| scholarly article | Q13442814 |
| P819 | ADS bibcode | 1995PNAS...92.1684A |
| P356 | DOI | 10.1073/PNAS.92.5.1684 |
| P932 | PMC publication ID | 42584 |
| P698 | PubMed publication ID | 7878040 |
| P5875 | ResearchGate publication ID | 15321268 |
| P2093 | author name string | Brenner S | |
| Krumlauf R | |||
| Aparicio S | |||
| Morrison A | |||
| Gould A | |||
| Rigby P | |||
| Chaudhuri C | |||
| Gilthorpe J | |||
| P2860 | cites work | DNA sequencing with chain-terminating inhibitors | Q22066207 |
| Genomic sequencing | Q24594942 | ||
| Homeobox genes and axial patterning | Q28181571 | ||
| CLUSTAL: a package for performing multiple sequence alignment on a microcomputer | Q28293854 | ||
| The zinc finger gene Krox20 regulates HoxB2 (Hox2.8) during hindbrain segmentation | Q28505421 | ||
| Hox genes in vertebrate development | Q29618109 | ||
| Regulatory elements involved in Drosophila Adh gene expression are conserved in divergent species and separate elements mediate expression in different tissues | Q33879902 | ||
| The Adh gene promoters of Drosophila melanogaster and Drosophila orena are functionally conserved and share features of sequence structure and nuclease-protected sites | Q34148395 | ||
| A short 5'-flanking DNA region is sufficient for developmentally correct expression of moth chorion genes in Drosophila. | Q34365404 | ||
| An interactive graphics program for comparing and aligning nucleic acid and amino acid sequences | Q35507331 | ||
| Muscle differentiation | Q35659703 | ||
| Patterning in the vertebrate limb | Q36552546 | ||
| Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome | Q36754912 | ||
| Evolutionary genetics of fish | Q36885079 | ||
| Hox and HOM: homologous gene clusters in insects and vertebrates | Q38348792 | ||
| Evolution of a regulatory gene family: HOM/HOX genes | Q40621353 | ||
| The structural and functional organization of the murine HOX gene family resembles that of Drosophila homeotic genes | Q40817918 | ||
| Structure and activity of regulatory elements involved in the activation of the Hoxd-11 gene during late gastrulation. | Q40873851 | ||
| Regulatory elements controlling chorion gene expression are conserved between flies and moths | Q42075643 | ||
| Are cross-regulatory interactions between homoeotic genes functionally significant? | Q44387965 | ||
| A conserved retinoic acid response element required for early expression of the homeobox gene Hoxb-1. | Q52215015 | ||
| Characterization of a murine homeo box gene, Hox-2.6, related to the Drosophila Deformed gene. | Q52452367 | ||
| Optimal sequence alignment using affine gap costs | Q56456148 | ||
| Specific activation of mammalian Hox promoters in mosaic transgenic zebrafish | Q67515319 | ||
| Multiple spatially specific enhancers are required to reconstruct the pattern of Hox-2.6 gene expression | Q68321893 | ||
| Hoxb-4 (Hox-2.6) mutant mice show homeotic transformation of a cervical vertebra and defects in the closure of the sternal rudiments | Q72216655 | ||
| P433 | issue | 5 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | fish | Q152 |
| Fugu rubripes | Q107054404 | ||
| P304 | page(s) | 1684-1688 | |
| P577 | publication date | 1995-02-01 | |
| P1433 | published in | Proceedings of the National Academy of Sciences of the United States of America | Q1146531 |
| P1476 | title | Detecting conserved regulatory elements with the model genome of the Japanese puffer fish, Fugu rubripes | |
| P478 | volume | 92 |
| Q33787929 | 'Shocking' developments in chick embryology: electroporation and in ovo gene expression |
| Q35679694 | A Simple Predictive Enhancer Syntax for Hindbrain Patterning Is Conserved in Vertebrate Genomes |
| Q34607539 | A functional role for some Fugu introns larger than the typical short ones: the example of the gene coding for ribosomal protein S7 and snoRNA U17. |
| Q35874195 | A liver enhancer in the fibrinogen gene cluster |
| Q42059367 | A novel approach to identifying regulatory motifs in distantly related genomes |
| Q52194684 | A sequence conserved in vertebrate Hox gene introns functions as an enhancer regulated by posterior homeotic genes in Drosophila imaginal discs. |
| Q41084183 | Aberrant processing of the Fugu HD (FrHD) mRNA in mouse cells and in transgenic mice |
| Q33968013 | Algebraic distribution of segmental duplication lengths in whole-genome sequence self-alignments |
