Genetical Genomics Reveals Large Scale Genotype-By-Environment Interactions in Arabidopsis thaliana

scientific article published on January 2012

Genetical Genomics Reveals Large Scale Genotype-By-Environment Interactions in Arabidopsis thaliana is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.3389/FGENE.2012.00317
P932PMC publication ID3541481
P698PubMed publication ID23335938
P5875ResearchGate publication ID234704873

P50authorGuido Van den AckervekenQ46560471
Basten SnoekQ42616823
P2093author name stringAnton J M Peeters
Guido Van den Ackerveken
Inez R Terpstra
René Dekter
P2860cites workThe pattern of polymorphism in Arabidopsis thalianaQ21146096
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Using GOstats to test gene lists for GO term associationQ29615168
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Orchestrated transcription of key pathways in Arabidopsis by the circadian clockQ29622876
Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development.Q30440986
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How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different resultsQ31034412
Mapping determinants of gene expression plasticity by genetical genomics in C. elegansQ33267908
Gene-environment interaction in yeast gene expressionQ33328631
Transient genotype-by-environment interactions following environmental shock provide a source of expression variation for essential genesQ33688918
Network analysis identifies ELF3 as a QTL for the shade avoidance response in ArabidopsisQ33691465
GIGANTEA acts in blue light signaling and has biochemically separable roles in circadian clock and flowering time regulationQ43484675
The E3 ubiquitin ligase SCFTIR1/AFB and membrane sterols play key roles in auxin regulation of endocytosis, recycling, and plasma membrane accumulation of the auxin efflux transporter PIN2 in Arabidopsis thalianaQ44086162
Rhythmic growth explained by coincidence between internal and external cues.Q44764169
Regulatory network identification by genetical genomics: signaling downstream of the Arabidopsis receptor-like kinase ERECTA.Q44852095
Auxin-induced, SCF(TIR1)-mediated poly-ubiquitination marks AUX/IAA proteins for degradation.Q44947807
Auxin-induced reactive oxygen species production requires the activation of phosphatidylinositol 3-kinaseQ45264626
Ethylene-induced differential growth of petioles in Arabidopsis. Analyzing natural variation, response kinetics, and regulation.Q45280708
Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expressionQ46184417
A genomic analysis of the shade avoidance response in ArabidopsisQ46274768
Blue-light-mediated shade avoidance requires combined auxin and brassinosteroid action in Arabidopsis seedlings.Q50279206
Auxin and ethylene regulate elongation responses to neighbor proximity signals independent of gibberellin and della proteins in Arabidopsis.Q50454286
Phototropins promote plant growth in response to blue light in low light environments.Q50485713
RPT2. A signal transducer of the phototropic response in Arabidopsis.Q50514304
Keeping up with the neighbours: phytochrome sensing and other signalling mechanisms.Q50518905
Involvement of auxin and brassinosteroid in the regulation of petiole elongation under the shade.Q50575344
Benchmarking the CATMA microarray. A novel tool for Arabidopsis transcriptome analysis.Q51540622
Gating of the rapid shade-avoidance response by the circadian clock in plants.Q52096420
Genetical genomics: the added value from segregation.Q52133626
Loss of the CONSTITUTIVE PHOTOMORPHOGENIC9 signalosome subunit 5 is sufficient to cause the cop/det/fus mutant phenotype in Arabidopsis.Q53673743
The Arabidopsis protein kinase Pto-interacting 1-4 is a common target of the oxidative signal-inducible 1 and mitogen-activated protein kinases.Q54616736
System-wide molecular evidence for phenotypic buffering in ArabidopsisQ57016845
Genome-wide scan reveals that genetic variation for transcriptional plasticity in yeast is biased towards multi-copy and dispensable genesQ57202958
Development of an AFLP based linkage map of Ler, Col and Cvi Arabidopsis thaliana ecotypes and construction of a Ler/Cvi recombinant inbred line populationQ57326580
The Arabidopsis protein kinase PTI1-2 is activated by convergent phosphatidic acid and oxidative stress signaling pathways downstream of PDK1 and OXI1Q79240152
Athena: a resource for rapid visualization and systematic analysis of Arabidopsis promoter sequencesQ81349162
The phosphoproteome of Arabidopsis plants lacking the oxidative signal-inducible1 (OXI1) protein kinaseQ82981907
Shade avoidanceQ94701539
Plant phenotypic plasticity in a changing climate.Q33726427
The landscape of genetic complexity across 5,700 gene expression traits in yeastQ33818641
Systematic detection of polygenic cis-regulatory evolutionQ33869502
Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock.Q34085869
Global genetic robustness of the alternative splicing machinery in Caenorhabditis elegansQ34131586
Unraveling the regulatory mechanisms underlying tissue-dependent genetic variation of gene expressionQ34139984
A dynamic balance between gene activation and repression regulates the shade avoidance response in ArabidopsisQ34227033
A gradient of auxin and auxin-dependent transcription precedes tropic growth responsesQ34248235
Reactive oxygen species as intracellular messengers during cell growth and differentiationQ34339532
Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'.Q34394474
Genetical genomics analysis of a yeast segregant population for transcription network inferenceQ34575557
Quantitative trait Loci analysis using the false discovery rateQ34589712
Genome-wide gene expression regulation as a function of genotype and age in C. elegans.Q34619782
Genetic architecture of regulatory variation in Arabidopsis thalianaQ34867880
Differential petiole growth in Arabidopsis thaliana: photocontrol and hormonal regulation.Q34989265
Cryptochrome 1 and phytochrome B control shade-avoidance responses in Arabidopsis via partially independent hormonal cascadesQ35103293
Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci.Q35616354
Development of a near-isogenic line population of Arabidopsis thaliana and comparison of mapping power with a recombinant inbred line populationQ35641533
Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in ArabidopsisQ35730032
The role of reactive oxygen species in cell growth: lessons from root hairsQ36486873
COP1 and ELF3 control circadian function and photoperiodic flowering by regulating GI stabilityQ37117372
Higher plants use LOV to perceive blue light.Q37302347
The many functions of ERECTA.Q37419751
The COP9 signalosome and its role in plant developmentQ37662889
Stress homeostasis - the redox and auxin perspectiveQ37858613
A new CULLIN 1 mutant has altered responses to hormones and light in ArabidopsisQ38507732
Membrane-associated transcripts in Arabidopsis; their isolation and characterization by DNA microarray analysis and bioinformaticsQ38518539
A protein kinase target of a PDK1 signalling pathway is involved in root hair growth in ArabidopsisQ39320683
Modulation of phototropic responsiveness in Arabidopsis through ubiquitination of phototropin 1 by the CUL3-Ring E3 ubiquitin ligase CRL3(NPH3).Q39459533
Optimal design and analysis of genetic studies on gene expression.Q40364344
COP9 signalosome- and 26S proteasome-dependent regulation of SCFTIR1 accumulation in Arabidopsis.Q41790530
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in ArabidopsisQ41813918
Aging Uncouples Heritability and Expression-QTL in Caenorhabditis elegansQ41958461
OXI1 kinase is necessary for oxidative burst-mediated signalling in ArabidopsisQ42457720
Simultaneous suppression of three genes related to brassinosteroid (BR) biosynthesis altered campesterol and BR contents, and led to a dwarf phenotype in Arabidopsis thalianaQ43156910
P4510describes a project that useslimmaQ112236343
P921main subjectArabidopsis thalianaQ158695
genomicsQ222046
P304page(s)317
P577publication date2012-01-01
P1433published inFrontiers in GeneticsQ2499875
P1476titleGenetical Genomics Reveals Large Scale Genotype-By-Environment Interactions in Arabidopsis thaliana
P478volume3

