Nucleotide polymorphism and linkage disequilibrium in wild populations of the partial selfer Caenorhabditis elegans

scientific article

Nucleotide polymorphism and linkage disequilibrium in wild populations of the partial selfer Caenorhabditis elegans is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1534/GENETICS.105.048207
P932PMC publication ID1456145
P698PubMed publication ID16272415
P5875ResearchGate publication ID7496524

P50authorAsher D CutterQ58158597
P2860cites workThe genome sequence of Caenorhabditis briggsae: a platform for comparative genomicsQ21092840
The pattern of polymorphism in Arabidopsis thalianaQ21146096
Statistical method for testing the neutral mutation hypothesis by DNA polymorphismQ24532326
Statistical tests of neutrality of mutationsQ24532850
The effect of deleterious mutations on neutral molecular variationQ24532876
Inference of population structure using multilocus genotype dataQ24548114
Mathematical model for studying genetic variation in terms of restriction endonucleasesQ24564849
Statistical significance for genomewide studiesQ24681264
Recombination and base composition: the case of the highly self-fertilizing plant Arabidopsis thalianaQ24805150
Systematic functional analysis of the Caenorhabditis elegans genome using RNAiQ27860839
DnaSP, DNA polymorphism analyses by the coalescent and other methodsQ27860965
On the number of segregating sites in genetical models without recombinationQ28206543
The hitch-hiking effect of a favourable geneQ28241578
Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron lossQ28775792
Worldwide DNA sequence variation in a 10-kilobase noncoding region on human chromosome 22Q28776624
Evolutionary relationship of DNA sequences in finite populationsQ29547163
Codon usage in Caenorhabditis elegans: delineation of translational selection and mutational biasesQ40400353
Molecular correlates of genes exhibiting RNAi phenotypes in Caenorhabditis elegansQ40544874
Effects of inbreeding on the genetic diversity of populationsQ40877911
A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphismQ41935499
Bounds on the minimum number of recombination events in a sample history.Q42261142
Linkage disequilibrium, gene trees and selfing: an ancestral recombination graph with partial self-fertilizationQ42557096
Structured coalescent processes on different time scales.Q42967848
A metapopulation perspective on genetic diversity and differentiation in partially self-fertilizing plantsQ44110229
Sampling from natural populations with RNAI reveals high outcrossing and population structure in Caenorhabditis elegans.Q45933364
The effects of artificial selection on the maize genomeQ46515058
Global patterns of human DNA sequence variation in a 10-kb region on chromosome 1.Q47643970
Selection at linked sites in the partial selfer Caenorhabditis elegansQ47990114
Phylogenetics in Caenorhabditis elegans: an analysis of divergence and outcrossingQ48026970
Selection on codon usage in Drosophila americanaQ48209123
Resource Allocation and the Evolution of Self-Fertilization in Plants.Q50657039
The two-locus ancestral graph in a subdivided population: convergence as the number of demes grows in the island model.Q52002737
Sexual and temporal dynamics of molecular evolution in C. elegans development.Q52087513
Contrasting patterns of X-linked and autosomal nucleotide variation in Drosophila melanogaster and Drosophila simulans.Q52586421
High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome.Q52965913
Multigenic drug resistance among inbred malaria parasites.Q55668286
Molecular barcodes for soil nematode identificationQ63975922
The proximate determinants of sex ratio in C. elegans populationsQ73693784
The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populationsQ74115509
Linkage disequilibrium in finite populationsQ87127089
INBREEDING AND THE COST OF MEIOSIS: THE EVOLUTION OF SELFING IN POPULATIONS PRACTICING BIPARENTAL INBREEDINGQ88179295
NEUTRAL GENETIC DIVERSITY IN A METAPOPULATION WITH RECURRENT LOCAL EXTINCTION AND RECOLONIZATIONQ88201356
EXTINCTION AND RECOLONIZATION: THEIR EFFECTS ON THE GENETIC DIFFERENTIATION OF LOCAL POPULATIONSQ88236458