| Q28730815 | An ancient genomic regulatory block conserved across bilaterians and its dismantling in tetrapods by retrogene replacement |
| Q35021694 | Analysis of 148 kb of genomic DNA around the wnt1 locus of Fugu rubripes. |
| Q48037975 | Analysis of pufferfish homologues of the AT-rich human APP gene |
| Q24793605 | Analysis of the conservation of synteny between Fugu and human chromosome 12 |
| Q28143951 | Analysis of vertebrate SCL loci identifies conserved enhancers |
| Q34114376 | Ancient Pbx-Hox signatures define hundreds of vertebrate developmental enhancers |
| Q35766840 | Applied bioinformatics for the identification of regulatory elements |
| Q21267236 | Asymmetrical distribution of non-conserved regulatory sequences at PHOX2B is reflected at the ENCODE loci and illuminates a possible genome-wide trend |
| Q81154646 | Automated analysis of conserved syntenies for the zebrafish genome |
| Q58757860 | CNEFinder: finding conserved non-coding elements in genomes |
| Q40431723 | CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting |
| Q28291198 | ChIP-Seq identification of weakly conserved heart enhancers |
| Q40962295 | Characterization of the transcription factor MTF-1 from the Japanese pufferfish (Fugu rubripes) reveals evolutionary conservation of heavy metal stress response |
| Q45917144 | Cis-regulatory characterization of sequence conservation surrounding the Hox4 genes. |
| Q48022200 | Cloning and sequencing of the CRABP-I locus from chicken and pufferfish: analysis of the promoter regions in transgenic mice |
| Q34426615 | Coevolution within and between regulatory loci can preserve promoter function despite evolutionary rate acceleration |
| Q37237329 | Combinations of closely situated cis-acting elements determine tissue-specific patterns and anterior extent of early Hoxc8 expression |
| Q30664860 | Combining Hi-C data with phylogenetic correlation to predict the target genes of distal regulatory elements in human genome |
| Q44714783 | Compact intergenic regions of the pufferfish genome facilitate isolation of gene promoters: characterization of Fugu 3'-phosphoadenosine 5'-phosphosulfate synthase 2 (fPapss2) gene promoter function in transgenic Xenopus |
| Q40952719 | Comparative Analysis of Vertebrate Dystrophin Loci Indicate Intron Gigantism as a Common Feature |
| Q42653078 | Comparative analysis of the ETV6 gene in vertebrate genomes from pufferfish to human. |
| Q29614229 | Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster |
| Q35778678 | Comparative genomics at the vertebrate extremes |
| Q36021378 | Comparative genomics reveals functional transcriptional control sequences in the Prop1 gene |
| Q34187800 | Comparative genomics: genome-wide analysis in metazoan eukaryotes |
| Q28776337 | Comparative studies on mammalian Hoxc8 early enhancer sequence reveal a baleen whale-specific deletion of a cis-acting element |
| Q36636733 | Complete sequencing of the Fugu WAGR region from WT1 to PAX6: dramatic compaction and conservation of synteny with human chromosome 11p13. |
| Q35171756 | Computational identification of active enhancers in model organisms |
| Q24568149 | Computational prediction of transcription-factor binding site locations |
| Q41010589 | ConSite: web-based prediction of regulatory elements using cross-species comparison |
| Q37714624 | Conservation of synteny between the genome of the pufferfish (Fugu rubripes) and the region on human chromosome 14 (14q24.3) associated with familial Alzheimer disease (AD3 locus) |
| Q47112088 | Conserved non-coding elements: developmental gene regulation meets genome organization |
| Q34015319 | Conserved regulation of the lymphocyte-specific expression of lck in the Fugu and mammals |
| Q73857884 | Cytogenetic analysis of the pufferfish Tetraodon fluviatilis (Osteichthyes) |
| Q77630835 | Cytogenetic and molecular analysis of the pufferfish Tetraodon fluviatilis (Osteichthyes) |
| Q36840829 | Decoding development in Xenopus tropicalis |
| Q38161887 | Deep conservation of cis-regulatory elements in metazoans |
| Q36567604 | Directing gene expression to cerebellar granule cells using gamma-aminobutyric acid type A receptor alpha6 subunit transgenes. |
| Q35748712 | Discovering transcriptional regulatory regions in Drosophila by a nonalignment method for phylogenetic footprinting |
| Q33840250 | Discovery and modeling of transcriptional regulatory regions |
