Pezizales) lineage, with a description of the new species Pachyphlodes annagardnerae
Q30753583Analysis of EST data of the marine protist Oxyrrhis marina, an emerging model for alveolate biology and evolution
Q41106589Analysis of new isolates reveals new genome organization and a hypervariable region in infectious myonecrosis virus (IMNV).
Q34507221Analysis of pan-genome to identify the core genes and essential genes of Brucella spp.
Q34071038Analysis of the community structure of abyssal kinetoplastids revealed similar communities at larger spatial scales
Q38368307Ancient Evolution and Dispersion of Human Papillomavirus Type 58 Variants
Q42506831Ancient gene paralogy may mislead inference of plastid phylogeny.
Q46337335Antibacterial and Antioxidant Constituents of Extracts of Endophytic Fungi Isolated from Ocimum basilicum var. thyrsiflora Leaves
Q46257405Antibacterial and Antioxidant Metabolites of Diaporthe spp. Isolated from Flowers of Melodorum fruticosum
Q57042638Are generalist Aphidiinae (Hym. Braconidae) mostly cryptic species complexes?
Q30592487Assessing DNA barcoding as a tool for species identification and data quality control
Q39237225Assessing the efficiency of multiple sequence alignment programs
Q28601734Bacterial Community Diversity Harboured by Interacting Species
Q41634657Basal Gnathostomes provide unique insights into the evolution of vitamin B12 binders.
Q34269710Base-By-Base version 2: single nucleotide-level analysis of whole viral genome alignments
Q37310033BdorOBP83a-2 Mediates Responses of the Oriental Fruit Fly to Semiochemicals
Q56335154Bipolar dispersal of red-snow algae
Q31141573Blood flukes of Asiatic softshell turtles: revision of Coeuritrema Mehra, 1933 (Digenea: Schistosomatoidea) and a new species infecting Chinese softshell turtles, Pelodiscus sinensis (Trionychidae), from Vietnam
Q59351693Building (Viral) Phylogenetic Trees Using a Maximum Likelihood Approach
Q34189215Calonectria spp. causing leaf spot, crown and root rot of ornamental plants in Tunisia
Q36916230Candidate chemosensory genes in the Stemborer Sesamia nonagrioides
Q96292965Cartilaginous fishes offer unique insights into the evolution of the nuclear receptor gene repertoire in gnathostomes
Q59550196Characterization and Effectiveness of Co-inoculation of Strains on Annual Medics
Q42011635Characterization of a plasma membrane Ca(2+) ATPase expressed in olfactory receptor neurons of the moth Spodoptera littoralis
Q58764039Characterization of indels in poxvirus genomes
Q52739604Characterization of maspardin, responsible for human Mast syndrome, in an insect species and analysis of its evolution in metazoans.
Q42250881Characterization of the North American beaver (Castor canadensis) papillomavirus genome.
Q35154318Characterization of two novel gammapapillomaviruses, HPV179 and HPV184, isolated from common warts of a renal-transplant recipient
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Q40986221Diaporthe is paraphyletic
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Q110856146Diaporthosporellaceae, a novel family of Diaporthales (Sordariomycetes, Ascomycota)
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Q46255065Different diversity-dependent declines in speciation rate unbalances species richness in terrestrial slugs
Q52342572Discovery and Characterization of ZUFSP/ZUP1, a Distinct Deubiquitinase Class Important for Genome Stability.
Q35662287Discovery of Chemosensory Genes in the Oriental Fruit Fly, Bactrocera dorsalis.
Q34711995Discovery of trypanosomatid parasites in globally distributed Drosophila species
Q30676559Discriminating plants using the DNA barcode rbcLb: an appraisal based on a large data set.
Q34697766Distinct types of disorder in the human proteome: functional implications for alternative splicing
Q41774206Distinction between the Cfr methyltransferase conferring antibiotic resistance and the housekeeping RlmN methyltransferase.
Q42429738Distribution of amino acids in functional sites of proteins with high melting temperature
Q27680098Divergent evolution of protein conformational dynamics in dihydrofolate reductase
Q34454954Divergent selection for opsin gene variation in guppy (Poecilia reticulata) populations of Trinidad and Tobago
Q35065266Diversity and history of the long-chain acyl-CoA synthetase (Acsl) gene family in vertebrates
Q34260908Diversity of nitrogen-fixing bacteria associated with switchgrass in the native tallgrass prairie of northern Oklahoma
Q39554631Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
Q28817625Drivers of Cape Verde archipelagic endemism in keyhole limpets
Q92695682Entamoeba chiangraiensis n. sp. (Amoebozoa: Entamoebidae) isolated from the gut of Asian swamp eel (Monopterus albus) in northern Thailand
Q30811636Entomopathogens of Amazonian stick insects and locusts are members of the Beauveria species complex (Cordyceps sensu stricto).
Q34541937Evidence for transitional stages in the evolution of euglenid group II introns and twintrons in the Monomorphina aenigmatica plastid genome
Q34973937Evolution and taxonomic classification of alphapapillomavirus 7 complete genomes: HPV18, HPV39, HPV45, HPV59, HPV68 and HPV70.
