Advances in flux balance analysis

scientific article

Advances in flux balance analysis is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.COPBIO.2003.08.001
P698PubMed publication ID14580578
P5875ResearchGate publication ID9037847

P2093author name stringJeremy S Edwards
Kenneth J Kauffman
Purusharth Prakash
P433issue5
P304page(s)491-496
P577publication date2003-10-01
P1433published inCurrent Opinion in BiotechnologyQ15763085
P1476titleAdvances in flux balance analysis
P478volume14

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cites work (P2860)
Q47259732A Comprehensive Overview of Online Resources to Identify and Predict Bacterial Essential Genes.
Q28480577A Scalable Algorithm to Explore the Gibbs Energy Landscape of Genome-Scale Metabolic Networks
Q38372136A comprehensive metabolic profile of cultured astrocytes using isotopic transient metabolic flux analysis and C-labeled glucose
Q34050854A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communities
Q51626517A computational tool for the simulation and optimization of microbial strains accounting integrated metabolic/regulatory information
Q37147567A critical examination of stoichiometric and path-finding approaches to metabolic pathways.
Q48165621A flexible state-space approach for the modeling of metabolic networks II: advanced interrogation of hybridoma metabolism.
Q42801030A genome-scale computational study of the interplay between transcriptional regulation and metabolism
Q43276356A genome-scale metabolic model of Arabidopsis and some of its properties
Q45734016A hybrid of bees algorithm and flux balance analysis with OptKnock as a platform for in silico optimization of microbial strains
Q44785253A latent capacity for evolutionary innovation through exaptation in metabolic systems
Q34669495A metabolite-centric view on flux distributions in genome-scale metabolic models
Q33233350A methodology for the structural and functional analysis of signaling and regulatory networks
Q36649443A model of flux regulation in the cholesterol biosynthesis pathway: Immune mediated graduated flux reduction versus statin-like led stepped flux reduction
Q33917561A novel deconvolution method for modeling UDP-N-acetyl-D-glucosamine biosynthetic pathways based on (13)C mass isotopologue profiles under non-steady-state conditions
Q41889906A novel methodology to estimate metabolic flux distributions in constraint-based models
Q33489026A possibilistic framework for constraint-based metabolic flux analysis
Q33304395A procedure for the estimation over time of metabolic fluxes in scenarios where measurements are uncertain and/or insufficient
Q46639244A reliable simulator for dynamic flux balance analysis
Q28085616A review on computational systems biology of pathogen-host interactions
Q46469402A systems biology approach reveals major metabolic changes in the thermoacidophilic archaeon Sulfolobus solfataricus in response to the carbon source L-fucose versus D-glucose.
Q39632071AMIGO2, a toolbox for dynamic modeling, optimization and control in systems biology.
Q35178614Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology
Q33598552Achieving optimal growth through product feedback inhibition in metabolism
Q24644624Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network
Q37825464Adaptation of cells to new environments
Q36790849Advanced Stoichiometric Analysis of Metabolic Networks of Mammalian Systems
Q51897409Algebraic method for the analysis of signaling crosstalk.
Q86935153Alterations in cancer cell metabolism: the Warburg effect and metabolic adaptation
Q42194199An analytic approximation of the feasible space of metabolic networks
Q27011589An ensemble approach to the study of the emergence of metabolic and proliferative disorders via Flux Balance Analysis
Q34266500An in silico platform for the design of heterologous pathways in nonnative metabolite production
Q33846592Analog regulation of metabolic demand
Q33922321Analysis of complex metabolic behavior through pathway decomposition
Q42876399Analysis of genetic systems using experimental evolution and whole-genome sequencing
Q35539111Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactions
Q38017425Are we ready for genome-scale modeling in plants?
Q46835359Autocatalysis in reaction networks
Q37210494Bacillus cereus cell response upon exposure to acid environment: toward the identification of potential biomarkers
Q37892104Bacterial growth rate reflects a bottleneck in resource allocation
Q39776363Bayesian flux balance analysis applied to a skeletal muscle metabolic model.
