Gene-environment and protein-degradation signatures characterize genomic and phenotypic diversity in wild Caenorhabditis elegans populations

scientific article

Gene-environment and protein-degradation signatures characterize genomic and phenotypic diversity in wild Caenorhabditis elegans populations is …
instance of (P31):
scholarly articleQ13442814

External links are
P6179Dimensions Publication ID1018004675
P356DOI10.1186/1741-7007-11-93
P2888exact matchhttps://scigraph.springernature.com/pub.10.1186/1741-7007-11-93
P932PMC publication ID3846632
P698PubMed publication ID23957880
P5875ResearchGate publication ID255984606

P50authorMark G. SterkenQ55188426
Bart BraeckmanQ56296403
P2093author name stringWei Chen
Wentao Yang
Jan E Kammenga
L Basten Snoek
Hinrich Schulenburg
Rita J M Volkers
Caspara J van Hellenberg Hubar
Renata Coopman
P2860cites workBias and evolution of the mutationally accessible phenotypic space in a developmental systemQ21563318
Diversity and specificity in the interaction between Caenorhabditis elegans and the pathogen Serratia marcescensQ24804560
Distinct pathogenesis and host responses during infection of C. elegans by P. aeruginosa and S. aureusQ27313965
p38 MAPK regulates expression of immune response genes and contributes to longevity in C. elegansQ27315174
A novel sperm-delivered toxin causes late-stage embryo lethality and transmission ratio distortion in C. elegansQ27321204
The Caenorhabditis elegans JNK signaling pathway activates expression of stress response genes by derepressing the Fos/HDAC repressor complexQ27324417
Normalization of cDNA microarray dataQ28181692
F-box proteins: the key to protein degradationQ28296039
phangorn: phylogenetic analysis in RQ29396329
The Drosophila melanogaster Genetic Reference PanelQ30418740
Whole genome sequencing highlights genetic changes associated with laboratory domestication of C. elegansQ30478649
Molecular basis of the copulatory plug polymorphism in Caenorhabditis elegansQ30484978
Gene expression profiling to characterize sediment toxicity--a pilot study using Caenorhabditis elegans whole genome microarraysQ30487296
Quantitative mapping of a digenic behavioral trait implicates globin variation in C. elegans sensory behaviorsQ30491423
Linking toxicant physiological mode of action with induced gene expression changes in Caenorhabditis elegansQ30494184
The Nematode Caenorhabditis elegans, Stress and Aging: Identifying the Complex Interplay of Genetic Pathways Following the Treatment with Humic SubstancesQ30513474
Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversityQ30514475
WormQTL--public archive and analysis web portal for natural variation data in Caenorhabditis spp.Q30578495
The Caenorhabditis chemoreceptor gene familiesQ30848285
Mapping determinants of gene expression plasticity by genetical genomics in C. elegansQ33267908
A Caenorhabditis elegans wild type defies the temperature-size rule owing to a single nucleotide polymorphism in tra-3.Q33276638
Anti-fungal innate immunity in C. elegans is enhanced by evolutionary diversification of antimicrobial peptidesQ33352702
Comparative developmental expression profiling of two C. elegans isolatesQ33396644
Recombinational landscape and population genomics of Caenorhabditis elegansQ33417666
Distinct patterns of gene and protein expression elicited by organophosphorus pesticides in Caenorhabditis elegansQ33436423
Caenorhabditis elegans genomic response to soil bacteria predicts environment-specific genetic effects on life history traitsQ33463267
A genome-wide library of CB4856/N2 introgression lines of Caenorhabditis elegans.Q33471263
Copy number variation in the genomes of twelve natural isolates of Caenorhabditis elegansQ33526497
Genetic and physiological activation of osmosensitive gene expression mimics transcriptional signatures of pathogen infection in C. elegansQ33528953
Protist-type lysozymes of the nematode Caenorhabditis elegans contribute to resistance against pathogenic Bacillus thuringiensisQ34023766
Gene expression modifications by temperature-toxicants interactions in Caenorhabditis elegansQ34023900
HIF-1 and SKN-1 coordinate the transcriptional response to hydrogen sulfide in Caenorhabditis elegans.Q34043275
Global genetic robustness of the alternative splicing machinery in Caenorhabditis elegansQ34131586
Evolutionary history of Caenorhabditis elegans inferred from microsatellites: evidence for spatial and temporal genetic differentiation and the occurrence of outbreedingQ34348846