Q21135368Evolution and taxonomic classification of human papillomavirus 16 (HPV16)-related variant genomes: HPV31, HPV33, HPV35, HPV52, HPV58 and HPV67
Q35224590Evolution at a different pace: distinctive phylogenetic patterns of cone snails from two ancient oceanic archipelagos
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Q41992246Evolution of conjugation and type IV secretion systems
Q64958249Evolutionary Plasticity in Detoxification Gene Modules: The Preservation and Loss of the Pregnane X Receptor in Chondrichthyes Lineages.
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Q92033424Evolutionary patterns of plastome uncover diploid-polyploid maternal relationships in Triticeae
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Q36143956Exclusion of the 750-kb genetically unstable region at Xq27 as a candidate locus for prostate malignancy in HPCX1-linked families.
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Q36097707First genome analysis and molecular characterization of Chickpea chlorotic dwarf virus Egyptian isolate infecting squash
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Q30574992Fungal trunk pathogens associated with wood decay of almond trees on Mallorca (Spain).
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Q48232714Genetic diversity of Blastocystis in non-primate animals.
Q36167852Genome-Wide Analysis, Classification, Evolution, and Expression Analysis of the Cytochrome P450 93 Family in Land Plants
Q34685712Genome-wide analysis of the expansin gene superfamily reveals grapevine-specific structural and functional characteristics
Q34366243Genome-wide analysis of the grapevine stilbene synthase multigenic family: genomic organization and expression profiles upon biotic and abiotic stresses.
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Q37592805Genome-wide identification, characterisation and expression profiles of calcium-dependent protein kinase genes in barley (Hordeum vulgare L.).
Q37069804Global Genomic Diversity of Human Papillomavirus 11 Based on 433 Isolates and 78 Complete Genome Sequences
Q33744003Global genomic diversity of human papillomavirus 6 based on 724 isolates and 190 complete genome sequences
Q35764054Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding
Q35134198Gluten quality of bread wheat is associated with activity of RabD GTPases
Q35582579Glycans flanking the hypervariable connecting peptide between the A and B strands of the V1/V2 domain of HIV-1 gp120 confer resistance to antibodies that neutralize CRF01_AE viruses
Q36440407Haplotype Detection from Next-Generation Sequencing in High-Ploidy-Level Species: 45S rDNA Gene Copies in the Hexaploid Spartina maritima
Q36522616Heuristic methods for finding pathogenic variants in gene coding sequences
Q45395512High diversity and widespread occurrence of mitotic spore mats in ectomycorrhizal Pezizales
Q57074512High diversity of Diaporthe species associated with dieback diseases in China, with twelve new species described
Q57026825High diversity of thermophilic cyanobacteria in Rupite hot spring identified by microscopy, cultivation, single-cell PCR and amplicon sequencing
Q99852521High levels of endemism among Galapagos basidiolichens
Q33830609Human papillomavirus 16 non-European variants are preferentially associated with high-grade cervical lesions
Q34414886Identification of Acorus gramineus, A. calamus, and A. tatarinowii using sequence characterized amplified regions (SCAR) primers for monitoring of Acori graminei rhizoma in Korean markets.
Q38699047Identification of Protein Secretion Systems in Bacterial Genomes Using MacSyFinder
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Q48257012Impact of light intensity and quality on chromatophore and nuclear gene expression in Paulinella chromatophora, an amoeba with nascent photosynthetic organelles
Q35207778In silico single strand melting curve: a new approach to identify nucleic acid polymorphisms in Totiviridae
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Q24607812MUSI: an integrated system for identifying multiple specificity from very large peptide or nucleic acid data sets
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Q36431618Molecular Evolution of Slow and Quick Anion Channels (SLACs and QUACs/ALMTs).
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Q54223789Stability of the HTLV-1 glycoprotein 46 (gp46) gene in an endemic region of the Brazilian Amazon and the presence of a significant mutation (N93D) in symptomatic patients.
Q30002371Standardized benchmarking in the quest for orthologs
Q27676094Structural and functional analysis of the archaeal endonuclease Nob1.
Q27001110Structure-based Methods for Computational Protein Functional Site Prediction
Q98612986Systematics of Pholidobolus lizards (Squamata, Gymnophthalmidae) from southern Ecuador, with descriptions of four new species
Q92000769T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees
Q39076897T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life
Q28829986TRPA5, an Ankyrin Subfamily Insect TRP Channel, is Expressed in Antennae of Cydia pomonella (Lepidoptera: Tortricidae) in Multiple Splice Variants
Q35156483Taxonomy and phylogeny of European Gymnopus subsection Levipedes (Basidiomycota, Omphalotaceae)
Q87012922Taxonomy of two synnematal fungal species from Rhus chinensis, with Flavignomonia gen. nov. described
Q27678118The 3.2 Å Resolution Structure of a Receptor:CheA:CheW Signaling Complex Defines Overlapping Binding Sites and Key Residue Interactions within Bacterial Chemosensory Arrays
Q35035165The Colletotrichum gigasporum species complex
Q36685843The Complete Chloroplast Genome Sequences of Five Epimedium Species: Lights into Phylogenetic and Taxonomic Analyses
Q47241319The Great American Biotic Interchange in frogs: multiple and early colonization of Central America by the South American genus Pristimantis (Anura: Craugastoridae).
