| scholarly article | Q13442814 |
| P50 | author | Hsiao-Lin Wang | Q82806334 |
| Julia A Chekanova | Q56908599 | ||
| P2093 | author name string | Jinwon Lee | |
| Dmitry A Belostotsky | |||
| Jun-Hye Shin | |||
| Brandon L Dinwiddie | |||
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| Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3' end formation | Q27933100 | ||
| A single subunit, Dis3, is essentially responsible for yeast exosome core activity | Q27935552 | ||
| Two classes of short interfering RNA in RNA silencing | Q28219196 | ||
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| A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression | Q29614326 | ||
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| RNA maps reveal new RNA classes and a possible function for pervasive transcription | Q29614334 | ||
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| Genome-wide transcription and the implications for genomic organization | Q29617047 | ||
| Modular regulatory principles of large non-coding RNAs | Q29617829 | ||
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| Endogenous targets of transcriptional gene silencing in Arabidopsis | Q30651906 | ||
| Poly(A) tail-dependent exonuclease AtRrp41p from Arabidopsis thaliana rescues 5.8 S rRNA processing and mRNA decay defects of the yeast ski6 mutant and is found in an exosome-sized complex in plant and yeast cells | Q30896877 | ||
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| A structural-maintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation. | Q33345476 | ||
| RNA-directed DNA methylation and plant development require an IWR1-type transcription factor | Q33348333 | ||
| Metal A and metal B sites of nuclear RNA polymerases Pol IV and Pol V are required for siRNA-dependent DNA methylation and gene silencing | Q33396922 | ||
| A Pol V-mediated silencing, independent of RNA-directed DNA methylation, applies to 5S rDNA | Q33510909 | ||
| Transduction of RNA-directed DNA methylation signals to repressive histone marks in Arabidopsis thaliana | Q33518414 | ||
| Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis | Q33565883 | ||
| Splicing factor Spf30 assists exosome-mediated gene silencing in fission yeast | Q33648862 | ||
| MOM1 and Pol-IV/V interactions regulate the intensity and specificity of transcriptional gene silencing | Q33668103 | ||
| RNA silencing genes control de novo DNA methylation | Q44664989 | ||
| A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster | Q46210954 | ||
| The Arabidopsis LHP1 protein colocalizes with histone H3 Lys27 trimethylation | Q46284083 | ||
| Widespread role for the flowering-time regulators FCA and FPA in RNA-mediated chromatin silencing | Q46966166 | ||
| Disruption of the plant gene MOM releases transcriptional silencing of methylated genes | Q47859676 | ||
| Arabidopsis RNA immunoprecipitation | Q47870963 | ||
| Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome | Q48075748 | ||
| Atypical RNA polymerase subunits required for RNA-directed DNA methylation | Q48136173 | ||
| Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation | Q48146967 | ||
| Identification and structural analysis of SINE elements in the Arabidopsis thaliana genome | Q48341767 | ||
| Cotranscriptional role for Arabidopsis DICER-LIKE 4 in transcription termination. | Q51798265 | ||
| Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs. | Q52043494 | ||
| A link between mRNA turnover and RNA interference in Arabidopsis. | Q52085930 | ||
| Analysis of large-scale sequencing of small RNAs. | Q52688076 | ||
| Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis | Q33717033 | ||
| An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation. | Q33833568 | ||
| Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions | Q33860348 | ||
| RNA polymerase IV directs silencing of endogenous DNA. | Q33984841 | ||
| The ERI-6/7 helicase acts at the first stage of an siRNA amplification pathway that targets recent gene duplications | Q34079187 | ||
| Depletion of MOM1 in non-dividing cells of Arabidopsis plants releases transcriptional gene silencing | Q34196181 | ||
| Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing | Q34202641 | ||
| Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide | Q34308999 | ||
| Dicer-independent primal RNAs trigger RNAi and heterochromatin formation | Q34487325 | ||
| Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis. | Q34766925 | ||
| Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution | Q34779368 | ||
| Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes | Q34881670 | ||
| Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis | Q35056695 | ||
| Defects in RNA quality control factors reveal RNAi-independent nucleation of heterochromatin. | Q35301089 | ||
