| scholarly article | Q13442814 |
| review article | Q7318358 |
| P50 | author | Ichizo Kobayashi | Q67280360 |
| P2093 | author name string | Ken Ishikawa | |
| Eri Fukuda | |||
| P2860 | cites work | DNA methylation patterns and epigenetic memory | Q22065780 |
| Genetic addiction: selfish gene's strategy for symbiosis in the genome | Q24545839 | ||
| Large-scale identification of protein-protein interaction of Escherichia coli K-12 | Q24546090 | ||
| Type I restriction systems: sophisticated molecular machines (a legacy of Bertani and Weigle) | Q24548508 | ||
| Phylogeny of the major head and tail genes of the wide-ranging T4-type bacteriophages | Q24548942 | ||
| Nucleoside triphosphate-dependent restriction enzymes | Q24555228 | ||
| Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution | Q24555229 | ||
| Digestion of highly modified bacteriophage DNA by restriction endonucleases | Q24632915 | ||
| The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores | Q24649374 | ||
| Regulation of endonuclease activity by proteolysis prevents breakage of unmodified bacterial chromosomes by type I restriction enzymes | Q24655282 | ||
| Epigenetic gene regulation in the bacterial world | Q24669987 | ||
| A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes | Q24684053 | ||
| Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay: PabI (5'-GTA/C) from the hyperthermophilic archaeon Pyrococcus abyssi | Q24813907 | ||
| Structure of Ocr from bacteriophage T7, a protein that mimics B-form DNA | Q27637438 | ||
| Novel protein fold discovered in the PabI family of restriction enzymes | Q27643963 | ||
| Structural analysis of the genetic switch that regulates the expression of restriction-modification genes | Q27651284 | ||
| Complementary action of restriction enzymes endo R · DpnI and endo R · DpnII on bacteriophage f1 DNA | Q67044385 | ||
| DNA restriction--modification genes of phage P1 and plasmid p15B. Structure and in vitro transcription | Q67286988 | ||
| Restriction of nonglucosylated T-even bacteriophage: properties of permissive mutants of Escherichia coli B and K12 | Q68565337 | ||
| Restriction of λtrp bacteriophages by Escherichia coli K | Q69364968 | ||
| Characterization of the Escherichia coli modified cytosine restriction (mcrB) gene | Q69823521 | ||
| DNA methylation of bacterial viruses T3 and T7 by different DNA methylases in Escherichia coli K12 cells | Q69899876 | ||
| Inhibition of the type I restriction-modification enzymes EcoB and EcoK by the gene 0.3 protein of bacteriophage T7 | Q70090575 | ||
| Transposon mutagenesis and genetic mapping of the rglA and rglB loci of Escherichia coli | Q70090762 | ||
| Evolution of sequence recognition by restriction-modification enzymes: selective pressure for specificity decrease | Q73168470 | ||
| Insertion with long target duplication: a mechanism for gene mobility suggested from comparison of two related bacterial genomes | Q73408431 | ||
| The recognition of methylated DNA by the GTP-dependent restriction endonuclease McrBC resides in the N-terminal domain of McrB | Q73826824 | ||
| Experimental genome evolution: large-scale genome rearrangements associated with resistance to replacement of a chromosomal restriction-modification gene complex | Q74008676 | ||
| THE COURSE OF INFECTION WITH ABNORMAL BACTERIOPHAGE T4 CONTAINING NON-GLUCOSYLATED DNA ON ESCHERICHIA COLI STRAINS | Q76936207 | ||
| A unique family of Mrr-like modification-dependent restriction endonucleases | Q39876124 | ||
| A novel activity in Escherichia coli K-12 that directs restriction of DNA modified at CG dinucleotides | Q39942806 | ||
| Nucleotide sequence of the McrB region of Escherichia coli K-12 and evidence for two independent translational initiation sites at the mcrB locus | Q39948582 | ||
| Localization of a genetic region involved in McrB restriction by Escherichia coli K-12. | Q39956464 | ||
| Genetic and sequence organization of the mcrBC locus of Escherichia coli K-12. | Q39960132 | ||
| DNA methyltransferases of Bacillus subtilis and its bacteriophages. | Q40141676 | ||