| Q33926832 | Distinct functional constraints partition sequence conservation in a cis-regulatory element |
| Q37364152 | Elephant shark (Callorhinchus milii) provides insights into the evolution of Hox gene clusters in gnathostomes |
| Q35757841 | Enhancer identification through comparative genomics |
| Q52039929 | Evolution of functionally conserved enhancers can be accelerated in large populations: a population-genetic model. |
| Q33676853 | Evolutionary conservation of regulatory elements in vertebrate Hox gene clusters |
| Q39983560 | Experimental validation of predicted mammalian erythroid cis-regulatory modules |
| Q35728277 | Expression profiling and comparative genomics identify a conserved regulatory region controlling midline expression in the zebrafish embryo |
| Q24804428 | Extreme conservation of noncoding DNA near HoxD complex of vertebrates |
| Q39758710 | Faithful expression of a tagged Fugu WT1 protein from a genomic transgene in zebrafish: efficient splicing of pufferfish genes in zebrafish but not mice |
| Q24796408 | Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach |
| Q33287630 | Finding cis-regulatory elements using comparative genomics: some lessons from ENCODE data |
| Q28202090 | Fugu and human sequence comparison identifies novel human genes and conserved non-coding sequences |
| Q60085662 | Fugu genome is not a good mammalian model |
| Q33957062 | Fugu: a compact vertebrate reference genome |
| Q38606028 | Functional diversification of sonic hedgehog paralog enhancers identified by phylogenomic reconstruction |
| Q34157214 | Genome-wide enhancer prediction from epigenetic signatures using genetic algorithm-optimized support vector machines. |
| Q35251281 | Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns |
| Q48295224 | Genomic characterization of the RUNX2 gene of Fugu rubripes |
| Q41071284 | Genomic organization and characterization of the promoter region of the round-spotted pufferfish (Tetraodon fluviatilis) JAK1 kinase gene |
| Q40414290 | Genomic sequence analysis of Fugu rubripes CFTR and flanking genes in a 60 kb region conserving synteny with 800 kb of human chromosome 7. |
| Q22122210 | Genomic views of distant-acting enhancers |
| Q39596997 | Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development |
| Q73844431 | How to count ... human genes |
| Q34328982 | Hox gene clusters in the Indonesian coelacanth, Latimeria menadoensis |
| Q28592263 | Hoxb-2 transcriptional activation in rhombomeres 3 and 5 requires an evolutionarily conserved cis-acting element in addition to the Krox-20 binding site |
| Q52048975 | Identification of a conserved 125 base-pair Hb9 enhancer that specifies gene expression to spinal motor neurons. |
| Q33341337 | Identification of a new pebp2alphaA2 isoform from zebrafish runx2 capable of inducing osteocalcin gene expression in vitro. |
| Q48041495 | Identification of an achaete-scute homolog, Fash1, from Fugu rubripes |
| Q34417560 | In vivo characterization of a vertebrate ultraconserved enhancer |
| Q47713097 | Initiation of rhombomeric Hoxb4 expression requires induction by somites and a retinoid pathway. |
| Q35202514 | Insights from human/mouse genome comparisons |
| Q28202315 | Intron loss in the SART1 genes of Fugu rubripes and Tetraodon nigroviridis |
| Q30755031 | Isolation and characterisation of the retinoic acid receptor-alpha gene in the Japanese pufferfish, F. rubripes |
| Q48039226 | Isolation and genomic characterization of the TUPLE1/HIRA gene of the pufferfish Fugu rubripes |
| Q38477081 | Locus-specific biochemical epigenetics/chromatin biochemistry by insertional chromatin immunoprecipitation |
| Q40414748 | Long-range comparison of human and mouse SCL loci: localized regions of sensitivity to restriction endonucleases correspond precisely with peaks of conserved noncoding sequences |
| Q36224691 | Mapping of complex regulatory elements by pufferfish/zebrafish transgenesis |
| Q36255064 | Marine organism cell biology and regulatory sequence discoveryin comparative functional genomics. |
| Q37310328 | Meis1 regulates Foxn4 expression during retinal progenitor cell differentiation |
| Q52110239 | Methylation of HoxA5 and HoxB5 and its relevance to expression during mouse development. |
| Q42239743 | Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b |
| Q35915485 | Modification of expression and cis-regulation of Hoxc8 in the evolution of diverged axial morphology |
