A comparative study of HIV-1 clade C env evolution in a Zambian infant with an infected rhesus macaque during disease progression

scientific article

A comparative study of HIV-1 clade C env evolution in a Zambian infant with an infected rhesus macaque during disease progression is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1097/QAD.0B013E32832F3DA6
P932PMC publication ID2901162
P698PubMed publication ID19609201

P50authorFederico G. HoffmannQ21391416
Philippe LemeyQ28322657
P2093author name stringCharles Wood
Hong Zhang
Ruth M Ruprecht
For Yue Tso
Robert A Rasmussen
Damien C Tully
P2860cites workCLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
Simian immunodeficiency virus (SIV) envelope quasispecies transmission and evolution in infant rhesus macaques after oral challenge with uncloned SIVmac251...Q24798276
Evolution of subtype C HIV-1 Env in a slowly progressing Zambian infantQ24815687
Correlation between immunologic responses to a recombinant glycoprotein 120 vaccine and incidence of HIV-1 infection in a phase 3 HIV-1 preventive vaccine trialQ28305565
Not so different after all: a comparison of methods for detecting amino acid sites under selectionQ28306719
Antibody neutralization and escape by HIV-1Q29547345
Unifying the epidemiological and evolutionary dynamics of pathogensQ29619092
SHIV-1157i and passaged progeny viruses encoding R5 HIV-1 clade C env cause AIDS in rhesus monkeysQ30372757
Mutational trends in V3 loop protein sequences observed in different genetic lineages of human immunodeficiency virus type 1.Q30420728
Molecularly cloned SHIV-1157ipd3N4: a highly replication- competent, mucosally transmissible R5 simian-human immunodeficiency virus encoding HIV clade C Env.Q33372270
Selection for human immunodeficiency virus type 1 envelope glycosylation variants with shorter V1-V2 loop sequences occurs during transmission of certain genetic subtypes and may impact viral RNA levelsQ33780649
Location-specific, unequal contribution of the N glycans in simian immunodeficiency virus gp120 to viral infectivity and removal of multiple glycans without disturbing infectivityQ33785035
Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infectionQ33825654
The V1, V2, and V3 regions of the human immunodeficiency virus type 1 envelope differentially affect the viral phenotype in an isolate-dependent mannerQ33883936
Persistent infection of rhesus macaques with T-cell-line-tropic and macrophage-tropic clones of simian/human immunodeficiency viruses (SHIV)Q34060230
Diversity considerations in HIV-1 vaccine selectionQ34136023
Consistent patterns of change during the divergence of human immunodeficiency virus type 1 envelope from that of the inoculated virus in simian/human immunodeficiency virus-infected macaquesQ34301728
SIV/HIV-1 chimeric viruses having HIV-1 env gene: a new animal model and a candidate for attenuated live vaccineQ73480875
Sensitive and robust one-tube real-time reverse transcriptase-polymerase chain reaction to quantify SIV RNA load: comparison of one- versus two-enzyme systemsQ74220155
AIDS vaccine development and challenge viruses: getting realQ79330996
Molecular evolution of human immunodeficiency virus env in humans and monkeys: similar patterns occur during natural disease progression or rapid virus passageQ34338411
The mannose-dependent epitope for neutralizing antibody 2G12 on human immunodeficiency virus type 1 glycoprotein gp120.Q34341843
The broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2G12 recognizes a cluster of alpha1-->2 mannose residues on the outer face of gp120.Q34342352
Human immunodeficiency virus type 1 V1-V2 envelope loop sequences expand and add glycosylation sites over the course of infection, and these modifications affect antibody neutralization sensitivityQ35101464
Characterization of HIV-1 subtype C envelope glycoproteins from perinatally infected children with different courses of diseaseQ35127401
Macaques infected with a CCR5-tropic simian/human immunodeficiency virus (SHIV) develop broadly reactive anti-HIV neutralizing antibodiesQ35857254
Clade-specific differences between human immunodeficiency virus type 1 clades B and C: diversity and correlations in C3-V4 regions of gp120.Q35857408
Unique mutational patterns in the envelope alpha 2 amphipathic helix and acquisition of length in gp120 hypervariable domains are associated with resistance to autologous neutralization of subtype C human immunodeficiency virus type 1.Q35857683
An env gene derived from a primary human immunodeficiency virus type 1 isolate confers high in vivo replicative capacity to a chimeric simian/human immunodeficiency virus in rhesus monkeysQ35860563
Characterization of molecularly cloned simian-human immunodeficiency viruses causing rapid CD4+ lymphocyte depletion in rhesus monkeysQ35885915