| Phage-exclusion enzymes: a bonanza of biochemical and cell biology reagents? | Q40401694 | ||
| Unidirectional translocation from recognition site and a necessary interaction with DNA end for cleavage by Type III restriction enzyme | Q40404726 | ||
| Autogenous regulation of the EcoRII methylase gene at the transcriptional level: effect of 5-azacytidine | Q40874311 | ||
| Roles of PriA protein and double-strand DNA break repair functions in UV-induced restriction alleviation in Escherichia coli | Q41081029 | ||
| Cleavage of a model DNA replication fork by a Type I restriction endonuclease. | Q41300410 | ||
| Organization of multispecific DNA methyltransferases encoded by temperate Bacillus subtilis phages | Q41339636 | ||
| Characterization of the mcrBC region of Escherichia coli K-12 wild-type and mutant strains | Q41999738 | ||
| DNA looping and translocation provide an optimal cleavage mechanism for the type III restriction enzymes | Q42002446 | ||
| M.phi 3TII: a new monospecific DNA (cytosine-C5) methyltransferase with pronounced amino acid sequence similarity to a family of adenine-N6-DNA-methyltransferases | Q42060355 | ||
| A type IV modification dependent restriction nuclease that targets glucosylated hydroxymethyl cytosine modified DNAs | Q42135164 | ||
| Grouping together highly diverged PD-(D/E)XK nucleases and identification of novel superfamily members using structure-guided alignment of sequence profiles | Q42643104 | ||
| Modification enhancement by the restriction alleviation protein (Ral) of bacteriophage lambda | Q42652294 | ||
| A mutational analysis of the PD...D/EXK motif suggests that McrC harbors the catalytic center for DNA cleavage by the GTP-dependent restriction enzyme McrBC from Escherichia coli | Q42674314 | ||
| Recombinational repair of chromosomal DNA double-strand breaks generated by a restriction endonuclease | Q43725800 | ||
| Exogenous expression of mouse Dnmt3 induces apoptosis in Xenopus early embryos | Q44011510 | ||
| Is modification sufficient to protect a bacterial chromosome from a resident restriction endonuclease? | Q44677343 | ||
| Unbalanced restriction impairs SOS-induced DNA repair effects | Q45716546 | ||
| Crystal structure of the restriction-modification system control element C.Bcll and mapping of its binding site | Q46349729 | ||
| Ca(2+)-mediated site-specific DNA cleavage and suppression of promiscuous activity of KpnI restriction endonuclease | Q47319440 | ||
| Dependence of McrBC cleavage on distance between recognition elements | Q47969878 | ||
| M.H2I, a multispecific 5C-DNA methyltransferase encoded by Bacillus amyloliquefaciens phage H2. | Q48229549 | ||
| Genetic basis of the complementary DpnI and DpnII restriction systems of S. pneumoniae: an intercellular cassette mechanism | Q48359536 | ||
| Mammalian (cytosine-5) methyltransferases cause genomic DNA methylation and lethality in Drosophila. | Q52573989 | ||
| The GTP-binding domain of McrB: more than just a variation on a common theme? | Q52895260 | ||
| Diversity of restriction-modification gene homologues in Helicobacter pylori. | Q52927779 | ||
| Scanning force microscopy of DNA translocation by the Type III restriction enzyme EcoP15I. | Q52943618 | ||
| Multiplication of a restriction-modification gene complex. | Q53935059 | ||
| Phosphorothioation of DNA in bacteria by dnd genes. | Q54432882 | ||
| Control of the endonuclease activity of type I restriction-modification systems is required to maintain chromosome integrity following homologous recombination. | Q54465803 | ||
| Restriction alleviation and modification enhancement by the Rac prophage of Escherichia coli K-12. | Q54613596 | ||
| Mrr instigates the SOS response after high pressure stress in Escherichia coli. | Q54629570 | ||
| Identification of a second polypeptide required for McrB restriction of 5-methylcytosine-containing DNA in Escherichia coli K12. | Q54731658 | ||
| Isolation of mutants in a DNA methyltransferase through mcrB-mediated restriction. | Q54737565 | ||
| The fundamental role of epigenetic events in cancer | Q56421597 | ||
