Essential O2-responsive genes of Pseudomonas aeruginosa and their network revealed by integrating dynamic data from inverted conditions

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Essential O2-responsive genes of Pseudomonas aeruginosa and their network revealed by integrating dynamic data from inverted conditions is …
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scholarly articleQ13442814

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P356DOI10.1039/C3IB40180D
P698PubMed publication ID24413814
P5875ResearchGate publication ID259684783

P50authorJibin SunQ51418458
Padhmanand SudhakarQ56191726
Feng HeQ57206397
An-Ping ZengQ87751362
P2093author name stringWei Wang
Ping Zheng
P2860cites workEffects of reduced mucus oxygen concentration in airway Pseudomonas infections of cystic fibrosis patientsQ24551181
Wisdom of crowds for robust gene network inferenceQ24604615
The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signalQ28058215
Anaerobic growth and cyanide synthesis of Pseudomonas aeruginosa depend on anr, a regulatory gene homologous with fnr of Escherichia coliQ28492494
PsrA is a positive transcriptional regulator of the type III secretion system in Pseudomonas aeruginosaQ28492519
Responses of Pseudomonas aeruginosa to low oxygen indicate that growth in the cystic fibrosis lung is by aerobic respirationQ28492742
GeneChip expression analysis of the iron starvation response in Pseudomonas aeruginosa: identification of novel pyoverdine biosynthesis genesQ28492754
Proteomic, microarray, and signature-tagged mutagenesis analyses of anaerobic Pseudomonas aeruginosa at pH 6.5, likely representing chronic, late-stage cystic fibrosis airway conditionsQ28492782
Genetics and regulation of two distinct haem-uptake systems, phu and has, in Pseudomonas aeruginosaQ28492988
Anaerobic adaptation in Pseudomonas aeruginosa: definition of the Anr and Dnr regulonsQ28493012
Ferric uptake regulator mutants of Pseudomonas aeruginosa with distinct alterations in the iron-dependent repression of exotoxin A and siderophores in aerobic and microaerobic environmentsQ28493020
Role of the Pseudomonas aeruginosa oxyR-recG operon in oxidative stress defense and DNA repair: OxyR-dependent regulation of katB-ankB, ahpB, and ahpC-ahpFQ28493073
Three rhamnosyltransferases responsible for assembly of the A-band D-rhamnan polysaccharide in Pseudomonas aeruginosa: a fourth transferase, WbpL, is required for the initiation of both A-band and B-band lipopolysaccharide synthesisQ28493202
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Global regulation of gene expression by OxyR in an important human opportunistic pathogenQ29346771
Analysis of promoters recognized by PvdS, an extracytoplasmic-function sigma factor protein from Pseudomonas aeruginosaQ29346794
Open source clustering softwareQ29547702
Microarray analysis of Pseudomonas aeruginosa quorum-sensing regulons: effects of growth phase and environmentQ29615283
Impact of the spotted microarray preprocessing method on fold-change compression and variance stabilityQ34057623
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Reverse engineering and verification of gene networks: principles, assumptions, and limitations of present methods and future perspectives.Q37561809
Comparative transcriptome analyses of Pseudomonas aeruginosaQ37586587
Supervised, semi-supervised and unsupervised inference of gene regulatory networks.Q38288935
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Pseudomonas aeruginosa anaerobic respiration in biofilms: relationships to cystic fibrosis pathogenesis.Q40624126
Alterations in the formation of lipopolysaccharide and membrane vesicles on the surface of Pseudomonas aeruginosa PAO1 under oxygen stress conditionsQ40629376
PLAU inferred from a correlation network is critical for suppressor function of regulatory T cellsQ41900367
Modeling regulatory cascades using Artificial Neural Networks: the case of transcriptional regulatory networks shaped during the yeast stress responseQ41962991
Effect of anaerobiosis and nitrate on gene expression in Pseudomonas aeruginosaQ42754582
Iron deficiency leads to inhibition of oxygen transfer and enhanced formation of virulence factors in cultures of Pseudomonas aeruginosa PAO1.Q44569228
A module of negative feedback regulators defines growth factor signalingQ45345602
Loss of the oxidative stress regulator OxyR in Pseudomonas aeruginosa PAO1 impairs growth under iron-limited conditionsQ46215768
Expression of the phytochrome operon in Pseudomonas aeruginosa is dependent on the alternative sigma factor RpoS.Q46773178
Adaptation of E. coli cell method for micro-scale nitrate measurement with the Griess reaction in culture mediaQ49075675
Optimal sparsity criteria for network inference.Q51222483
A predictive model for transcriptional control of physiology in a free living cell.Q51897861
Functional characterization of the gene PA2384 in large-scale gene regulation in response to iron starvation in Pseudomonas aeruginosa.Q52582332
P433issue2
P921main subjectPseudomonas aeruginosaQ31856
P304page(s)215-223
P577publication date2014-02-01
P1433published inIntegrative BiologyQ1524032
P1476titleEssential O2-responsive genes of Pseudomonas aeruginosa and their network revealed by integrating dynamic data from inverted conditions
P478volume6

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