Binary classification of protein molecules into intrinsically disordered and ordered segments

scientific article

Binary classification of protein molecules into intrinsically disordered and ordered segments is …
instance of (P31):
scholarly articleQ13442814

External links are
P6179Dimensions Publication ID1007812531
P356DOI10.1186/1472-6807-11-29
P8608Fatcat IDrelease_2zg5ewkpp5emtde25p2ahnarga
P932PMC publication ID3199747
P698PubMed publication ID21693062
P5875ResearchGate publication ID51238251

P50authorTakashi GojoboriQ532387
P2093author name stringSatoshi Fukuchi
Keiichi Homma
Ken Nishikawa
Kazuo Hosoda
P2860cites workThe genome sequence of Schizosaccharomyces pombeQ21972841
Intrinsically unstructured proteins and their functionsQ22061731
Prediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of LifeQ22061741
Visualization of Intrinsically Disordered Regions of Proteins by High-Speed Atomic Force MicroscopyQ22061752
The complete genome sequence of the gram-positive bacterium Bacillus subtilisQ22122360
Analysis of the genome sequence of the flowering plant Arabidopsis thalianaQ22122387
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequencesQ24548064
Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organismsQ24548466
The Pfam protein families databaseQ24644670
On the origin of mitochondria: a genomics perspectiveQ24675868
Solution structure of the transactivation domain of ATF-2 comprising a zinc finger-like subdomain and a flexible subdomainQ27617761
Structure of the negative regulatory domain of p53 bound to S100B(betabeta)Q27625154
Genome sequence of the nematode C. elegans: a platform for investigating biologyQ27860527
The complete genome sequence of Escherichia coli K-12Q27860542
The genome sequence of Drosophila melanogasterQ27860796
Life with 6000 genesQ27860877
Intrinsic disorder in cell-signaling and cancer-associated proteinsQ28207698
Protein superfamilies and domain superfoldsQ28242652
One thousand families for the molecular biologistQ28266140
Alternative splice variants encoding unstable protein domains exist in the human brainQ28288473
The Universal Protein Resource (UniProt) in 2010Q28749229
The importance of intrinsic disorder for protein phosphorylationQ28776125
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structureQ29547343
Protein disorder prediction: implications for structural proteomicsQ29615736
Why are "natively unfolded" proteins unstructured under physiologic conditions?Q29615739
Intrinsically unstructured proteins: re-assessing the protein structure-function paradigmQ29615865
Sequence complexity of disordered proteinQ29616420
Data growth and its impact on the SCOP database: new developmentsQ29619285
MultiCoil: a program for predicting two- and three-stranded coiled coilsQ29619769
The interplay between structure and function in intrinsically unstructured proteins.Q30350853
Alternative splicing in human transcriptome: functional and structural influence on proteins.Q30355956
Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions.Q30360720
The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions.Q30373133
Understanding protein non-folding.Q30385084
The N-terminal domain of p53 is natively unfolded.Q30879982
Development of an accurate classification system of proteins into structured and unstructured regions that uncovers novel structural domains: its application to human transcription factorsQ33436460
Stochastic noise in splicing machineryQ33471943
Use of a mutant cell line to study the kinetics and function of O-linked glycosylation of low density lipoprotein receptorsQ33581525
The SUPERFAMILY database in 2007: families and functionsQ34000850
p53 contains large unstructured regions in its native stateQ34153187
Computational prediction of O-linked glycosylation sites that preferentially map on intrinsically disordered regions of extracellular proteinsQ35002236
PEDANT genome database: 10 years onlineQ35567938
Assessing protein disorder and induced foldingQ36312787
The Rice Annotation Project Database (RAP-DB): 2008 updateQ36454217
Conservation of intrinsic disorder in protein domains and families: II. functions of conserved disorderQ36869604
Structural implication of splicing stochasticsQ37298563
Elimination of the O-linked glycosylation site at Thr 104 results in the generation of a soluble human-transferrin receptor.Q38312020
Prevalent structural disorder in E. coli and S. cerevisiae proteomes.Q38517953
Natively unfolded proteins: An overviewQ39011544
The dual origin of the yeast mitochondrial proteomeQ39802399
Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regionsQ41851853
POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions.Q45965349
Flavors of protein disorderQ47700031
Induced alpha-helix structure in AF1 of the androgen receptor upon binding transcription factor TFIIF.Q47947792
Exhaustive enumeration of protein domain familiesQ47961009
Prediction of disordered regions in proteins based on the meta approachQ48347994
Close encounters of the third kind: disordered domains and the interactions of proteins.Q51787403
Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies.Q52378528
Intrinsically disordered regions of human plasma membrane proteins preferentially occur in the cytoplasmic segment.Q54445028
Local Structural Elements in the Mostly Unstructured Transcriptional Activation Domain of Human p53Q57650265
Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulationQ64111661
Intrinsic protein disorder in complete genomesQ77145749
POODLE-S: web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific scoring matrixQ80545079
P921main subjectbinary classificationQ17005494
P304page(s)29
P577publication date2011-06-22
P1433published inBMC Structural BiologyQ2708987
P1476titleBinary classification of protein molecules into intrinsically disordered and ordered segments
P478volume11

