An integrated genomic and metabolomic framework for cell wall biology in rice

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An integrated genomic and metabolomic framework for cell wall biology in rice is …
instance of (P31):
scholarly articleQ13442814

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P6179Dimensions Publication ID1028945029
P356DOI10.1186/1471-2164-15-596
P932PMC publication ID4112216
P698PubMed publication ID25023612
P5875ResearchGate publication ID263935141

P50authorStaffan PerssonQ40038317
P2093author name stringJing Zhang
Kai Guo
Liangcai Peng
Lingqiang Wang
Mingliang Zhang
Weihua Zou
Sebastian Klie
Guosheng Xie
Yongqing Feng
Fen Tu
Yangting Wang
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Arabidopsis Family GT43 Members are Xylan Xylosyltransferases Required for the Elongation of the Xylan BackboneQ34073672
SND2, a NAC transcription factor gene, regulates genes involved in secondary cell wall development in Arabidopsis fibres and increases fibre cell area in Eucalyptus.Q34088625
Sitosterol-β-glucoside as Primer for Cellulose Synthesis in PlantsQ34107984
Global Identification of Multiple OsGH9 Family Members and Their Involvement in Cellulose Crystallinity Modification in RiceQ34544452
Enrichment or depletion of a GO category within a class of genes: which test?Q34593379
MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisQ34914934
Toward a systems approach to understanding plant cell wallsQ35993311
Hemicelluloses negatively affect lignocellulose crystallinity for high biomass digestibility under NaOH and H2SO4 pretreatments in MiscanthusQ36290947
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Rice Brittleness Mutants: A Way to Open the ‘Black Box’ of Monocot Cell Wall BiosynthesisFree AccessQ37825974
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Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networksQ38510491
Large-scale co-expression approach to dissect secondary cell wall formation across plant speciesQ41965297
Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysisQ42552788
The association of multiple interacting genes with specific phenotypes in rice using gene coexpression networksQ42953371
Cloning and characterization of irregular xylem4 (irx4): a severely lignin-deficient mutant of ArabidopsisQ43628367
Arabidopsis genes IRREGULAR XYLEM (IRX15) and IRX15L encode DUF579-containing proteins that are essential for normal xylan deposition in the secondary cell wallQ44002440
AtMYB61, an R2R3-MYB transcription factor, functions as a pleiotropic regulator via a small gene networkQ44039529
A missense mutation in the transmembrane domain of CESA4 affects protein abundance in the plasma membrane and results in abnormal cell wall biosynthesis in riceQ44216135
Arabinose substitution degree in xylan positively affects lignocellulose enzymatic digestibility after various NaOH/H2SO4 pretreatments in MiscanthusQ45192901
BC10, a DUF266-containing and Golgi-located type II membrane protein, is required for cell-wall biosynthesis in rice (Oryza sativa L.).Q45349566
TheArabidopsisNAC Transcription Factor VNI2 Integrates Abscisic Acid Signals into Leaf Senescence via theCOR/RDGenesQ45757990
An integrative analysis of four CESA isoforms specific for fiber cellulose production between Gossypium hirsutum and Gossypium barbadenseQ45790189
Comparison of five xylan synthesis mutants reveals new insight into the mechanisms of xylan synthesisQ46943541
Molecular Analysis of Cellulose Biosynthesis in ArabidopsisQ48040253
BRITTLE CULM1, which encodes a COBRA-like protein, affects the mechanical properties of rice plantsQ48230024
A kinesin-like protein is essential for oriented deposition of cellulose microfibrils and cell wall strengthQ48270378
A katanin-like protein regulates normal cell wall biosynthesis and cell elongationQ48372257
Identification of transcription factors involved in rice secondary cell wall formationQ50471736
Arabidopsis MYB26/MALE STERILE35 regulates secondary thickening in the endothecium and is essential for anther dehiscenceQ51764288
A dynamic gene expression atlas covering the entire life cycle of riceQ51920590
Transcriptional coordination of the metabolic network in ArabidopsisQ51934868
A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in ArabidopsisQ51947460
Collapsed xylem phenotype of Arabidopsis identifies mutants deficient in cellulose deposition in the secondary cell wallQ73371561
Multiple cellulose synthase catalytic subunits are required for cellulose synthesis in ArabidopsisQ73371641
Fractionation of carbohydrates in Arabidopsis root cell walls shows that three radial swelling loci are specifically involved in cellulose productionQ74315410
Molecular biology of the plant cell wall: searching for the genes that define structure, architecture and dynamicsQ74506437
Characterization of IRX10 and IRX10-like reveals an essential role in glucuronoxylan biosynthesis in ArabidopsisQ79778417
Fine mapping and isolation of Bc7(t), allelic to OsCesA4Q79960481
Identification of novel genes in Arabidopsis involved in secondary cell wall formation using expression profiling and reverse geneticsQ81890940
Gene coexpression network alignment and conservation of gene modules between two grass species: maize and riceQ84179075
Global Analysis of Direct Targets of Secondary Wall NAC Master Switches in ArabidopsisQ85175997
Analysis of five rice 4-coumarate:coenzyme A ligase enzyme activity and stress response for potential roles in lignin and flavonoid biosynthesis in riceQ85711117
Three lignocellulose features that distinctively affect biomass enzymatic digestibility under NaOH and H2SO4 pretreatments in MiscanthusQ95484045
P4510describes a project that usesWGCNAQ102537983
P407language of work or nameEnglishQ1860
P921main subjectcell wallQ128700
P304page(s)596
P577publication date2014-07-15
P1433published inBMC GenomicsQ15765854
P1476titleAn integrated genomic and metabolomic framework for cell wall biology in rice
P478volume15

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cites work (P2860)
Q37270798A Novel FC116/BC10 Mutation Distinctively Causes Alteration in the Expression of the Genes for Cell Wall Polymer Synthesis in Rice
Q47152777A precise and consistent assay for major wall polymer features that distinctively determine biomass saccharification in transgenic rice by near-infrared spectroscopy
Q36012139An Integrated Bioinformatics Analysis Reveals Divergent Evolutionary Pattern of Oil Biosynthesis in High- and Low-Oil Plants
Q49667568AtCSLD3 and GhCSLD3 mediate root growth and cell elongation downstream of the ethylene response pathway in Arabidopsis
Q46361926Cell Wall Composition and Candidate Biosynthesis Gene Expression During Rice Development
Q37729276CmMYB19 Over-Expression Improves Aphid Tolerance in Chrysanthemum by Promoting Lignin Synthesis
Q40977762Evolution, gene expression profiling and 3D modeling of CSLD proteins in cotton
Q46811186High-level hemicellulosic arabinose predominately affects lignocellulose crystallinity for genetically enhancing both plant lodging resistance and biomass enzymatic digestibility in rice mutants
Q47770158Processes Underlying a Reproductive Barrier in indica-japonica Rice Hybrids Revealed by Transcriptome Analysis

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