| P2093 | author name string | Wei Zhang | |
| | Xin Zheng | |
| | Annette Lum-Jones | |
| | Alika K Maunakea | |
| | Michael J Corley | |
| P2860 | cites work | Model-based analysis of ChIP-Seq (MACS) | Q21183902 |
| | The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain | Q22065852 |
| | Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1 | Q24316558 |
| | A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands | Q24562877 |
| | Epigenetic modifications in double-strand break DNA damage signaling and repair | Q24607287 |
| | DNA methylation profiling of human chromosomes 6, 20 and 22 | Q24607522 |
| | Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks | Q24633890 |
| | The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores | Q24649374 |
| | Performance comparison between rapid sequencing platforms for ultra-low coverage sequencing strategy | Q35126522 |
| | 5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging | Q35796457 |
| | Ion torrent personal genome machine sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information | Q36022991 |
| | The dynamics of DNA methylation in schizophrenia and related psychiatric disorders. | Q36465820 |
| | Finding the fifth base: genome-wide sequencing of cytosine methylation. | Q37253268 |
| | Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition | Q37279844 |
| | Semiconductor-based DNA sequencing of histone modification states | Q37565797 |
| | Genome-wide incorporation dynamics reveal distinct categories of turnover for the histone variant H3.3. | Q37697910 |
| | Progress in Ion Torrent semiconductor chip based sequencing | Q38064812 |
| | Advances in the profiling of DNA modifications: cytosine methylation and beyond | Q38243577 |
| | DNA modifications repaired by base excision repair are epigenetic. | Q38311300 |
| | Global changes in DNA methylation and hydroxymethylation in Alzheimer's disease human brain. | Q39280179 |
| | Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome | Q39540112 |
| | Rapid Detection of the ACMG/ACOG-Recommended 23 CFTR Disease-Causing Mutations Using Ion Torrent Semiconductor Sequencing | Q39633738 |
| | Quantitative comparison of genome-wide DNA methylation mapping technologies. | Q39654059 |
| | Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias | Q39659346 |
| | MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome | Q39776070 |
| | Discovery of epigenetically silenced genes by methylated DNA immunoprecipitation in colon cancer cells | Q40033741 |
| | PAX6 methylation and ectopic expression in human tumor cells | Q41742558 |
| | Increased binding of MeCP2 to the GAD1 and RELN promoters may be mediated by an enrichment of 5-hmC in autism spectrum disorder (ASD) cerebellum | Q41897180 |
| | Large-scale structure of genomic methylation patterns | Q42186756 |
| | MIRA-assisted microarray analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomain-containing genes in lung cancer cells | Q47591519 |
| | Evaluation of the Infinium Methylation 450K technology | Q82726350 |
| | DNMT1 and DNMT3b cooperate to silence genes in human cancer cells | Q28212826 |
| | CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing | Q28249503 |
| | Use of restriction enzymes to study eukaryotic DNA methylation: I. The methylation pattern in ribosomal DNA from Xenopus laevis | Q28263661 |
| | Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration | Q28264933 |
| | CpG islands and the regulation of transcription | Q28315762 |
| | Methylation of Histone H3 on Lysine 79 Associates with a Group of Replication Origins and Helps Limit DNA Replication Once per Cell Cycle | Q28533664 |
| | BEDTools: a flexible suite of utilities for comparing genomic features | Q29547332 |
| | GREAT improves functional interpretation of cis-regulatory regions | Q29614846 |
| | DNA methylation and human disease | Q29615417 |
| | Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning | Q29615977 |
| | Conserved role of intragenic DNA methylation in regulating alternative promoters | Q29616289 |
| | An integrated semiconductor device enabling non-optical genome sequencing | Q29617149 |
| | The DNA methyltransferases of mammals | Q29617317 |
| | Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation | Q29617398 |
| | Global epigenomic reconfiguration during mammalian brain development | Q29617800 |
| | Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells | Q29618090 |
| | Analysing and interpreting DNA methylation data | Q30567093 |
| | MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments | Q30694661 |
| | ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases | Q30801567 |
| | Comprehensive analysis of DNA methylation data with RnBeads | Q30855530 |
| | BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing. | Q31002908 |
| | Specific method for the determination of genomic DNA methylation by liquid chromatography-electrospray ionization tandem mass spectrometry | Q33210828 |
| | CpG methylation is maintained in human cancer cells lacking DNMT1. | Q33901029 |
| | Field guide to next‐generation DNA sequencers | Q33904607 |
| | Using MACS to identify peaks from ChIP-Seq data | Q33919906 |
| | Epigenome Mapping in Normal and Disease States | Q34051535 |
| | Contrasting chromatin organization of CpG islands and exons in the human genome | Q34080262 |
| | Principles and challenges of genomewide DNA methylation analysis | Q34096366 |
| | Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications. | Q34138823 |
| | Methylome analysis using MeDIP-seq with low DNA concentrations | Q34189000 |
| | Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods | Q34353782 |
| | A comparison of the whole genome approach of MeDIP-seq to the targeted approach of the Infinium HumanMethylation450 BeadChip(®) for methylome profiling | Q34500040 |
| | Analysis and design of RNA sequencing experiments for identifying isoform regulation | Q34565989 |
| | Assessing the fecal microbiota: an optimized ion torrent 16S rRNA gene-based analysis protocol | Q34837950 |
| | Genomic mapping of 5-hydroxymethylcytosine in the human brain | Q35088075 |
| | RNA-seq based transcriptome analysis of hepatitis E virus (HEV) and hepatitis B virus (HBV) replicon transfected Huh-7 cells | Q35088268 |
| P433 | issue | 2 | |
| P921 | main subject | semiconductor | Q11456 |
| | DNA methylation | Q874745 |
| P304 | page(s) | 153-166 | |
| P577 | publication date | 2015-01-01 | |
| P1433 | published in | Epigenetics | Q15753739 |
| P1476 | title | Semiconductor-based sequencing of genome-wide DNA methylation states | |
| P478 | volume | 10 | |