| scholarly article | Q13442814 |
| P2093 | author name string | Shelagh Ferguson-Miller | |
| Leslie A Kuhn | |||
| Leann Buhrow | |||
| P2860 | cites work | A molecular dynamics study of water chain formation in the proton-conducting K channel of cytochrome c oxidase | Q45202552 |
| Microscopic pKa analysis of Glu286 in cytochrome c oxidase (Rhodobacter sphaeroides): toward a calibrated molecular model | Q46109336 | ||
| Water chain formation and possible proton pumping routes in Rhodobacter sphaeroides cytochrome c oxidase: a molecular dynamics comparison of the wild type and R481K mutant | Q46629283 | ||
| The open state gating mechanism of gramicidin a requires relative opposed monomer rotation and simultaneous lateral displacement. | Q50745041 | ||
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| Identifying protein folding cores from the evolution of flexible regions during unfolding | Q78605584 | ||
| Dynamics of heteropentameric nicotinic acetylcholine receptor: implications of the gating mechanism | Q80424010 | ||
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| High resolution crystal structure of Paracoccus denitrificans cytochrome c oxidase: new insights into the active site and the proton transfer pathways | Q27654918 | ||
| Redox-Dependent Conformational Changes in Cytochrome c Oxidase Suggest a Gating Mechanism for Proton Uptake | Q27655301 | ||
| Crystallographic and online spectral evidence for role of conformational change and conserved water in cytochrome oxidase proton pump | Q27666469 | ||
| WHAT IF: a molecular modeling and drug design program | Q27860734 | ||
| The SWISS-PROT protein sequence data bank | Q29026327 | ||
| ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement | Q29618046 | ||
| Identification of new, well-populated amino-acid sidechain rotamers involving hydroxyl-hydrogen atoms and sulfhydryl-hydrogen atoms | Q29620695 | ||
| Identification of conserved lipid/detergent-binding sites in a high-resolution structure of the membrane protein cytochrome c oxidase | Q30357524 | ||
| Predicting conserved water-mediated and polar ligand interactions in proteins using a K-nearest-neighbors genetic algorithm. | Q30426491 | ||
| Cytochrome c oxidase: exciting progress and remaining mysteries | Q33576115 | ||
| Decoupling mutations in the D-channel of the aa(3)-type cytochrome c oxidase from Rhodobacter sphaeroides suggest that a continuous hydrogen-bonded chain of waters is essential for proton pumping | Q33875968 | ||
| Normal mode analysis suggests a quaternary twist model for the nicotinic receptor gating mechanism | Q34190634 | ||
| The normal modes of the gramicidin-A dimer channel | Q34260066 | ||
| Common mechanism of pore opening shared by five different potassium channels | Q34600882 | ||
| Possible proton relay pathways in cytochrome c oxidase | Q34636365 | ||
| Cytochrome c oxidase deficiency: patients and animal models | Q34659040 | ||
| Impaired proton pumping in cytochrome c oxidase upon structural alteration of the D pathway | Q35022843 | ||
| Mapping protein dynamics in catalytic intermediates of the redox-driven proton pump cytochrome c oxidase | Q35108247 | ||
| A mitochondrial DNA mutation linked to colon cancer results in proton leaks in cytochrome c oxidase | Q37117512 | ||
| Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor | Q37549050 | ||
| Definition of the interaction domain for cytochrome c on cytochrome c oxidase. III. Prediction of the docked complex by a complete, systematic search | Q41710393 | ||
| Calculated proton uptake on anaerobic reduction of cytochrome C oxidase: is the reaction electroneutral? | Q41788669 | ||
| 2D-SEIRA spectroscopy to highlight conformational changes of the cytochrome c oxidase induced by direct electron transfer | Q41909897 | ||
| A chemically explicit model for the mechanism of proton pumping in heme-copper oxidases | Q41948621 | ||
| Dynamical properties of the MscL of Escherichia coli: a normal mode analysis | Q42608069 | ||
| Multiconformation continuum electrostatics analysis of the effects of a buried Asp introduced near heme a in Rhodobacter sphaeroides cytochrome c oxidase | Q42690205 | ||
| Buried waters and internal cavities in monomeric proteins | Q42844341 | ||
| Molecular dynamics simulation of water in cytochrome c oxidase reveals two water exit pathways and the mechanism of transport | Q42975917 | ||
| A novel cryoprotection scheme for enhancing the diffraction of crystals of recombinant cytochrome ba3 oxidase from Thermus thermophilus | Q43017224 | ||
| Protein flexibility predictions using graph theory | Q43629667 | ||
| The entry point of the K-proton-transfer pathway in cytochrome c oxidase | Q44114463 | ||
| Water-gated mechanism of proton translocation by cytochrome c oxidase | Q44452845 | ||
| P433 | issue | 9 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | computational biology | Q177005 |
| P304 | page(s) | 2158-2166 | |
| P577 | publication date | 2012-05-01 | |
| P1433 | published in | Biophysical Journal | Q2032955 |
| P1476 | title | From static structure to living protein: computational analysis of cytochrome c oxidase main-chain flexibility | |
| P478 | volume | 102 |
| Q38318210 | A conserved amphipathic ligand binding region influences k-path-dependent activity of cytochrome C oxidase |
| Q26767379 | Biomimetic Membranes for Multi-Redox Center Proteins |
| Q46167956 | Biophysical Journal 60 Years after Hodgkin-Huxley |
| Q37384663 | Computational prediction and in vitro analysis of potential physiological ligands of the bile acid binding site in cytochrome c oxidase |
| Q34435534 | Conserved glycine 232 in the ligand channel of ba3 cytochrome oxidase from Thermus thermophilus |
| Q28542472 | Exploring O2 diffusion in A-type cytochrome c oxidases: molecular dynamics simulations uncover two alternative channels towards the binuclear site |
| Q30357691 | Phase-sensitive detection in modulation excitation spectroscopy applied to potential induced electron transfer in cytochrome c oxidase. |
| Q28596823 | Revisiting Kadenbach: Electron flux rate through cytochrome c-oxidase determines the ATP-inhibitory effect and subsequent production of ROS |
| Q47914262 | Role of conformational change and K-path ligands in controlling cytochrome c oxidase activity. |
| Q42066097 | Structural and functional assessment of perilipin 2 lipid binding domain(s). |
| Q41854024 | Time-resolved surface-enhanced IR-absorption spectroscopy of direct electron transfer to cytochrome c oxidase from R. sphaeroides |
| Q37444435 | Translocator Protein 18 kDa (TSPO): An Old Protein with New Functions? |
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