System wide analysis of the evolution of innate immunity in the nematode model species Caenorhabditis elegans and Pristionchus pacificusQ34426995
High local genetic diversity and low outcrossing rate in Caenorhabditis elegans natural populationsQ34432468
Anti-inflammatory Lactobacillus rhamnosus CNCM I-3690 strain protects against oxidative stress and increases lifespan in Caenorhabditis elegansQ34540781
Analysis of homologous gene clusters in Caenorhabditis elegans reveals striking regional cluster domainsQ34587143
Nucleotide polymorphism and linkage disequilibrium in wild populations of the partial selfer Caenorhabditis elegansQ34587163
Nuclear hormone receptors in nematodes: evolution and functionQ34590386
Population genetics of Caenorhabditis elegans: the paradox of low polymorphism in a widespread species.Q34616893
Genome-wide gene expression regulation as a function of genotype and age in C. elegans.Q34619782
Single nucleotide polymorphisms in wild isolates of Caenorhabditis elegans.Q35029517
Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci.Q35616354
Genomic analysis of immune response against Vibrio cholerae hemolysin in Caenorhabditis elegansQ36000812
More than the sum of its parts: a complex epistatic network underlies natural variation in thermal preference behavior in Caenorhabditis elegansQ36439857
Toxicogenomic analysis of Caenorhabditis elegans reveals novel genes and pathways involved in the resistance to cadmium toxicityQ36672412
Beyond induced mutants: using worms to study natural variation in genetic pathways.Q37104190
Specificity of the innate immune system and diversity of C-type lectin domain (CTLD) proteins in the nematode Caenorhabditis elegansQ37136137
Comparing mutational and standing genetic variability for fitness and size in Caenorhabditis briggsae and C. elegansQ37397496
A fitness assay for comparing RNAi effects across multiple C. elegans genotypesQ38918562
Natural variation in the response of Caenorhabditis elegans towards Bacillus thuringiensisQ40509430
A genomic bias for genotype-environment interactions in C. elegansQ41860839
Genomic clusters, putative pathogen recognition molecules, and antimicrobial genes are induced by infection of C. elegans with M. nematophilumQ41910269
Aging Uncouples Heritability and Expression-QTL in Caenorhabditis elegansQ41958461
Selection at linked sites shapes heritable phenotypic variation in C. elegansQ42257621
Genetical Genomics Reveals Large Scale Genotype-By-Environment Interactions in Arabidopsis thalianaQ42626252
Genetic mapping of variation in dauer larvae development in growing populations of Caenorhabditis elegansQ42856394
A systematic gene expression screen of Caenorhabditis elegans cytochrome P450 genes reveals CYP35 as strongly xenobiotic inducibleQ43791723
Caenorhabditis elegans as an environmental monitor using DNA microarray analysis.Q43857225
Changes in Caenorhabditis elegans life span and selective innate immune genes during Staphylococcus aureus infectionQ44401326
Analysis of Shigella flexneri-mediated infections in model organism Caenorhabditis elegans.Q45950129
Fertility and germline stem cell maintenance under different diets requires nhr-114/HNF4 in C. elegansQ47068754
C. elegans behavior of preference choice on bacterial food.Q48458688
Effects of sequential infections of Caenorhabditis elegans with Staphylococcus aureus and Proteus mirabilis.Q54293419
A differential proteomics study of Caenorhabditis elegans infected with Aeromonas hydrophilaQ60171266
Toxicity of simple mixtures to the nematode Caenorhabditis elegans in relation to soil sorptionQ76381281
Environmental influence on the genetic correlations between life-history traits in Caenorhabditis elegansQ79487708
Thermal variation reveals natural variation between isolates of Caenorhabditis elegansQ80011051
Mapping phenotypic plasticity and genotype-environment interactions affecting life-history traits in Caenorhabditis elegansQ80217904
Genetic variation for stress-response hormesis in C. elegans lifespanQ84185490
Caenorhabditis elegans as a model for studying Cronobacter sakazakii ATCC BAA-894 pathogenesisQ84312954
P4510describes a project that useslimmaQ112236343
P921main subjectbiodiversityQ47041
Caenorhabditis elegansQ91703
P304page(s)93
P577publication date2013-08-19
P1433published inBMC BiologyQ2545642
P1476titleGene-environment and protein-degradation signatures characterize genomic and phenotypic diversity in wild Caenorhabditis elegans populations
P478volume11

