DNA Methylation Assessed by SMRT Sequencing Is Linked to Mutations in Neisseria meningitidis Isolates.

scientific article published on 11 December 2015

DNA Methylation Assessed by SMRT Sequencing Is Linked to Mutations in Neisseria meningitidis Isolates. is …
instance of (P31):
scholarly articleQ13442814

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P819ADS bibcode2015PLoSO..1044612S
P356DOI10.1371/JOURNAL.PONE.0144612
P932PMC publication ID4676702
P698PubMed publication ID26656597
P5875ResearchGate publication ID286637705

P50authorAraceli LamelasQ28870483
Gerd PluschkeQ28870485
Tyson A ClarkQ56480099
P2093author name stringChristoph D Schmid
Shrikant Mane
Jonas Korlach
Katharina Röltgen
Guilin Wang
Mohamad R Abdul Sater
P2860cites workRestriction and sequence alterations affect DNA uptake sequence-dependent transformation in Neisseria meningitidisQ21134507
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Epigenetic gene regulation in the bacterial worldQ24669987
Dam inactivation in Neisseria meningitidis: prevalence among diverse hyperinvasive lineagesQ24806272
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The advantages of SMRT sequencingQ28679295
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Genomic mapping of phosphorothioates reveals partial modification of short consensus sequencesQ30419110
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Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencingQ30444920
Enhanced 5-methylcytosine detection in single-molecule, real-time sequencing via Tet1 oxidationQ30456249
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Detecting DNA modifications from SMRT sequencing data by modeling sequence context dependence of polymerase kineticQ30604699
Meningococcal genetic variation mechanisms viewed through comparative analysis of serogroup C strain FAM18.Q33274203
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Indexing strategies for rapid searches of short words in genome sequences.Q33288972
Phasevarions mediate random switching of gene expression in pathogenic NeisseriaQ33434451
Genome sequencing reveals widespread virulence gene exchange among human Neisseria speciesQ33646735
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Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombinationQ34168120
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A random six-phase switch regulates pneumococcal virulence via global epigenetic changesQ34310334
Emergence of a new epidemic Neisseria meningitidis serogroup A Clone in the African meningitis belt: high-resolution picture of genomic changes that mediate immune evasion.Q34420160
Specificity of the ModA11, ModA12 and ModD1 epigenetic regulator N(6)-adenine DNA methyltransferases of Neisseria meningitidis.Q34470436
Epidemic meningitis, meningococcaemia, and Neisseria meningitidisQ34644525
DNA methylation impacts gene expression and ensures hypoxic survival of Mycobacterium tuberculosisQ34819430
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Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.Q35441451
Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing.Q36339832
High-throughput sequencing provides insights into genome variation and evolution in Salmonella TyphiQ37119288
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Homologous recombination drives both sequence diversity and gene content variation in Neisseria meningitidis.Q37208928
Exploring the roles of DNA methylation in the metal-reducing bacterium Shewanella oneidensis MR-1.Q37253104
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Variable tandem repeats accelerate evolution of coding and regulatory sequences.Q37784520
Conflicts targeting epigenetic systems and their resolution by cell death: novel concepts for methyl-specific and other restriction systemsQ37808061
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NmeSI restriction-modification system identified by representational difference analysis of a hypervirulent Neisseria meningitidis strainQ39518946
Phasevarions mediate epigenetic regulation of antimicrobial susceptibility in Neisseria meningitidis.Q41082178
Accelerated gene evolution through replication-transcription conflictsQ41970825
Whole-genome sequence of the transformable Neisseria meningitidis serogroup A strain WUE2594.Q41971567
Universal patterns of purifying selection at noncoding positions in bacteriaQ42216121
The endgame for serogroup a meningococcal disease in Africa?Q42577186
DNA cytosine methylation and heat-induced deaminationQ43019137
Mismatch repair and the regulation of phase variation in Neisseria meningitidisQ43612705
DNA methylation in Neisseria gonorrhoeae and other Neisseriae.Q54332080
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesMUMmerQ6719063
P433issue12
P407language of work or nameEnglishQ1860
P921main subjectNeisseria meningitidisQ154625
DNA methylationQ874745
P304page(s)e0144612
P577publication date2015-12-11
P1433published inPLOS OneQ564954
P1476titleDNA Methylation Assessed by SMRT Sequencing Is Linked to Mutations in Neisseria meningitidis Isolates
P478volume10

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cites work (P2860)
Q90463939Deciphering bacterial epigenomes using modern sequencing technologies
Q92538246Detailed Evaluation of Data Analysis Tools for Subtyping of Bacterial Isolates Based on Whole Genome Sequencing: Neisseria meningitidis as a Proof of Concept
Q47132342Methylomic and phenotypic analysis of the ModH5 phasevarion of Helicobacter pylori
Q28817493N6-Methyladenine: A Conserved and Dynamic DNA Mark

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