Reverse relations

cites work (P2860)
Q47135629Construction of a High-Density Genetic Map from RNA-Seq Data for an Arabidopsis Bay-0 × Shahdara RIL Population.
Q32175942Contribution of trans regulatory eQTL to cryptic genetic variation in C. elegans.
Q39191485Expression quantitative trait locus mapping across water availability environments reveals contrasting associations with genomic features in Arabidopsis.
Q34956179Gene-environment and protein-degradation signatures characterize genomic and phenotypic diversity in wild Caenorhabditis elegans populations
Q41380862Genetic Dissection of Morphometric Traits Reveals That Phytochrome B Affects Nucleus Size and Heterochromatin Organization in Arabidopsis thaliana.
Q38948366Leaf Growth Response to Mild Drought: Natural Variation in Arabidopsis Sheds Light on Trait Architecture.
Q47108795Metabolomic analysis of tomato seed germination
Q36876119Natural Genetic Variation Differentially Affects the Proteome and Transcriptome in Caenorhabditis elegans.
Q36243357On predicting regulatory genes by analysis of functional networks in C. elegans
Q37636375PAPE (Prefractionation-Assisted Phosphoprotein Enrichment): A Novel Approach for Phosphoproteomic Analysis of Green Tissues from Plants
Q41383342Ras/MAPK Modifier Loci Revealed by eQTL in Caenorhabditis elegans
Q36059208Transcriptome sequencing reveals the roles of transcription factors in modulating genotype by nitrogen interaction in maize
Q30593069Widespread genomic incompatibilities in Caenorhabditis elegans.
Q92794696WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans
Q30692701WormQTLHD--a web database for linking human disease to natural variation data in C. elegans

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