| TRAMP-mediated RNA surveillance prevents spurious entry of RNAs into the Schizosaccharomyces pombe siRNA pathway | Q35618796 | ||
| Epigenetic regulation of transcription in intermediate heterochromatin | Q35630497 | ||
| MOM1 mediates DNA-methylation-independent silencing of repetitive sequences in Arabidopsis | Q35630519 | ||
| Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing | Q35691341 | ||
| Different means, same end-heterochromatin formation by RNAi and RNAi-independent RNA processing factors in fission yeast | Q35903171 | ||
| MORC family ATPases required for heterochromatin condensation and gene silencing. | Q36035505 | ||
| Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome | Q36186371 | ||
| Air proteins control differential TRAMP substrate specificity for nuclear RNA surveillance | Q36246643 | ||
| Global role for polyadenylation-assisted nuclear RNA degradation in posttranscriptional gene silencing | Q36421393 | ||
| Degradation of a polyadenylated rRNA maturation by-product involves one of the three RRP6-like proteins in Arabidopsis thaliana | Q36540208 | ||
| Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression | Q37287376 | ||
| Exosome complex and pervasive transcription in eukaryotic genomes | Q37495145 | ||
| Gene-specific and genome-wide ChIP approaches to study plant transcriptional networks | Q37545616 | ||
| Inverted repeat structure of the human genome: the X-chromosome contains a preponderance of large, highly homologous inverted repeats that contain testes genes | Q37593039 | ||
| The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs | Q37634306 | ||
| Arabidopsis RPA2: a genetic link among transcriptional gene silencing, DNA repair, and DNA replication. | Q38319121 | ||
| Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis. | Q41807998 | ||
| RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats. | Q41827307 | ||
| RNA polymerase V functions in Arabidopsis interphase heterochromatin organization independently of the 24-nt siRNA-directed DNA methylation pathway | Q41886972 | ||
| Transcriptome-wide analysis of exosome targets | Q42421964 | ||
| Transcription termination and RNA degradation contribute to silencing of RNA polymerase II transcription within heterochromatin | Q42524806 | ||
| HP1(Swi6) mediates the recognition and destruction of heterochromatic RNA transcripts | Q43908593 | ||
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 3 | |
| P304 | page(s) | e1003411 | |
| P577 | publication date | 2013-03-28 | |
| P1433 | published in | PLOS Genetics | Q1893441 |
| P1476 | title | The role of the Arabidopsis Exosome in siRNA-independent silencing of heterochromatic loci | |
| P478 | volume | 9 |
| Q37415525 | A Dicer-Independent Route for Biogenesis of siRNAs that Direct DNA Methylation in Arabidopsis. |
| Q41737028 | Accessible DNA and relative depletion of H3K9me2 at maize loci undergoing RNA-directed DNA methylation |
| Q33623094 | An Rrp6-like protein positively regulates noncoding RNA levels and DNA methylation in Arabidopsis. |
| Q37288767 | Arabidopsis AtRRP44A is the functional homolog of Rrp44/Dis3, an exosome component, is essential for viability and is required for RNA processing and degradation |
| Q35247789 | Arabidopsis RRP6L1 and RRP6L2 function in FLOWERING LOCUS C silencing via regulation of antisense RNA synthesis. |
| Q91595909 | LSM2-8 and XRN-2 contribute to the silencing of H3K27me3-marked genes through targeted RNA decay |
| Q47942898 | Long Noncoding RNAs in Plants. |
| Q91329955 | Proteasome subunit RPT2a promotes PTGS through repressing RNA quality control in Arabidopsis |
| Q40709822 | RNA Exosome Complex Regulates Stability of the Hepatitis B Virus X-mRNA Transcript in a Non-stop-mediated (NSD) RNA Quality Control Mechanism |
| Q47279037 | RNA degradation by the plant RNA exosome involves both phosphorolytic and hydrolytic activities |
| Q35597360 | RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity. |
| Q48148054 | Repressive Chromatin in Caenorhabditis elegans: Establishment, Composition, and Function |
| Q40098938 | Selective termination of lncRNA transcription promotes heterochromatin silencing and cell differentiation |
| Q35113601 | Stress-induced endogenous siRNAs targeting regulatory intron sequences in Brachypodium. |
| Q40550445 | TMV induces RNA decay pathways to modulate gene silencing and disease symptoms. |
| Q35662465 | The Complexity of Posttranscriptional Small RNA Regulatory Networks Revealed by In Silico Analysis of Gossypium arboreum L. Leaf, Flower and Boll Small Regulatory RNAs |
| Q28542463 | The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thaliana |
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