Global dispersal of free-living microbial eukaryote speciesQ29616777
Statistical properties of the number of recombination events in the history of a sample of DNA sequencesQ29617408
Rapid gene mapping in Caenorhabditis elegans using a high density polymorphism mapQ29618616
genalex 6: genetic analysis in Excel. Population genetic software for teaching and researchQ29642132
LIAN 3.0: detecting linkage disequilibrium in multilocus data. Linkage AnalysisQ30620655
Estimating recombination rates from population genetic dataQ30666425
Theory of the effects of population structure and sampling on patterns of linkage disequilibrium applied to genomic data from humansQ30813006
Inferring the fitness effects of DNA mutations from polymorphism and divergence data: statistical power to detect directional selection under stationarity and free recombination.Q31942611
Libsequence: a C++ class library for evolutionary genetic analysis.Q33195216
Molecular population genetics of the Arabidopsis CLAVATA2 region. The genomic scale of variation and selection in a selfing speciesQ33338233
tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genesQ33945645
Synonymous codon usage, accuracy of translation, and gene length in Caenorhabditis elegans.Q33953324
On the theory of partially inbreeding finite populations. I. Partial selfingQ33953457
Mode and tempo of molecular evolution in the nematode caenorhabditis: cytochrome oxidase II and calmodulin sequencesQ33957921
Absence of strong heterosis for life span and other life history traits in Caenorhabditis elegansQ33961024
Natural variation and copulatory plug formation in Caenorhabditis elegansQ33969902
The coalescent process with selfingQ33970325
Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogasterQ34259360
Evolutionary history of Caenorhabditis elegans inferred from microsatellites: evidence for spatial and temporal genetic differentiation and the occurrence of outbreedingQ34348846
Microevolutionary studies in nematodes: a beginningQ34356120
High local genetic diversity and low outcrossing rate in Caenorhabditis elegans natural populationsQ34432468
Gene genealogies in a metapopulationQ34518475
Coalescence in a metapopulation with recurrent local extinction and recolonizationQ34535034
High genetic diversity in the chemoreceptor superfamily of Caenorhabditis elegans.Q34572650
Genetic variation within and among populations of Arabidopsis thaliana.Q34603518
Nonequilibrium migration in human historyQ34608395
Why are there males in the hermaphroditic species Caenorhabditis elegans?Q34614500
Selection and maintenance of androdioecy in Caenorhabditis elegansQ34614701
Levels of DNA polymorphism vary with mating system in the nematode genus caenorhabditis.Q34614999
Population genetics of Caenorhabditis elegans: the paradox of low polymorphism in a widespread species.Q34616893
Single nucleotide polymorphisms in wild isolates of Caenorhabditis elegans.Q35029517
Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomesQ35891439
Genetic instability of C. elegans comes naturallyQ36015379
Genetic analysis of life-span in Caenorhabditis elegansQ36318911
Molecular evolution and quantitative variation for chemosensory behaviour in the nematode genus CaenorhabditisQ38355590
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectCaenorhabditis elegansQ91703
linkage disequilibriumQ2064311
disequilibriumQ5282160
P304page(s)171-184
P577publication date2005-11-04
P1433published inGeneticsQ3100575
P1476titleNucleotide polymorphism and linkage disequilibrium in wild populations of the partial selfer Caenorhabditis elegans
P478volume172

Reverse relations

cites work (P2860)
Q47550828A Model for Evolutionary Ecology of Disease: The Case for Caenorhabditis Nematodes and Their Natural Parasites
Q37364105A genome-wide view of Caenorhabditis elegans base-substitution mutation processes.
Q93091027A primer on pheromone signaling in Caenorhabditis elegans for systems biologists
Q38418687A rapid and massive gene expression shift marking adolescent transition in C. elegans
Q33784965A recent global selective sweep on the age-1 phosphatidylinositol 3-OH kinase regulator of the insulin-like signaling pathway within Caenorhabditis remanei.
