Restriction endonucleases: classification, properties, and applications

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Restriction endonucleases: classification, properties, and applications is …
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review articleQ7318358
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P6179Dimensions Publication ID1018624526
P356DOI10.1385/MB:23:3:225
P698PubMed publication ID12665693

P2093author name stringRaymond J Williams
P2860cites workHoming endonucleases: keeping the house in orderQ24545192
BaeI, another unusual BcgI-like restriction endonucleaseQ24548142
Type I restriction systems: sophisticated molecular machines (a legacy of Bertani and Weigle)Q24548508
Structure and function of type II restriction endonucleasesQ24555230
FokI dimerization is required for DNA cleavageQ24657843
A novel endonuclease mechanism directly visualized for I-PpoIQ27620540
Understanding the immutability of restriction enzymes: crystal structure of BglII and its DNA substrate at 1.5 A resolutionQ27621185
Crystallographic snapshots along a protein-induced DNA-bending pathwayQ27622467
Crystal structure of NaeI--an evolutionary bridge between DNA endonuclease and topoisomeraseQ27624935
Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNAQ27626779
Structure of the multimodular endonuclease FokI bound to DNAQ27740190
Duplex regions in "single-stranded" phiX174 DNA are cleaved by a restriction endonuclease from Haemophilus aegyptiusQ28279042
Single-site enzymatic cleavage of yeast genomic DNA mediated by triple helix formationQ33335575
Type II restriction endonucleases: structural, functional and evolutionary relationshipsQ33745019
Requirements for double-strand cleavage by chimeric restriction enzymes with zinc finger DNA-recognition domainsQ33786657
Stimulation of homologous recombination through targeted cleavage by chimeric nucleasesQ33927812
Characterization of the specific DNA nicking activity of restriction endonuclease N.BstNBI.Q33930994
The nicking endonuclease N.BstNBI is closely related to type IIs restriction endonucleases MlyI and PleIQ33939599
Engineering a nicking endonuclease N.AlwI by domain swappingQ33949016
A Suggested nomenclature for bacterial host modification and restriction systems and their enzymesQ34052438
High-specificity DNA cleavage agent: design and application to kilobase and megabase DNA substratesQ34331741
Recognition and cleavage of DNA by type-II restriction endonucleasesQ34431350
Comparative genomics of the restriction-modification systems in Helicobacter pyloriQ34489772
Step-wise DNA relaxation and decatenation by NaeI-43K.Q34666242
DNA affinity cleaving analysis of homeodomain-DNA interaction: identification of homeodomain consensus sites in genomic DNAQ34903207
Changes in solvation during DNA binding and cleavage are critical to altered specificity of the EcoRI endonucleaseQ35906064
A family of regulatory genes associated with type II restriction-modification systemsQ36130467
Structural, functional, and evolutionary relationships between lambda-exonuclease and the type II restriction endonucleasesQ36163748
Restriction and modification systemsQ37041891
Chimeric restriction endonucleaseQ37558156
Introduction of asymmetry in the naturally symmetric restriction endonuclease EcoRV to investigate intersubunit communication in the homodimeric proteinQ37577354
Finding sequence motifs in groups of functionally related proteinsQ37679318
Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysisQ37698719
Class-IIS restriction enzymes--a reviewQ37765759
SfiI endonuclease activity is strongly influenced by the non-specific sequence in the middle of its recognition siteQ38302971
The energetics of the interaction of BamHI endonuclease with its recognition site GGATCC.Q38303246
Protein engineering of the restriction endonuclease EcoRV: replacement of an amino acid residue in the DNA binding site leads to an altered selectivity towards unmodified and modified substratesQ38304399
Use of specific oligonucleotide duplexes to stimulate cleavage of refractory DNA sites by restriction endonucleasesQ38321306
Modified DNA fragments activate NaeI cleavage of refractory DNA sitesQ38325335
Kinetic characterization of linear diffusion of the restriction endonuclease EcoRV on DNA.Q38339073
Cloning, expression, and purification of a thermostable nonhomodimeric restriction enzyme, BslI.Q39498995
Identification of a base-specific contact between the restriction endonuclease SsoII and its recognition sequence by photocross-linkingQ39542583
Substrate DNA and cofactor regulate the activities of a multi-functional restriction-modification enzyme, BcgI.Q39721172
Cloning and analysis of the four genes coding for Bpu10I restriction-modification enzymesQ39722909