| McrBC: a multisubunit GTP-dependent restriction endonuclease | Q58032884 | ||
| DNA cleavage by the type IC restriction-modification enzyme EcoR124II | Q64389312 | ||
| Structure of the restriction-modification controller protein C.Esp1396I | Q27657052 | ||
| Worms gang up on bacteria | Q27860588 | ||
| Targeted mutation of the DNA methyltransferase gene results in embryonic lethality | Q28131773 | ||
| A common mechanism of cellular death induced by bactericidal antibiotics | Q28246128 | ||
| Windows for sex-specific methylation marked by DNA methyltransferase expression profiles in mouse germ cells | Q28511971 | ||
| Genetic and physical mapping of the mcrA (rglA) and mcrB (rglB) loci of Escherichia coli K-12 | Q28769477 | ||
| Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells | Q29618090 | ||
| Dynamics of initiation, termination and reinitiation of DNA translocation by the motor protein EcoR124I | Q30476686 | ||
| When a helicase is not a helicase: dsDNA tracking by the motor protein EcoR124I. | Q30477324 | ||
| Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping | Q30479841 | ||
| Cell death upon epigenetic genome methylation: a novel function of methyl-specific deoxyribonucleases | Q30485348 | ||
| Type III restriction enzymes cleave DNA by long-range interaction between sites in both head-to-head and tail-to-tail inverted repeat | Q30494970 | ||
| Molecular evolution of DNA-(cytosine-N4) methyltransferases: evidence for their polyphyletic origin | Q30583278 | ||
| The proteolytic control of restriction activity in Escherichia coli K-12. | Q31795891 | ||
| Evidence for horizontal gene transfer in Escherichia coli speciation | Q33290386 | ||
| Substrate specificity of new methyl-directed DNA endonuclease GlaI | Q33314686 | ||
| Model for how type I restriction enzymes select cleavage sites in DNA. | Q33584495 | ||
| Restriction-modification systems as genomic parasites in competition for specific sequences | Q33756047 | ||
| Differential binding of Escherichia coli McrA protein to DNA sequences that contain the dinucleotide m5CpG | Q33760187 | ||
| Genome comparison and context analysis reveals putative mobile forms of restriction-modification systems and related rearrangements | Q33783220 | ||
| Cellular responses to postsegregational killing by restriction-modification genes | Q33789255 | ||
| A putative mobile genetic element carrying a novel type IIF restriction-modification system (PluTI) | Q33871185 | ||
| McrBs, a modulator peptide for McrBC activity. | Q33889516 | ||
| DNA translocation blockage, a general mechanism of cleavage site selection by type I restriction enzymes | Q33890885 | ||
| The phasevarion: a genetic system controlling coordinated, random switching of expression of multiple genes | Q33936713 | ||
| Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis | Q33946286 | ||
| How antibiotics kill bacteria: from targets to networks | Q33958766 | ||
| Cloning, purification and initial characterization of E. coli McrA, a putative 5-methylcytosine-specific nuclease | Q33978750 | ||
| Cloning and characterization of the HpaII methylase gene | Q33989748 | ||
| Modified bases in bacteriophage DNAs | Q34056745 | ||
| Stability of EcoRI restriction-modification enzymes in vivo differentiates the EcoRI restriction-modification system from other postsegregational cell killing systems. | Q34077198 | ||
| Roles of DNA adenine methylation in host-pathogen interactions: mismatch repair, transcriptional regulation, and more. | Q34135626 | ||
| A novel host-specific restriction system associated with DNA backbone S-modification in Salmonella | Q34298216 | ||
| Selfish behavior of restriction-modification systems | Q34317932 | ||
| Aberrant DNA methylation as a cancer-inducing mechanism | Q34410454 | ||
| The genome of the pseudo T-even bacteriophages, a diverse group that resembles T4. | Q34421027 | ||
| A plant vacuolar protease, VPE, mediates virus-induced hypersensitive cell death. | Q34549920 | ||
| Type II restriction endonucleases: structure and mechanism | Q34555997 | ||
| Hyperthermophilic DNA methyltransferase M.PabI from the archaeon Pyrococcus abyssi | Q34973904 | ||