Q34312048Adaptive evolution: evaluating empirical support for theoretical predictions
Q31032715All eggs are not equal: the maternal environment affects progeny reproduction and developmental fate in Caenorhabditis elegans
Q42052008Background selection in single genes may explain patterns of codon bias
Q39400616Breaking RAD: An evaluation of the utility of restriction site associated DNA sequencing for genome scans of adaptation
Q33734304Breaking RAD: an evaluation of the utility of restriction site-associated DNA sequencing for genome scans of adaptation
Q35216880C. elegans outside the Petri dish
Q28742637Caenorhabditis briggsae recombinant inbred line genotypes reveal inter-strain incompatibility and the evolution of recombination
Q37856452Caenorhabditis elegans as a platform for molecular quantitative genetics and the systems biology of natural variation
Q36152597CeNDR, the Caenorhabditis elegans natural diversity resource
Q30514475Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity
Q37203984Coalescence and genetic diversity in sexual populations under selection
Q47239102Comparative population genomics in Collinsia sister species reveals evidence for reduced effective population size, relaxed selection, and evolution of biased gene conversion with an ongoing mating system shift
Q33526497Copy number variation in the genomes of twelve natural isolates of Caenorhabditis elegans
Q83225462Deep sampling of Hawaiian reveals high genetic diversity and admixture with global populations
Q34423817Direct measurements of drag forces in C. elegans crawling locomotion.
Q44026163Distinct patterns of genetic variation in Pristionchus pacificus and Caenorhabditis elegans, two partially selfing nematodes with cosmopolitan distribution
Q36050496Do males facilitate the spread of novel phenotypes within populations of the androdioecious nematode Caenorhabditis elegans?
Q33924615Does thermoregulatory behavior maximize reproductive fitness of natural isolates of Caenorhabditis elegans?
Q36001706Duplication and divergence: the evolution of nematode globins
Q36263760Effect of mutation mechanisms on variant composition and distribution in Caenorhabditis elegans
Q35895461Evolutionary perspectives on clonal reproduction in vertebrate animals
Q33877473Experimental Evolution with Caenorhabditis Nematodes.
Q51575107Experimental evolution of the Caenorhabditis elegans sex determination pathway.
Q33351103Experimental insight into the proximate causes of male persistence variation among two strains of the androdioecious Caenorhabditis elegans (Nematoda)
Q92963445Exploring the causes of small effective population sizes in cyst nematodes using artificial Globodera pallida populations
Q34203627Fitness recovery and compensatory evolution in natural mutant lines of C. elegans
Q35561956Full-genome evolutionary histories of selfing, splitting, and selection in Caenorhabditis
Q22122006Fundamental concepts in genetics: Effective population size and patterns of molecular evolution and variation
Q41030787Gene Expression Evolves under a House-of-Cards Model of Stabilizing Selection.
Q35466308Gene conversion and DNA sequence polymorphism in the sex-determination gene fog-2 and its paralog ftr-1 in Caenorhabditis elegans
Q34956179Gene-environment and protein-degradation signatures characterize genomic and phenotypic diversity in wild Caenorhabditis elegans populations
Q45011125Genetic Subdivision and Variation in Selfing Rates Among Central American Populations of the Mangrove Rivulus, Kryptolebias marmoratus
Q33729960Genetic variation in neurodegenerative diseases and its accessibility in the model organism Caenorhabditis elegans
Q42947468Genome-wide linkage disequilibrium in nine-spined stickleback populations
Q51697608Hakuna Nematoda: genetic and phenotypic diversity in African isolates of Caenorhabditis elegans and C. briggsae.
Q35060018Heat avoidance is regulated by transient receptor potential (TRP) channels and a neuropeptide signaling pathway in Caenorhabditis elegans
Q33738119Hermaphrodite life history and the maintenance of partial selfing in experimental populations of Caenorhabditis elegans
Q37152703High nucleotide divergence in developmental regulatory genes contrasts with the structural elements of olfactory pathways in caenorhabditis
Q34563174High nucleotide polymorphism and rapid decay of linkage disequilibrium in wild populations of Caenorhabditis remanei
Q34667651High spontaneous rate of gene duplication in Caenorhabditis elegans
Q55153017Impact of mating systems on patterns of sequence polymorphism in flowering plants.
Q28727624In with the old, in with the new: the promiscuity of the duplication process engenders diverse pathways for novel gene creation
Q28304705Inbreeding and outbreeding depression in Caenorhabditis nematodes
Q37233772Inferring selection in the Anopheles gambiae species complex: an example from immune-related serine protease inhibitors
Q37062496Inverse correlation between longevity and developmental rate among wild C. elegans strains.