Q57014364Bioinformatics for Metabolomics
Q38695026Biomass composition: the "elephant in the room" of metabolic modelling
Q28472546Biosynthetic potentials of metabolites and their hierarchical organization
Q39667259Can single knockouts accurately single out gene functions?
Q41898164Cellular automata simulation of topological effects on the dynamics of feed-forward motifs
Q53849247Characteristics of oxygen transport through the surface of the isolated perfused rat liver
Q43234569Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling
Q36389972Clostridium butyricum maximizes growth while minimizing enzyme usage and ATP production: metabolic flux distribution of a strain cultured in glycerol
Q33752043Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast
Q37788044Comparative systems biology: from bacteria to man
Q38232030Comparison and analysis of objective functions in flux balance analysis
Q28476801Computational Design of Auxotrophy-Dependent Microbial Biosensors for Combinatorial Metabolic Engineering Experiments
Q46081774Computational Prediction of Synthetic Lethals in Genome-Scale Metabolic Models Using Fast-SL.
Q83892638Computational analysis of storage synthesis in developing Brassica napus L. (oilseed rape) embryos: flux variability analysis in relation to 13C metabolic flux analysis
Q37643587Computational approaches to metabolomics
Q50785137Computational design of reduced metabolic networks
Q38088344Computational systems approach for drug target discovery
Q35077643Computing smallest intervention strategies for multiple metabolic networks in a boolean model
Q33255328Conservation of expression and sequence of metabolic genes is reflected by activity across metabolic states
Q41994185Conservation of high-flux backbone in alternate optimal and near-optimal flux distributions of metabolic networks
Q26767203Constraint Based Modeling Going Multicellular
Q33892119Creating views on integrated multidomain data
Q34649443Current progress in computational metabolomics
Q55361965DMPy: a Python package for automated mathematical model construction of large-scale metabolic systems.
Q91657188Deciphering the metabolic capabilities of Bifidobacteria using genome-scale metabolic models
Q28480927Design Constraints on a Synthetic Metabolism
Q33623803Detection of driver metabolites in the human liver metabolic network using structural controllability analysis.
Q36180286Detection of transcriptional triggers in the dynamics of microbial growth: application to the respiratorily versatile bacterium Shewanella oneidensis.
Q51363163Development of Constraint-Based System-Level Models of Microbial Metabolism
Q57070877Development of a metabolic network dynamic model to describe distinct phenotypes occurring at different CO levels
Q35101933Discovery of metabolite biomarkers: flux analysis and reaction-reaction network approach
Q36856695Dissecting the energy metabolism in Mycoplasma pneumoniae through genome-scale metabolic modeling
Q37227773Distinct metabolic network states manifest in the gene expression profiles of pediatric inflammatory bowel disease patients and controls
Q39864171Diversity of flux distribution in central carbon metabolism of S. cerevisiae strains from diverse environments
Q30441717Dynamic analysis of integrated signaling, metabolic, and regulatory networks
Q35193508Dynamic analysis of optimality in myocardial energy metabolism under normal and ischemic conditions
Q44691249Dynamic flux balance analysis of batch fermentation: effect of genetic manipulations on ethanol production
Q47890139Dynamic flux balance analysis with nonlinear objective function.
Q34322637Dynamic optimization of distributed biological systems using robust and efficient numerical techniques.
Q31117108Effect of amino acid supplementation on titer and glycosylation distribution in hybridoma cell cultures-Systems biology-based interpretation using genome-scale metabolic flux balance model and multivariate data analysis
Q38053353Elementary Mode Analysis: A Useful Metabolic Pathway Analysis Tool for Reprograming Microbial Metabolic Pathways
Q37328003Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism
Q34001801Environmental versatility promotes modularity in genome-scale metabolic networks
Q21563487Environments that induce synthetic microbial ecosystems
Q39343644Essential gene identification and drug target prioritization in Leishmania species
Q30572301Evaluation of a Genome-Scale In Silico Metabolic Model for Geobacter metallireducens by Using Proteomic Data from a Field Biostimulation Experiment
Q49996785Evaluation of reaction gap-filling accuracy by randomization
Q25257616Evolutionary programming as a platform for in silico metabolic engineering
Q36217271Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single- and double-deletion mutants
Q33905999Expanding a dynamic flux balance model of yeast fermentation to genome-scale
Q46697439Expanding metabolic networks: scopes of compounds, robustness, and evolution
Q28595488Exploring Hydrogenotrophic Methanogenesis: a Genome Scale Metabolic Reconstruction of Methanococcus maripaludis
Q37585376Exploring metabolism flexibility in complex organisms through quantitative study of precursor sets for system outputs.