| Organization and function of the mcrBC genes of Escherichia coli K‐12 | Q35228347 | ||
| In vivo restriction by LlaI is encoded by three genes, arranged in an operon with llaIM, on the conjugative Lactococcus plasmid pTR2030. | Q35576499 | ||
| Sequence and characterization of pvuIIR, the PvuII endonuclease gene, and of pvuIIC, its regulatory gene | Q36111748 | ||
| Genomic imprinting and methylation: epigenetic canalization and conflict | Q36143222 | ||
| Characterization and expression of the Escherichia coli Mrr restriction system | Q36151697 | ||
| The biology of restriction and anti-restriction | Q36175695 | ||
| Site-specific methylases induce the SOS DNA repair response in Escherichia coli | Q36240244 | ||
| Cloning of a restriction-modification system from Proteus vulgaris and its use in analyzing a methylase-sensitive phenotype in Escherichia coli | Q36278645 | ||
| N6-methyl-adenine: an epigenetic signal for DNA-protein interactions | Q36401376 | ||
| Maintenance forced by a restriction-modification system can be modulated by a region in its modification enzyme not essential for methyltransferase activity | Q36483785 | ||
| Translocation and specific cleavage of bacteriophage T7 DNA in vivo by EcoKI. | Q36541346 | ||
| DNA damage-induced cell death by apoptosis. | Q36561337 | ||
| Real-time kinetics of restriction-modification gene expression after entry into a new host cell | Q36649639 | ||
| Phage phi29 protein p56 prevents viral DNA replication impairment caused by uracil excision activity of uracil-DNA glycosylase | Q36932478 | ||
| Type III restriction enzymes communicate in 1D without looping between their target sites | Q37078204 | ||
| From damaged genome to cell surface: transcriptome changes during bacterial cell death triggered by loss of a restriction-modification gene complex. | Q37199542 | ||
| Restriction-modification gene complexes as selfish gene entities: roles of a regulatory system in their establishment, maintenance, and apoptotic mutual exclusion | Q37423487 | ||
| UV-induced alleviation of K-specific restriction of bacteriophage lambda | Q37503901 | ||
| Purification and characterization of the unusual deoxynucleoside, alpha-N-(9-beta-D-2'-deoxyribofuranosylpurin-6-yl)glycinamide, specified by the phage Mu modification function | Q37506751 | ||
| Epigenetic regulation of the bacterial cell cycle | Q37604044 | ||
| Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis | Q37698719 | ||
| Measuring motion on DNA by the type I restriction endonuclease EcoR124I using triplex displacement | Q38312705 | ||
| The McrBC endonuclease translocates DNA in a reaction dependent on GTP hydrolysis. | Q38323269 | ||
| Detection of anticodon nuclease residues involved in tRNALys cleavage specificity | Q38326749 | ||
| Endo R DpnI restriction of Escherichia coli DNA synthesized in vitro. Evidence that the ends of Okazaki pieces are determined by template deoxynucleotide sequence | Q39186072 | ||
| Type III restriction is alleviated by bacteriophage (RecE) homologous recombination function but enhanced by bacterial (RecBCD) function | Q39360960 | ||
| Alleviation of type I restriction in adenine methylase (dam) mutants of Escherichia coli | Q39530344 | ||
| Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses | Q39634823 | ||
| A DNA methyltransferase can protect the genome from postdisturbance attack by a restriction-modification gene complex. | Q39741220 | ||
| Evidence of participation of McrB(S) in McrBC restriction in Escherichia coli K-12. | Q39848275 | ||
| P275 | copyright license | Creative Commons Attribution-NonCommercial 2.5 Generic | Q19113746 |
| P433 | issue | 6 | |
| P921 | main subject | regulation of gene expression | Q411391 |
| DNA methylation | Q874745 | ||
| cell death | Q2383867 | ||
| enzyme | Q8047 | ||
| bacteria | Q10876 | ||
| genetic epigenesis | Q64443099 | ||
| P304 | page(s) | 325-342 | |
| P577 | publication date | 2010-11-08 | |
| 2010-12-01 | |||
| P1433 | published in | DNA Research | Q5205732 |
