Long Noncoding RNAs in Plants.

scientific article published in January 2017

Long Noncoding RNAs in Plants. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1007/978-981-10-5203-3_5
P932PMC publication ID6689229
P698PubMed publication ID28815539

P50authorJulia A ChekanovaQ56908599
Hsiao-Lin WangQ82806334
P2093author name stringJulia A Chekanova
Hsiao-Lin V Wang
P2860cites workXUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast.Q51547969
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The timing of floweringQ85156243
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A long noncoding RNA maintains active chromatin to coordinate homeotic gene expressionQ29614326
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Long noncoding RNA modulates alternative splicing regulators in ArabidopsisQ33358858
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Vernalization-repression of Arabidopsis FLC requires promoter sequences but not antisense transcripts.Q33945414
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Activating RNAs associate with Mediator to enhance chromatin architecture and transcriptionQ34328232
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Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of riceQ34622310
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Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genesQ34881670
Detection of Pol IV/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesisQ35042967
RNA-directed DNA methylation requires stepwise binding of silencing factors to long non-coding RNAQ35062468
Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in ArabidopsisQ35141855
RNA-mediated epigenetic regulation of gene expressionQ35223649
Arabidopsis RRP6L1 and RRP6L2 function in FLOWERING LOCUS C silencing via regulation of antisense RNA synthesis.Q35247789
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Defects in RNA quality control factors reveal RNAi-independent nucleation of heterochromatin.Q35301089
RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity.Q35597360
TRAMP-mediated RNA surveillance prevents spurious entry of RNAs into the Schizosaccharomyces pombe siRNA pathwayQ35618796
PlantNATsDB: a comprehensive database of plant natural antisense transcriptsQ35630997
Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencingQ35691341
A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid riceQ35787178
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Chromatin in 3D: progress and prospects for plantsQ35986660
MORC family ATPases required for heterochromatin condensation and gene silencing.Q36035505
Systematic characterization of novel lncRNAs responding to phosphate starvation in Arabidopsis thalianaQ36107248
Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenomeQ36186371
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DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposonsQ36236706
Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in ArabidopsisQ36473880
A SWI/SNF chromatin-remodeling complex acts in noncoding RNA-mediated transcriptional silencingQ36575265
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A One Precursor One siRNA Model for Pol IV-Dependent siRNA BiogenesisQ37255804
Long non-coding RNA produced by RNA polymerase V determines boundaries of heterochromatin.Q37365571
Nascent RNA sequencing reveals distinct features in plant transcriptionQ37379794
RNA polymerase V targets transcriptional silencing components to promoters of protein-coding genesQ37394871
R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus.Q37485722
The SET domain proteins SUVH2 and SUVH9 are required for Pol V occupancy at RNA-directed DNA methylation lociQ37504640
Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in ArabidopsisQ37614942
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Environmental perception and epigenetic memory: mechanistic insight through FLC.Q38452102
Functional consequences of splicing of the antisense transcript COOLAIR on FLC transcriptionQ38787179
R-loops induce repressive chromatin marks over mammalian gene terminatorsQ38949719
Characterization of stress-responsive lncRNAs in Arabidopsis thaliana by integrating expression, epigenetic and structural featuresQ38972100
Genome-wide analysis reveals distinct substrate specificities of Rrp6, Dis3, and core exosome subunitsQ39773502
Genome-wide analysis of chromatin packing in Arabidopsis thaliana at single-gene resolution.Q40377230
Interplay among RNA polymerases II, IV and V in RNA-directed DNA methylation at a low copy transgene locus in Arabidopsis thaliana.Q40460087
Genome-Wide Prediction and Validation of Intergenic Enhancers in Arabidopsis Using Open Chromatin Signatures.Q40536525
RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats.Q41827307
Physical clustering of FLC alleles during Polycomb-mediated epigenetic silencing in vernalizationQ42641564
A gene loop containing the floral repressor FLC is disrupted in the early phase of vernalizationQ42733263
High-Resolution Expression Map of the Arabidopsis Root Reveals Alternative Splicing and lincRNA RegulationQ42774916
Genome-wide analysis of local chromatin packing in Arabidopsis thaliana.Q43129173
Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb targetQ45101053
COOLAIR Antisense RNAs Form Evolutionarily Conserved Elaborate Secondary Structures.Q46487074
Genomic features and regulatory roles of intermediate-sized non-coding RNAs in Arabidopsis.Q46949898
Discovery and annotation of long noncoding RNAsQ47573961
Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptomeQ48075748
Noncoding transcription by alternative RNA polymerases dynamically regulates an auxin-driven chromatin loop.Q50649052
Widespread long noncoding RNAs as endogenous target mimics for microRNAs in plants.Q50758425
Vernalization-Triggered Intragenic Chromatin Loop Formation by Long Noncoding RNAs.Q51163996
P407language of work or nameEnglishQ1860
P1104number of pages22
P304page(s)133-154
P577publication date2017-01-01
P1433published inAdvances in Experimental Medicine and BiologyQ4686385
P1476titleLong Noncoding RNAs in Plants
P478volume1008

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cites work (P2860)
Q50280883A Genomic View of Alternative Splicing of Long Non-coding RNAs during Rice Seed Development Reveals Extensive Splicing and lncRNA Gene Families.
Q92836887An Overview of Methodologies in Studying lncRNAs in the High-Throughput Era: When Acronyms ATTACK!
Q64065188Analysis of Transcriptome and Epitranscriptome in Plants Using PacBio Iso-Seq and Nanopore-Based Direct RNA Sequencing
Q96685934Identification and characterization of long non-coding RNA (lncRNA) in the developing seeds of Jatropha curcas
Q92500873Identification of a novel anthocyanin synthesis pathway in the fungus Aspergillus sydowii H-1
Q93242351Identification of novel phasiRNAs loci on long non-coding RNAs in Arabidopsis thaliana
Q93191690Long non-coding RNA MYOSLID functions as a competing endogenous RNA to regulate MCL-1 expression by sponging miR-29c-3p in gastric cancer

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