Q44552980Limited genomic consequences of mixed mating in the recently derived sister species pair, Collinsia concolor and Collinsia parryi
Q36976462Mechanisms and evolution of environmental responses in Caenorhabditis elegans
Q34479071Mos1-mediated transgenesis to probe consequences of single gene mutations in variation-rich isolates of Caenorhabditis elegans
Q33321332Muller's Ratchet and compensatory mutation in Caenorhabditis briggsae mitochondrial genome evolution
Q41888264Multilocus patterns of polymorphism and selection across the X chromosome of Caenorhabditis remanei
Q34711930Natural variation for lifespan and stress response in the nematode Caenorhabditis remanei
Q37173380Nucleotide polymorphism and within-gene recombination in Daphnia magna and D. pulex, two cyclical parthenogens
Q28755383Nucleotide variation, linkage disequilibrium and founder-facilitated speciation in wild populations of the zebra finch (Taeniopygia guttata)
Q28754380On the potential for extinction by Muller's ratchet in Caenorhabditis elegans
Q51714423Oscheius tipulae, a widespread hermaphroditic soil nematode, displays a higher genetic diversity and geographical structure than Caenorhabditis elegans.
Q33811376Outcrossing and the maintenance of males within C. elegans populations
Q91664495Partial Selfing Can Reduce Genetic Loads While Maintaining Diversity During Experimental Evolution
Q36571779Patterns of molecular evolution in Caenorhabditis preclude ancient origins of selfing.
Q35038514Patterns of nucleotide polymorphism distinguish temperate and tropical wild isolates of Caenorhabditis briggsae
Q46910878Polygenicity and Epistasis Underlie Fitness-Proximal Traits in the Caenorhabditis elegans Multiparental Experimental Evolution (CeMEE) Panel.
Q82230505Population frequencies of transposable elements in selfing and outcrossing Caenorhabditis nematodes
Q37353910Population genomics of the inbred Scandinavian wolf
Q37378244Progress and prospects toward our understanding of the evolution of dosage compensation
Q37095253Quantifying inbreeding in natural populations of hermaphroditic organisms
Q33417666Recombinational landscape and population genomics of Caenorhabditis elegans
Q47262537Ribosomal RNA gene diversity, effective population size, and evolutionary longevity in asexual glomeromycota
Q79428556Selection against males in Caenorhabditis elegans under two mutational treatments
Q39388492Selection on Position of Nonsense Codons in Introns
Q41669759Selective sweeps and parallel mutation in the adaptive recovery from deleterious mutation in Caenorhabditis elegans
Q46923022Selfing, adaptation and background selection in finite populations
Q33452924Similar patterns of linkage disequilibrium and nucleotide diversity in native and introduced populations of the pea aphid, Acyrthosiphon pisum
Q34545998Species richness, distribution and genetic diversity of Caenorhabditis nematodes in a remote tropical rainforest.
Q39366931Temperature-dependent fecundity associates with latitude in Caenorhabditis briggsae
Q34615909Temporal dynamics and linkage disequilibrium in natural Caenorhabditis elegans populations
Q36651163Temporal sampling helps unravel the genetic structure of naturally occurring populations of a phytoparasitic nematode. 1. Insights from the estimation of effective population sizes
Q36057856Ten years of life in compost: temporal and spatial variation of North German Caenorhabditis elegans populations.
Q48115079The Local Coexistence Pattern of Selfing Genotypes in Caenorhabditis elegans Natural Metapopulations
Q33642808The Natural Biotic Environment of Caenorhabditis elegans.
Q33996718The genotypic structure of a multi-host bumblebee parasite suggests a role for ecological niche overlap
Q35800352The species, sex, and stage specificity of a Caenorhabditis sex pheromone
Q36287693Variation in rates of spontaneous male production within the nematode species Pristionchus pacificus supports an adaptive role for males and outcrossing.
Q21092438Variation, sex, and social cooperation: molecular population genetics of the social amoeba Dictyostelium discoideum
Q36992204Virgin Caenorhabditis remanei females are attracted to a coital pheromone released by con-specific copulating males
Q30478649Whole genome sequencing highlights genetic changes associated with laboratory domestication of C. elegans
Q38987657Widespread genetic incompatibility in C. elegans maintained by balancing selection
Q46261914X exceptionalism in Caenorhabditis speciation.

Search more.