Q35772978Exploring the Altered Dynamics of Mammalian Central Carbon Metabolic Pathway in Cancer Cells: A Classical Control Theoretic Approach.
Q34242017F2C2: a fast tool for the computation of flux coupling in genome-scale metabolic networks
Q28250831FBA-SimVis: interactive visualization of constraint-based metabolic models
Q47836918FOCuS: a metaheuristic algorithm for computing knockouts from genome-scale models for strain optimization.
Q40825327Fast-SL: an efficient algorithm to identify synthetic lethal sets in metabolic networks
Q42801045Flexibility in energy metabolism supports hypoxia tolerance in Drosophila flight muscle: metabolomic and computational systems analysis
Q42015891Flux Balance Analysis of Plant Metabolism: The Effect of Biomass Composition and Model Structure on Model Predictions
Q41018622Flux balance analysis accounting for metabolite dilution
Q43740877Flux balance analysis of biological systems: applications and challenges.
Q46639912Flux balance analysis of genome-scale metabolic model of rice (Oryza sativa): aiming to increase biomass
Q21145695Flux balance analysis of mycolic acid pathway: targets for anti-tubercular drugs
Q91361831FlySilico: Flux balance modeling of Drosophila larval growth and resource allocation
Q37014464From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model
Q28748223Further developments towards a genome-scale metabolic model of yeast
Q52716933Genetic and metabolic determinants of nutritional phenotype in an insect-bacterial symbiosis.
Q51144963Genome-Scale, Constraint-Based Modeling of Nitrogen Oxide Fluxes during Coculture of Nitrosomonas europaea and Nitrobacter winogradskyi
Q38082903Genome-scale bacterial transcriptional regulatory networks: reconstruction and integrated analysis with metabolic models
Q39968205Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states.
Q38711911Genome-scale metabolic models applied to human health and disease
Q29616789Genome-scale models of microbial cells: evaluating the consequences of constraints
Q28483197Genome-scale reconstruction and analysis of the metabolic network in the hyperthermophilic archaeon Sulfolobus solfataricus
Q33543376Genotype networks in metabolic reaction spaces
Q33840085Genotype networks, innovation, and robustness in sulfur metabolism
Q28661826Glucose metabolic flux distribution of Lactobacillus amylophilus during lactic acid production using kitchen waste saccharified solution
Q38679523Green pathways: Metabolic network analysis of plant systems
Q56913722Highlighting Metabolic Strategies Using Network Analysis over Strain Optimization Results
Q33615814Historical contingency and the gradual evolution of metabolic properties in central carbon and genome-scale metabolisms
Q33830114Hybrid metabolic flux analysis: combining stoichiometric and statistical constraints to model the formation of complex recombinant products
Q34128125Hydrogen production by hyperthermophilic and extremely thermophilic bacteria and archaea: mechanisms for reductant disposal
Q28469016Identification of genome-scale metabolic network models using experimentally measured flux profiles
Q38771023Identification of metabolic pathways using pathfinding approaches: a systematic review
Q28474725Identification of potential pathway mediation targets in Toll-like receptor signaling
Q37085720Identifying essential genes in Escherichia coli from a metabolic optimization principle
Q97519228Impact of Facultative Bacteria on the Metabolic Function of an Obligate Insect-Bacterial Symbiosis
Q33739810Improved network performance via antagonism: From synthetic rescues to multi-drug combinations
Q34309177Improving metabolic flux predictions using absolute gene expression data
Q28083571In Silico Constraint-Based Strain Optimization Methods: the Quest for Optimal Cell Factories
Q33517877In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study.