Reverse relations

cites work (P2860)
Q35108035A heritable antiviral RNAi response limits Orsay virus infection in Caenorhabditis elegans N2.
Q64100922A multi-parent recombinant inbred line population of C. elegans allows identification of novel QTLs for complex life history traits
Q38418687A rapid and massive gene expression shift marking adolescent transition in C. elegans
Q101409957Bacterial diets differentially alter lifespan and healthspan trajectories in C. elegans
Q35679044Caenorhabditis evolution in the wild
Q27305421Collective effects of common SNPs in foraging decisions in Caenorhabditis elegans and an integrative method of identification of candidate genes
Q35986214Contrasting invertebrate immune defense behaviors caused by a single gene, the Caenorhabditis elegans neuropeptide receptor gene npr-1
Q32175942Contribution of trans regulatory eQTL to cryptic genetic variation in C. elegans.
Q37565759Correlations of Genotype with Climate Parameters Suggest Caenorhabditis elegans Niche Adaptations
Q35856540Enhancing metaproteomics--The value of models and defined environmental microbial systems
Q64068812Genetic background modifies phenotypic and transcriptional responses in a C. elegans model of α-synuclein toxicity
Q33729960Genetic variation in neurodegenerative diseases and its accessibility in the model organism Caenorhabditis elegans
Q35138100Genome-wide variations in a natural isolate of the nematode Caenorhabditis elegans
Q42747602Genotype-dependent lifespan effects in peptone deprived Caenorhabditis elegans
Q37062496Inverse correlation between longevity and developmental rate among wild C. elegans strains.
Q33606421Loss-of-function of β-catenin bar-1 slows development and activates the Wnt pathway in Caenorhabditis elegans
Q37597380Multigenic natural variation underlies Caenorhabditis elegans olfactory preference for the bacterial pathogen Serratia marcescens
Q36876119Natural Genetic Variation Differentially Affects the Proteome and Transcriptome in Caenorhabditis elegans.
Q36243357On predicting regulatory genes by analysis of functional networks in C. elegans
Q41383342Ras/MAPK Modifier Loci Revealed by eQTL in Caenorhabditis elegans
Q35882390Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856.
Q34058487Spread and transmission of bacterial pathogens in experimental populations of the nematode Caenorhabditis elegans.
Q36057856Ten years of life in compost: temporal and spatial variation of North German Caenorhabditis elegans populations.
Q48115079The Local Coexistence Pattern of Selfing Genotypes in Caenorhabditis elegans Natural Metapopulations
Q33642808The Natural Biotic Environment of Caenorhabditis elegans.
Q38389240The laboratory domestication of Caenorhabditis elegans.
Q35087389The prevalence of Caenorhabditis elegans across 1.5 years in selected North German locations: the importance of substrate type, abiotic parameters, and Caenorhabditis competitors
Q30593069Widespread genomic incompatibilities in Caenorhabditis elegans.
Q39690649Worm variation made accessible: Take your shopping cart to store, link, and investigate!
Q92794696WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans
Q30692701WormQTLHD--a web database for linking human disease to natural variation data in C. elegans

Search more.