Q50318000The Hemiparasitic Plant Phtheirospermum (Orobanchaceae) Is Polyphyletic and Contains Cryptic Species in the Hengduan Mountains of Southwest China.
Q36491346The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy
Q36719893The chemosensory receptors of codling moth Cydia pomonella-expression in larvae and adults
Q34954279The complete chloroplast genome provides insight into the evolution and polymorphism of Panax ginseng
Q34388083The complete genome sequence of Natrinema sp. J7-2, a haloarchaeon capable of growth on synthetic media without amino acid supplements
Q28651512The evolutionary fate of the horizontally transferred agrobacterial mikimopine synthase gene in the genera Nicotiana and Linaria
Q44976660The folding capacity of the mature domain of the dual-targeted plant tRNA nucleotidyltransferase influences organelle selection
Q37253161The genome of Pseudomonas fluorescens strain R124 demonstrates phenotypic adaptation to the mineral environment
Q47142468The genomic study of an environmental isolate of Scedosporium apiospermum shows its metabolic potential to degrade hydrocarbons.
Q30587390The genus Meira: phylogenetic placement and description of a new species
Q39237015The life and adventures of an eight-legged castaway: Colonization and diversification of Philisca ghost spiders on Robinson Crusoe Island (Araneae, Anyphaenidae).
Q42097259The nature of mutations induced by replication–transcription collisions.
Q39127577The nitrogen cycle in cryoconites: naturally occurring nitrification-denitrification granules on a glacier.
Q34657459The rare terrestrial orchid Nervilia nipponica consistently associates with a single group of novel mycobionts
Q34084950The reduced kinome of Ostreococcus tauri: core eukaryotic signalling components in a tractable model species
Q35015143The taxonomy and phylogeny of Echinometra (Camarodonta: Echinometridae) from the red sea and western Indian Ocean
Q39679928The timing and the mode of evolution of wild grapes (Vitis).
Q38065938Themes and variations in ER/SR calcium release channels: structure and function
Q95269045Three new Diaporthe species from Shaanxi Province, China
Q98778755Three new Scheffersomyces species associated with insects and rotting wood in China
Q28821437Tissue, developmental, and caste-specific expression of odorant binding proteins in a eusocial insect, the red imported fire ant, Solenopsis invicta
Q28828633Towards a DNA Barcode Reference Database for Spiders and Harvestmen of Germany
Q64899390Transcriptome Analysis of Gene Families Involved in Chemosensory Function in Spodoptera littoralis (Lepidoptera: Noctuidae).
Q36106698Transcriptome analysis of hormone-induced gene expression in Brachypodium distachyon
Q98177320Tree inhabiting gnomoniaceous species from China, with Cryphogonomonia gen. nov. proposed
Q58115737Turnover of southern cypresses in the post-Gondwanan world: extinction, transoceanic dispersal, adaptation and rediversification
Q60930353Two more Posterior Hox genes and Hox cluster dispersal in echinoderms
Q57479870Unicellular Origin of the Animal MicroRNA Machinery
Q99404902Unraveling the Spiraling Radiation: A Phylogenomic Analysis of Neotropical Costus L
Q28388198Veillonella, Firmicutes: Microbes disguised as Gram negatives
Q30426340Whole exome sequencing identifies a mutation for a novel form of corneal intraepithelial dyskeratosis
Q21135292Why does the giant panda eat bamboo? A comparative analysis of appetite-reward-related genes among mammals
Q28654603Wider sampling reveals a non-sister relationship for geographically contiguous lineages of a marine mussel
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Q41381769Winter diversity and expression of proteorhodopsin genes in a polar ocean
Q39142230World-wide species distributions in the family Kyphosidae (Teleostei: Perciformes).
Q34376721Yeast communities of diverse Drosophila species: comparison of two symbiont groups in the same hosts
Q33611499Zearalenone lactonohydrolase activity in Hypocreales and its evolutionary relationships within the epoxide hydrolase subset of a/b-hydrolases
Q111741658‘Candidatus Mellornella promiscua’ n. gen. n. sp. (Alphaproteobacteria: Rickettsiales: Anaplasmataceae): An intracytoplasmic, hepatopancreatic, pathogen of the flatback mud crab, Eurypanopeus depressus
Q110694351Achnanthidium gladius sp. nov. (Bacillariophyceae) – a new monoraphid diatom species from Indonesia
Q111741054Three new species of Candolleomyces (Agaricomycetes, Agaricales, Psathyrellaceae) from the Yanshan Mountains in China
Q110951557Thyridium revised: Synonymisation of Phialemoniopsis under Thyridium and establishment of a new order, Thyridiales

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