Evolution of human immunodeficiency virus type 1 in perinatally infected infants with rapid and slow progression to diseaseQ35887052
Removal of a single N-linked glycan in human immunodeficiency virus type 1 gp120 results in an enhanced ability to induce neutralizing antibody responsesQ36424574
The c3-v4 region is a major target of autologous neutralizing antibodies in human immunodeficiency virus type 1 subtype C infectionQ36483346
Patterns of HIV-1 evolution in individuals with differing rates of CD4 T cell declineQ36526893
Effect of amino acid changes in the V1/V2 region of the human immunodeficiency virus type 1 gp120 glycoprotein on subunit association, syncytium formation, and recognition by a neutralizing antibody.Q36649240
Identification and characterization of a neutralization site within the second variable region of human immunodeficiency virus type 1 gp120Q36690500
HIV-1 vaccine development: progress and prospectsQ36718578
Immune responses to HIV Gp120 that facilitate viral escapeQ36723993
In vitro mutagenesis identifies a region within the envelope gene of the human immunodeficiency virus that is critical for infectivityQ36825840
Comparative study of adaptive molecular evolution in different human immunodeficiency virus groups and subtypesQ36960293
N-linked glycosylation of the V3 loop and the immunologically silent face of gp120 protects human immunodeficiency virus type 1 SF162 from neutralization by anti-gp120 and anti-gp41 antibodiesQ37010852
Neutralizing antibodies elicited by immunization of monkeys with DNA plasmids and recombinant adenoviral vectors expressing human immunodeficiency virus type 1 proteinsQ37742938
Fatal immunopathogenesis by SIV/HIV-1 (SHIV) containing a variant form of the HIV-1SF33 env gene in juvenile and newborn rhesus macaquesQ39193008
Randomized, double-blind, placebo-controlled efficacy trial of a bivalent recombinant glycoprotein 120 HIV-1 vaccine among injection drug users in Bangkok, ThailandQ39358681
Efficacy of a multigenic protein vaccine containing multimeric HIV gp160 against heterologous SHIV clade C challengesQ39385001
Infection and pathogenicity of chimeric simian-human immunodeficiency viruses in macaques: determinants of high virus loads and CD4 cell killingQ39457075
Changes in human immunodeficiency virus type 1 fitness and genetic diversity during disease progressionQ39534825
Reversal of human immunodeficiency virus type 1 IIIB to a neutralization-resistant phenotype in an accidentally infected laboratory worker with a progressive clinical courseQ39605628
Immune-mediated positive selection drives human immunodeficiency virus type 1 molecular variation and predicts disease duration.Q39685744
Characterization of neutralization epitopes in the V2 region of human immunodeficiency virus type 1 gp120: role of glycosylation in the correct folding of the V1/V2 domain.Q39869632
Effects of mutations in constant regions 3 and 4 of envelope of simian immunodeficiency virusQ41326245
Carbohydrates of human immunodeficiency virus. Structures of oligosaccharides linked to the envelope glycoprotein 120.Q41986204
Posttranslational modifications within the HIV-1 envelope glycoprotein which restrict virus assembly and CD4-dependent infectionQ44030866
Immunization with HIV-1 SF162-derived Envelope gp140 proteins does not protect macaques from heterologous simian-human immunodeficiency virus SHIV89.6P infectionQ45419055
Placebo-controlled phase 3 trial of a recombinant glycoprotein 120 vaccine to prevent HIV-1 infection.Q45938142
Adaptation in the env gene of HIV-1 and evolutionary theories of disease progressionQ47872743
Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmissionQ47878972
Convergent evolution of SIV env after independent inoculation of rhesus macaques with infectious proviral DNAQ57697579
P433issue14
P407language of work or nameEnglishQ1860
P921main subjectZambiaQ953
MacacaQ177601
P304page(s)1817-1828
P577publication date2009-09-01
P1433published inAIDSQ4651863
P1476titleA comparative study of HIV-1 clade C env evolution in a Zambian infant with an infected rhesus macaque during disease progression
P478volume23

Reverse relations

cites work (P2860)
Q33393641Characterization of a new simian immunodeficiency virus strain in a naturally infected Pan troglodytes troglodytes chimpanzee with AIDS related symptoms
Q37834099Coreceptor use in nonhuman primate models of HIV infection
Q34200095Dynamics of envelope evolution in clade C SHIV-infected pig-tailed macaques during disease progression analyzed by ultra-deep pyrosequencing
Q28487168HIV-1 Env C2-V4 diversification in a slow-progressor infant reveals a flat but rugged fitness landscape
Q33533351Restricted genetic diversity of HIV-1 subtype C envelope glycoprotein from perinatally infected Zambian infants
Q34806205Variations in the Biological Functions of HIV-1 Clade C Envelope in a SHIV-Infected Rhesus Macaque during Disease Progression