Reverse relations

cites work (P2860)
Q61798584A new technique for predicting intrinsically disordered regions based on average distance map constructed with inter-residue average distance statistics
Q26796304A practical guide to small angle X-ray scattering (SAXS) of flexible and intrinsically disordered proteins
Q30402024A review of multi-domain and flexible molecular chaperones studies by small-angle X-ray scattering
Q26783068An Overview of Predictors for Intrinsically Disordered Proteins over 2010-2014
Q36487839An assignment of intrinsically disordered regions of proteins based on NMR structures
Q36272458Architectural plasticity of human BRCA2-RAD51 complexes in DNA break repair.
Q42357193Assessment of virulence potential of uncharacterized Enterococcus faecalis strains using pan genomic approach - Identification of pathogen-specific and habitat-specific genes
Q30379344Back to the Future: Nuclear Magnetic Resonance and Bioinformatics Studies on Intrinsically Disordered Proteins.
Q35034116Comprehensive repertoire of foldable regions within whole genomes
Q39356263Comprehensive review of methods for prediction of intrinsic disorder and its molecular functions
Q34390409Conserved RNA helicase FRH acts nonenzymatically to support the intrinsically disordered neurospora clock protein FRQ.
Q38688952Correlations between predicted protein disorder and post-translational modifications in plants
Q30870411Denatured mammalian protein mixtures exhibit unusually high solubility in nucleic acid-free pure water
Q47701746Discovery of Cryoprotective Activity in Human Genome-Derived Intrinsically Disordered Proteins
Q36230625Discovery of short linear motif-mediated interactions through phage display of intrinsically disordered regions of the human proteome
Q35938545Dynamic Protein Interaction Networks and New Structural Paradigms in Signaling
Q34314929D²P²: database of disordered protein predictions
Q64060780Functional Segments on Intrinsically Disordered Regions in Disease-Related Proteins
Q33753946High-throughput SAXS for the characterization of biomolecules in solution: a practical approach
Q38944980How disordered is my protein and what is its disorder for? A guide through the "dark side" of the protein universe
Q38494386IDEAL in 2014 illustrates interaction networks composed of intrinsically disordered proteins and their binding partners
Q38426249IDEAL: Intrinsically Disordered proteins with Extensive Annotations and Literature
Q38434650Identification of protein features encoded by alternative exons using Exon Ontology.
Q41880304In Silico Analysis of Correlations between Protein Disorder and Post-Translational Modifications in Algae.
Q38044411Intrinsically disordered proteins: administration not executive.
Q48251022Large-scale aggregation analysis of eukaryotic proteins reveals an involvement of intrinsically disordered regions in protein folding
Q34445775MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins
Q38077753Multifarious roles of intrinsic disorder in proteins illustrate its broad impact on plant biology
Q36048325Multiple-Localization and Hub Proteins
Q42010431Phosphoproteomic analysis reveals major default phosphorylation sites outside long intrinsically disordered regions of Arabidopsis plasma membrane proteins.
Q36824214Phosphorylated and unphosphorylated serine 13 of CDC37 stabilize distinct interactions between its client and HSP90 binding domains
Q27930355Phosphorylation of Elp1 by Hrr25 is required for elongator-dependent tRNA modification in yeast.
Q30392495Resonance assignment of disordered protein with repetitive and overlapping sequence using combinatorial approach reveals initial structural propensities and local restrictions in the denatured state.
Q92675877TET2 missense variants in human neoplasia. A proposal of structural and functional classification
Q38845618The yeast Hsp70 homolog Ssb: a chaperone for general de novo protein folding and a nanny for specific intrinsically disordered protein domains

Search more.