Q51141733In silico metabolic engineering of Clostridium ljungdahlii for synthesis gas fermentation
Q39568172In vivo and in silico determination of essential genes of Campylobacter jejuni.
Q42561184Increased malonyl coenzyme A biosynthesis by tuning the Escherichia coli metabolic network and its application to flavanone production
Q42586483Insight into metabolic pathways of the potential biofuel producer, Paenibacillus polymyxa ICGEB2008.
Q24795542Integrated analysis of metabolic phenotypes in Saccharomyces cerevisiae
Q34591168Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae
Q30480219Integrated network reconstruction, visualization and analysis using YANAsquare.
Q39866153Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model
Q34226005Integrating tracer-based metabolomics data and metabolic fluxes in a linear fashion via Elementary Carbon Modes.
Q30425389Integration of expression data in genome-scale metabolic network reconstructions
Q31160837Integration of metabolic modeling and phenotypic data in evaluation and improvement of ethanol production using respiration-deficient mutants of Saccharomyces cerevisiae.
Q31064013Integration of metabolome data with metabolic networks reveals reporter reactions
Q91773508Integration of probabilistic regulatory networks into constraint-based models of metabolism with applications to Alzheimer's disease
Q64101711Integration of transcriptomic data in a genome-scale metabolic model to investigate the link between obesity and breast cancer
Q38847271Kinetically accessible yield (KAY) for redirection of metabolism to produce exo-metabolites
Q49135160Law of Localization in Chemical Reaction Networks
Q34233855Making the right connections: biological networks in the light of evolution
Q33818583Mass conservation and inference of metabolic networks from high-throughput mass spectrometry data
Q39840970Mathematical modeling of monolignol biosynthesis in Populus xylem
Q37768672Mathematical modeling: bridging the gap between concept and realization in synthetic biology
Q39140219Mathematical modelling of clostridial acetone-butanol-ethanol fermentation
Q38448975Mathematical modelling of metabolic regulation in aging
Q28541647MediaDB: a database of microbial growth conditions in defined media
Q34710106MetaNET--a web-accessible interactive platform for biological metabolic network analysis
Q41789680MetaPath Online: a web server implementation of the network expansion algorithm
Q59131499Metabolic Circuit Design Automation by Multi-objective BioCAD
Q33849784Metabolic Network-Based Interpretation of Gene Expression Data Elucidates Human Cellular Metabolism
Q90303181Metabolic engineering of Pichia pastoris GS115 for enhanced pentose phosphate pathway (PPP) flux toward recombinant human interferon gamma (hIFN-γ) production
Q46134614Metabolic flux analysis of Cyanothece sp. ATCC 51142 under mixotrophic conditions
Q46975443Metabolic modeling for multi-objective optimization of ethanol production in a Synechocystis mutant.
Q42733463Metabolic modeling of endosymbiont genome reduction on a temporal scale
Q37192595Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment
Q42281167Metabolic network model guided engineering ethylmalonyl-CoA pathway to improve ascomycin production in Streptomyces hygroscopicus var. ascomyceticus
Q37033446Metabolic network model of a human oral pathogen.
Q34029584Metabolic network modeling of redox balancing and biohydrogen production in purple nonsulfur bacteria
Q51577942Metabolic network reconstruction and flux variability analysis of storage synthesis in developing oilseed rape (Brassica napus L.) embryos
Q33994087Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052.
Q35035442Metabolic proximity in the order of colonization of a microbial community
Q33689651Metabolic reconstruction identifies strain-specific regulation of virulence in Toxoplasma gondii.
Q38047671Metabolic responses to recombinant bioprocesses in Escherichia coli
Q36369193Metabolomics analysis: Finding out metabolic building blocks
Q41889714Minimal cut sets and the use of failure modes in metabolic networks.