A detailed study of the substrate specificity of a chimeric restriction enzyme.Q39726873
The regulatory C proteins from different restriction-modification systems can cross-complementQ39839024
The significance of distance and orientation of restriction endonuclease recognition sites in viral DNA genomes.Q40479056
Activation of restriction endonuclease EcoRII does not depend on the cleavage of stimulator DNA.Q40507377
RecA-AC: single-site cleavage of plasmids and chromosomes at any predetermined restriction siteQ40535370
Purification and properties of the Eco57I restriction endonuclease and methylase--prototypes of a new class (type IV)Q40535626
Ability of DNA and spermidine to affect the activity of restriction endonucleases from several bacterial speciesQ43886671
EcoRV restriction endonuclease: communication between catalytic metal ions and DNA recognitionQ45108243
Purification of restriction endonuclease from Acetobacter aceti IFO 3281 (AatII) and its propertiesQ45804234
Reagents for the site-specific cleavage of megabase DNA.Q45949187
Analyzing the functional organization of a novel restriction modification system, the BcgI systemQ47923479
Chimeric restriction enzyme: Gal4 fusion to FokI cleavage domainQ47970000
Restriction and modification systems of Neisseria gonorrhoeae.Q48073660
Linkage of EcoRI dissociation from its specific DNA recognition site to water activity, salt concentration, and pH: separating their roles in specific and non-specific bindingQ49203449
Purification of a new restriction endonuclease, StyI, from Escherichia coli carrying the hsd+ miniplasmidQ50206784
The energetic basis of specificity in the Eco RI endonuclease--DNA interaction.Q52484098
Diversity of restriction-modification gene homologues in Helicobacter pylori.Q52927779
Cooperative binding properties of restriction endonuclease EcoRII with DNA recognition sites.Q52995430
XcmI as a universal restriction enzyme for single-stranded DNA.Q53834773
EcoRV-T94V: a mutant restriction endonuclease with an altered substrate specificity towards modified oligodeoxynucleotides.Q54053124
Oligonucleotide activation of the type IIe restriction enzyme NaeI for digestion of refractory sites.Q54155861
Towards the design of rare cutting restriction endonucleases: using directed evolution to generate variants of EcoRV differing in their substrate specificity by two orders of magnitudeQ56902829
Protein engineering of the restriction endonuclease EcoRV . Structure-guided design of enzyme variants that recognize the base pairs flanking the recognition siteQ57267701
The Mechanism of DNA Cleavage by the Type II. Restriction Enzyme EcoRV: Asp36 Is Not Directly Involved in DNA Cleavage but Serves to Couple Indirect. Readout to CatalysisQ57267708
Site-specific cleavage of DNA–RNA hybrids by zinc finger/FokI cleavage domain fusionsQ58375256
The Cfr10I restriction enzyme is functional as a tetramerQ60500600
Cloning the modification methylase gene of Bacillus sphaericus R in Escherichia coliQ60505834
[N.BstSE--a site-specific nickase from Bacillus stearothermophilus SE-589]Q64382667
Incorporation of an EDTA-metal complex at a rationally selected site within a protein: application to EDTA-iron DNA affinity cleaving with catabolite gene activator protein (CAP) and CroQ67505524
DNA cleavage at two recognition sites by the SfiI restriction endonuclease: salt dependence of cis and trans interactions between distant DNA sitesQ71751602
Minimum duplex requirements for restriction enzyme cleavage near the termini of linear DNA fragmentsQ72045587
The SfiI restriction endonuclease makes a four-strand DNA break at two copies of its recognition sequenceQ72241576
Cleavage of single strand oligonucleotides and bacteriophage phi X174 DNA by Msp I endonucleaseQ72620657
DNA topoisomerase and recombinase activities in Nae I restriction endonucleaseQ72635901
Evidence for mutations that break communication between the Endo and Topo domains in NaeI endonuclease/topoisomeraseQ73185528
Evolutionary role of restriction/modification systems as revealed by comparative genome analysisQ73943265
FokI requires two specific DNA sites for cleavageQ74326486
DNA cleavage reactions by type II restriction enzymes that require two copies of their recognition sitesQ74328897
Digestion of terminal restriction endonuclease recognition sites on PCR productsQ74492699
Phosphorothioate substrates for the SfiI restriction endonucleaseQ74653655
Does BcgI, a unique restriction endonuclease, require two recognition sites for cleavage?Q74653661
P433issue3
P304page(s)225-243
P577publication date2003-03-01
P1433published inMolecular BiotechnologyQ15761195
P1476titleRestriction endonucleases: classification, properties, and applications
P478volume23