| Q47822200 | Molecular cloning and characterization of the Fugu rubripes MEST/COPG2 imprinting cluster and chromosomal localization in Fugu and Tetraodon nigroviridis. |
| Q48040987 | Molecular evolution of Hox gene regulation: cloning and transgenic analysis of the lamprey HoxQ8 gene |
| Q44450318 | Molecular structure and developmental expression of three muscle-type troponin T genes in zebrafish |
| Q40005750 | Negative-feedback regulation of FGF signalling by DUSP6/MKP-3 is driven by ERK1/2 and mediated by Ets factor binding to a conserved site within the DUSP6/MKP-3 gene promoter |
| Q48685527 | New 3' elements control Pax6 expression in the developing pretectum, neural retina and olfactory region |
| Q37087609 | Organization of conserved elements near key developmental regulators in vertebrate genomes |
| Q48050607 | Organization of the Fugu rubripes Hox clusters: evidence for continuing evolution of vertebrate Hox complexes |
| Q27311039 | Phylum-Level Conservation of Regulatory Information in Nematodes despite Extensive Non-coding Sequence Divergence |
| Q40957100 | Quality not quantity: the pufferfish genome |
| Q46460582 | R11: a cis-regulatory node of the sea urchin embryo gene network that controls early expression of SpDelta in micromeres |
| Q33836625 | Recognition of regulatory sites by genomic comparison. |
| Q36234449 | Regulation of the stem cell leukemia (SCL) gene: a tale of two fishes |
| Q38084612 | Regulatory genomics: Insights from the zebrafish |
| Q49082992 | Reprogramming Hox expression in the vertebrate hindbrain: influence of paraxial mesoderm and rhombomere transposition |
| Q37774416 | Retracted: Gene duplication and functional evolution of Hox genes in fishes |
| Q33351962 | SNP and mutation data on the web - hidden treasures for uncovering |
| Q41515830 | Searching for regulatory elements in human noncoding sequences. |
| Q38644036 | Segmental arithmetic: summing up the Hox gene regulatory network for hindbrain development in chordates. |
| Q33888526 | Selectivity, sharing and competitive interactions in the regulation of Hoxb genes |
| Q41852340 | Shuffling of cis-regulatory elements is a pervasive feature of the vertebrate lineage |
| Q73405750 | So many genomes, so little time |
| Q38328628 | Structures, sequence characteristics, and synteny relationships of the transcription factor E4TF1, the splicing factor U2AF35 and the cystathionine beta synthetase genes from Fugu rubripes |
| Q94515540 | Sydney Brenner—a personal perspective |
| Q34145702 | Tempo and mode in evolution of transcriptional regulation |
| Q28748553 | The European sea bass Dicentrarchus labrax genome puzzle: comparative BAC-mapping and low coverage shotgun sequencing |
| Q73266361 | The Fugu rubripes tyrosinase gene promoter targets transgene expression to pigment cells in the mouse |
| Q52190946 | The Yin and Yang of Evo/Devo. |
| Q37348589 | The conserved role of Krox-20 in directing Hox gene expression during vertebrate hindbrain segmentation. |
| Q44319351 | The role of a retinoic acid response element in establishing the anterior neural expression border of Hoxd4 transgenes. |
| Q47073478 | The words of the regulatory code are arranged in a variable manner in highly conserved enhancers. |
| Q36282643 | Towards quantitative biology: integration of biological information to elucidate disease pathways and to guide drug discovery |
| Q39935609 | Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif. |
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| Q24672716 | Transcriptional regulation of the stem cell leukemia gene (SCL)--comparative analysis of five vertebrate SCL loci |
| Q24648044 | Transgenic rats reveal functional conservation of regulatory controls between the Fugu isotocin and rat oxytocin genes |
| Q38212123 | Understanding the Dynamics of Gene Regulatory Systems; Characterisation and Clinical Relevance of cis-Regulatory Polymorphisms |
| Q28647431 | What does it take to evolve an enhancer? A simulation-based study of factors influencing the emergence of combinatorial regulation |
| Q22065769 | What fraction of the human genome is functional? |
| Q37815869 | When needles look like hay: how to find tissue-specific enhancers in model organism genomes |
| Q40431681 | Whole-genome discovery of transcription factor binding sites by network-level conservation |
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