Q36993054Model-driven analysis of experimentally determined growth phenotypes for 465 yeast gene deletion mutants under 16 different conditions
Q35031478Model-driven discovery of underground metabolic functions in Escherichia coli
Q61443161ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions
Q40375742Modeling and Simulation of Optimal Resource Management during the Diurnal Cycle in Emiliania huxleyi by Genome-Scale Reconstruction and an Extended Flux Balance Analysis Approach
Q37964723Modeling formalisms in Systems Biology
Q35193476Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri
Q58801759Modeling the Metabolic State of Upon Infection
Q37271452Modelling and analysis of gene regulatory networks
Q43122194Modelling central metabolic fluxes by constraint-based optimization reveals metabolic reprogramming of developing Solanum lycopersicum (tomato) fruit.
Q51982575Modular epistasis in yeast metabolism
Q40414898Mosaic gene network modelling identified new regulatory mechanisms in HCV infection
Q80186518Multiple knockout analysis of genetic robustness in the yeast metabolic network
Q36888550Multiscale Model of Mycobacterium tuberculosis Infection Maps Metabolite and Gene Perturbations to Granuloma Sterilization Predictions
Q91329715Multiscale Multiobjective Systems Analysis (MiMoSA): an advanced metabolic modeling framework for complex systems
Q30489263NACE: A web-based tool for prediction of intercompartmental efficiency of human molecular genetic networks
Q33387681Natural computation meta-heuristics for the in silico optimization of microbial strains
Q39449213Observability of Plant Metabolic Networks Is Reflected in the Correlation of Metabolic Profiles
Q64117653OptRAM: In-silico strain design via integrative regulatory-metabolic network modeling
Q46687634Optimal cofactor swapping can increase the theoretical yield for chemical production in Escherichia coli and Saccharomyces cerevisiae
Q46094087Optimal flux patterns in cellular metabolic networks
Q42593545Optimal fluxes, reaction replaceability, and response to enzymopathies in the human red blood cell.
Q35633315Optimal metabolic regulation using a constraint-based model
Q33338251Optimization in computational systems biology
Q35822113Optimization of lipid production with a genome-scale model of Yarrowia lipolytica
Q42850343Optimization‐based metabolic control analysis
Q43031254Overflow metabolism and growth cessation in Clostridium thermocellum DSM1313 during high cellulose loading fermentations.
Q37861457Parameter Estimation Using Metaheuristics in Systems Biology: A Comprehensive Review
Q30999367Parameter Estimation for Gene Regulatory Networks from Microarray Data: Cold Shock Response in Saccharomyces cerevisiae.
Q37364514Pathway analyses and understanding disease associations
Q36248806Pathway-Consensus Approach to Metabolic Network Reconstruction for Pseudomonas putida KT2440 by Systematic Comparison of Published Models
Q35636333Perception and regulatory principles of microbial growth control
Q42704867Phenotypic characterization of Corynebacterium glutamicum using elementary modes towards synthesis of amino acids
Q50867326Phenotypic constraints promote latent versatility and carbon efficiency in metabolic networks.
Q42918997Photosensitivity in Smith-Lemli-Opitz syndrome: a flux balance analysis of altered metabolism.
Q37040312Photosynthetic metabolism of C3 plants shows highly cooperative regulation under changing environments: a systems biological analysis
Q37058451Physiology of mycobacteria
Q28068220Plant Microbe Interactions in Post Genomic Era: Perspectives and Applications
Q30443523Predicting biological system objectives de novo from internal state measurements
Q33713220Predicting enzyme targets for cancer drugs by profiling human Metabolic reactions in NCI-60 cell lines
Q48238418Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways
Q55279133Predicting the accumulation of storage compounds by Rhodococcus jostii RHA1 in the feast-famine growth cycles using genome-scale flux balance analysis.
Q41459934Predicting the murine enterocyte metabolic response to diets that differ in lipid and carbohydrate composition.
Q34389154Predictive Potential of Flux Balance Analysis of Saccharomyces cerevisiae Using as Optimization Function Combinations of Cell Compartmental Objectives
Q34200286Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis.