| P1476 | title | Conflicts targeting epigenetic systems and their resolution by cell death: novel concepts for methyl-specific and other restriction systems | |
| P478 | volume | 17 |
| Q30887032 | A comparative analysis of methylome profiles of Campylobacter jejuni sheep abortion isolate and gastroenteric strains using PacBio data. |
| Q28657639 | Bacterial genome instability |
| Q38594143 | Cellular localization and dynamics of the Mrr type IV restriction endonuclease of Escherichia coli. |
| Q35328032 | Classification of prokaryotic genetic replicators: between selfishness and altruism |
| Q42108715 | Cleavage of a model DNA replication fork by a methyl-specific endonuclease. |
| Q26829917 | Comparative genomics of defense systems in archaea and bacteria |
| Q34773696 | Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing |
| Q38623454 | Conservation of Dcm-mediated cytosine DNA methylation in Escherichia coli |
| Q36206456 | Coupling immunity and programmed cell suicide in prokaryotes: Life-or-death choices |
| Q35866162 | DNA Methylation Assessed by SMRT Sequencing Is Linked to Mutations in Neisseria meningitidis Isolates. |
| Q35362577 | Defense islands in bacterial and archaeal genomes and prediction of novel defense systems |
| Q38087543 | Diverse functions of restriction-modification systems in addition to cellular defense |
| Q33886643 | Domain movement within a gene: a novel evolutionary mechanism for protein diversification. |
| Q34304311 | Dysregulation of genome-wide gene expression and DNA methylation in abnormal cloned piglets |
| Q35153520 | Evidence for an evolutionary antagonism between Mrr and Type III modification systems |
| Q35468394 | Evolutionary genome engineering using a restriction-modification system |
| Q36244359 | Extensive Inter-Domain Lateral Gene Transfer in the Evolution of the Human Commensal Methanosphaera stadtmanae |
| Q34392545 | Gene flow and biological conflict systems in the origin and evolution of eukaryotes |
| Q47877949 | Genome-wide gene expression and DNA methylation differences in abnormally cloned and normally natural mating piglets |
| Q89891233 | Highly-regulated, diversifying NTP-based biological conflict systems with implications for emergence of multicellularity |
| Q42357253 | Identification of DNA Methyltransferase Genes in Human Pathogenic Bacteria by Comparative Genomics |
| Q91720780 | Methylation Warfare: Interaction of Pneumococcal Bacteriophages with Their Host |
| Q36305686 | Movement of DNA sequence recognition domains between non-orthologous proteins. |
| Q34283923 | Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics |
| Q47625705 | PsasM2I, a type II restriction-modification system in Pseudomonas savastanoi pv. savastanoi: differential distribution of carrier strains in the environment and the evolutionary history of homologous RM systems in the Pseudomonas syringae complex |
| Q40856276 | Restriction-Modification systems interplay causes avoidance of GATC site in prokaryotic genomes |
| Q35171608 | Restriction-modification system with methyl-inhibited base excision and abasic-site cleavage activities |
| Q31123444 | Streptacidiphilus toruniensis sp. nov., isolated from a pine forest soil |
| Q42813787 | Studying epigenetic DNA modifications in undergraduate laboratories using complementary bioinformatic and molecular approaches |
| Q58747318 | The SCO1731 methyltransferase modulates actinorhodin production and morphological differentiation of Streptomyces coelicolor A3(2) |
| Q26851498 | The other face of restriction: modification-dependent enzymes |
| Q27678979 | The recognition domain of the methyl-specific endonuclease McrBC flips out 5-methylcytosine |
| Q26865951 | To be or not to be: regulation of restriction-modification systems and other toxin-antitoxin systems |
| Q35984251 | Transposons to toxins: the provenance, architecture and diversification of a widespread class of eukaryotic effectors |
| Q58574990 | Unexpected Evolution of Lesion-Recognition Modules in Eukaryotic NER and Kinetoplast DNA Dynamics Proteins from Bacterial Mobile Elements |
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