Genomic survey, gene expression analysis and structural modeling suggest diverse roles of DNA methyltransferases in legumes.

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Genomic survey, gene expression analysis and structural modeling suggest diverse roles of DNA methyltransferases in legumes. is …
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scholarly articleQ13442814

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P819ADS bibcode2014PLoSO...988947G
P356DOI10.1371/JOURNAL.PONE.0088947
P932PMC publication ID3934875
P698PubMed publication ID24586452
P5875ResearchGate publication ID260447602

P50authorRomika KumariQ58808607
P2093author name stringRohini Garg
Shweta Goyal
Sneha Tiwari
P2860cites workGenome structure of the legume, Lotus japonicusQ22066059
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Establishing, maintaining and modifying DNA methylation patterns in plants and animalsQ24630397
Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropicsQ26860385
Solution structures of UBA domains reveal a conserved hydrophobic surface for protein-protein interactionsQ27639223
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Human DNMT2 methylates tRNA(Asp) molecules using a DNA methyltransferase-like catalytic mechanismQ28115796
RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptomeQ28743618
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterningQ29615977
Highly integrated single-base resolution maps of the epigenome in ArabidopsisQ29616098
Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27.Q33286417
Isolation and characterization of a rice WUSCHEL-type homeobox gene that is specifically expressed in the central cells of a quiescent center in the root apical meristemQ33338608
Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis.Q33360264
Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thalianaQ33367576
The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatinQ33670594
The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana.Q33742084
On the evolutionary origin of eukaryotic DNA methyltransferases and Dnmt2.Q34091253
A DNA methyltransferase homolog with a chromodomain exists in multiple polymorphic forms in ArabidopsisQ34604260
Epigenetic modifications in plants: an evolutionary perspectiveQ34989744
The Polycomb group protein MEDEA and the DNA methyltransferase MET1 interact to repress autonomous endosperm development in Arabidopsis.Q50775932
Role of DNA methylation in growth and differentiation in Physcomitrella patens and characterization of cytosine DNA methyltransferases.Q50787017
Validation of internal control genes for quantitative gene expression studies in chickpea (Cicer arietinum L.).Q51910353
A gene expression atlas of the model legume Medicago truncatula.Q51959632
Establishment of theLotus japonicusGene Expression Atlas (LjGEA) and its use to explore legume seed maturationQ58001659
Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesisQ73200862
One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylationQ79314176
Plant cytosine-5 DNA methyltransferases: structure, function, and molecular evolutionQ80773252
HDA6 directly interacts with DNA methyltransferase MET1 and maintains transposable element silencing in ArabidopsisQ85085541
Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1)Q35021851
Twists and turns of DNA methylationQ35021889
Epigenetic regulation of stress responses in plantsQ35114858
Conserved plant genes with similarity to mammalian de novo DNA methyltransferases.Q35702821
DNA methyltransferases and structural-functional specificity of eukaryotic DNA modificationQ36228007
Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome.Q36684148
Solving the Dnmt2 enigma.Q37591989
Polycomb group complexes mediate developmental transitions in plants.Q37956551
Epigenetic mechanisms underlying genomic imprinting in plantsQ37992126
Epigenetic responses to stress: triple defense?Q38041849
Structure and function of the BAH domain in chromatin biologyQ38062560
A global view of transcriptome dynamics during flower development in chickpea by deep sequencingQ38491083
The fate of duplicated genes in a polyploid plant genomeQ38495039
Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development.Q38501925
Global comparative transcriptome analysis identifies gene network regulating secondary xylem development in Arabidopsis thalianaQ39768552
Efficient RNA virus control in Drosophila requires the RNA methyltransferase Dnmt2.Q41576777
Genetic evidence that DNA methyltransferase DRM2 has a direct catalytic role in RNA-directed DNA methylation in Arabidopsis thaliana.Q41971328
Isolation and expression analysis of genes encoding DNA methyltransferase in wheat (Triticum aestivum L.).Q42659168
A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.).Q42773651
The DNA methyltranferase Dnmt2 participates in RNA processing during cellular stress.Q42820230
Multiple nuclear localization sequences allow modulation of 5-lipoxygenase nuclear importQ42824622
An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plantsQ43090452
Rice cytosine DNA methyltransferases - gene expression profiling during reproductive development and abiotic stressQ43269696
Preferential de novo methylation of cytosine residues in non-CpG sequences by a domains rearranged DNA methyltransferase from tobacco plantsQ44548866
Imprinting of the MEA Polycomb gene is controlled by antagonism between MET1 methyltransferase and DME glycosylaseQ44687659
Modified expression of an auxin-responsive rice CC-type glutaredoxin gene affects multiple abiotic stress responsesQ45757034
De novo methyltransferase, OsDRM2, interacts with the ATP-dependent RNA helicase, OseIF4A, in riceQ46148464
Structure-guided analysis reveals nine sequence motifs conserved among DNA amino-methyltransferases, and suggests a catalytic mechanism for these enzymesQ48069333
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue2
P407language of work or nameEnglishQ1860
P304page(s)e88947
P577publication date2014-02-25
P1433published inPLOS OneQ564954
P1476titleGenomic survey, gene expression analysis and structural modeling suggest diverse roles of DNA methyltransferases in legumes
P478volume9

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cites work (P2860)
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Q38432043PpTFDB: A pigeonpea transcription factor database for exploring functional genomics in legumes.
Q92712589Resistance to Plant-Parasitic Nematodes in Chickpea: Current Status and Future Perspectives
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Q33619783The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants
Q41138278The genome-wide identification and transcriptional levels of DNA methyltransferases and demethylases in globe artichoke.

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