Q38968451Promise and reality in the expanding field of network interaction analysis: metabolic networks
Q40313697Properties of metabolic networks: structure versus function
Q28766251Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data
Q41820259Quantitative in silico Analysis of Neurotransmitter Pathways Under Steady State Conditions
Q44703138Quantitative modeling of triacylglycerol homeostasis in yeast--metabolic requirement for lipolysis to promote membrane lipid synthesis and cellular growth
Q28479041Randomizing Genome-Scale Metabolic Networks
Q28481337Reaction Networks as Systems for Resource Allocation: A Variational Principle for Their Non-Equilibrium Steady States
Q38525312Recent advances in elementary flux modes and yield space analysis as useful tools in metabolic network studies.
Q37219400Recent developments in parameter estimation and structure identification of biochemical and genomic systems
Q35028169Reconciling in vivo and in silico key biological parameters of Pseudomonas putida KT2440 during growth on glucose under carbon-limited condition
Q28484256Reconstruction and In Silico Analysis of Metabolic Network for an Oleaginous Yeast, Yarrowia lipolytica
Q21245221Reconstruction and flux analysis of coupling between metabolic pathways of astrocytes and neurons: application to cerebral hypoxia
Q30939059Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data
Q35574107Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model
Q34385115Reconstruction of cellular signalling networks and analysis of their properties
Q31132652Reconstruction of metabolic networks from high-throughput metabolite profiling data: in silico analysis of red blood cell metabolism
Q51914755Regularizing capacity of metabolic networks
Q28769658Regulatory on/off minimization of metabolic flux changes after genetic perturbations
Q46701016Scaling and optimal synergy: Two principles determining microbial growth in complex media.
Q46494798Selection of objective function in genome scale flux balance analysis for process feed development in antibiotic production
Q47671645Sensitivity and network topology in chemical reaction systems
Q42242972Shifts in growth strategies reflect tradeoffs in cellular economics
Q28473485Signatures of arithmetic simplicity in metabolic network architecture
Q47282649Size homeostasis can be intrinsic to growing cell populations and explained without size sensing or signalling
Q26824185Software applications for flux balance analysis
Q38059081Software applications toward quantitative metabolic flux analysis and modeling
Q51904401Something from nothing: bridging the gap between constraint-based and kinetic modelling
Q35133655Statistics-based model for prediction of chemical biosynthesis yield from Saccharomyces cerevisiae
Q41911489Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks
Q83152782Stoichiometric network reconstruction and analysis of yeast sphingolipid metabolism incorporating different states of hydroxylation
Q51331161Structural and dynamical analysis of biological networks
Q43445794Subcellular flux analysis of central metabolism in a heterotrophic Arabidopsis cell suspension using steady-state stable isotope labeling
Q28481411System-level insights into yeast metabolism by thermodynamic analysis of elementary flux modes
Q35213003Systematic analysis of transcription-level effects of neurodegenerative diseases on human brain metabolism by a newly reconstructed brain-specific metabolic network
Q33436246Systems analysis of bioenergetics and growth of the extreme halophile Halobacterium salinarum
Q30443168Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major
Q38035735Systems biology for molecular life sciences and its impact in biomedicine
Q38008573Systems biology tools for toxicology
Q28482439The Emergence and Early Evolution of Biological Carbon-Fixation
Q39330274The best models of metabolism
Q37975973The current state of microbial proteomics: where we are and where we want to go.
Q34785166The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
Q38045780The metabolism of neurons and astrocytes through mathematical models.
Q41859361The organisational structure of protein networks: revisiting the centrality-lethality hypothesis
Q46870608The role of flexibility and optimality in the prediction of intracellular fluxes of microbial central carbon metabolism
Q35905293The systems biology of glycosylation
Q42406509The thermodynamic meaning of metabolic exchange fluxes
Q33282913Toward the automated generation of genome-scale metabolic networks in the SEED.
Q33527111Towards a genome-scale kinetic model of cellular metabolism
Q35927574Towards a systems biology understanding of human health: interplay between genotype, environment and nutrition
Q55341520Transcriptomic and metabolic flux analyses reveal shift of metabolic patterns during rice grain development.
Q45935586UP Finder: A COBRA toolbox extension for identifying gene overexpression strategies for targeted overproduction.
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Q30426796Whole-genome metabolic network reconstruction and constraint-based modeling
Q34306483i AK692: A genome-scale metabolic model of Spirulina platensis C1
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