scholarly article | Q13442814 |
P356 | DOI | 10.1038/CR.2013.110 |
P2888 | exact match | https://scigraph.springernature.com/pub.10.1038/cr.2013.110 |
P932 | PMC publication ID | 3817542 |
P698 | PubMed publication ID | 23938295 |
P5875 | ResearchGate publication ID | 255788969 |
P2093 | author name string | Kairong Cui | |
Keji Zhao | |||
Iouri Chepelev | |||
Alika K Maunakea | |||
P2860 | cites work | Chromatin and Alternative Splicing | Q57310336 |
Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules | Q36446228 | ||
Design and analysis of ChIP-seq experiments for DNA-binding proteins | Q37003887 | ||
MECP2 promoter methylation and X chromosome inactivation in autism | Q37039904 | ||
Neuronal cell depolarization induces intragenic chromatin modifications affecting NCAM alternative splicing. | Q37132771 | ||
Alternative splicing and disease | Q37320845 | ||
Variants within MECP2, a key transcription regulator, are associated with increased susceptibility to lupus and differential gene expression in patients with systemic lupus erythematosus | Q37324934 | ||
5-Aza-2'-deoxycytidine-mediated reductions in G9A histone methyltransferase and histone H3 K9 di-methylation levels are linked to tumor suppressor gene reactivation | Q40262851 | ||
A slow RNA polymerase II affects alternative splicing in vivo | Q40627617 | ||
MECP2 truncating mutations cause histone H4 hyperacetylation in Rett syndrome | Q40808969 | ||
Relationship between nucleosome positioning and DNA methylation | Q42151152 | ||
Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells | Q45092709 | ||
Nucleosome positioning as a determinant of exon recognition | Q46849980 | ||
Abnormal DNA methylation in CD4+ T cells from patients with systemic lupus erythematosus, systemic sclerosis, and dermatomyositis | Q47793786 | ||
Model-based analysis of ChIP-Seq (MACS) | Q21183902 | ||
Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2 | Q22337290 | ||
Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex | Q24324026 | ||
Dissection of the methyl-CpG binding domain from the chromosomal protein MeCP2 | Q24615012 | ||
Epigenetics in alternative pre-mRNA splicing | Q24625879 | ||
Human DNA methylomes at base resolution show widespread epigenomic differences | Q24633677 | ||
TopHat: discovering splice junctions with RNA-Seq | Q24655505 | ||
Integrated epigenomic analyses of neuronal MeCP2 reveal a role for long-range interaction with active genes | Q24670122 | ||
High-resolution profiling of histone methylations in the human genome | Q27860906 | ||
DNMT1 and DNMT3b cooperate to silence genes in human cancer cells | Q28212826 | ||
CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing | Q28249503 | ||
Genomic DNA methylation: the mark and its mediators | Q28290773 | ||
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters | Q28302903 | ||
A brain-derived MeCP2 complex supports a role for MeCP2 in RNA processing | Q28572490 | ||
Conserved role of intragenic DNA methylation in regulating alternative promoters | Q29616289 | ||
The role of DNA methylation in mammalian epigenetics | Q29617979 | ||
Demethylation by 5-aza-2'-deoxycytidine in colorectal cancer cells targets genomic DNA whilst promoter CpG island methylation persists | Q30985494 | ||
Reduced MeCP2 expression is frequent in autism frontal cortex and correlates with aberrant MECP2 promoter methylation | Q33283941 | ||
A novel CpG island set identifies tissue-specific methylation at developmental gene loci | Q33317354 | ||
Relationship between gene body DNA methylation and intragenic H3K9me3 and H3K36me3 chromatin marks | Q33883693 | ||
Human epigenome data reveal increased CpG methylation in alternatively spliced sites and putative exonic splicing enhancers | Q33890437 | ||
Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development. | Q33898721 | ||
Conservation and divergence of methylation patterning in plants and animals | Q33928315 | ||
Regulation of alternative polyadenylation by genomic imprinting | Q34011433 | ||
Contrasting chromatin organization of CpG islands and exons in the human genome | Q34080262 | ||
Regulation of RNA splicing by the methylation-dependent transcriptional repressor methyl-CpG binding protein 2. | Q34098728 | ||
DNA methylation and demethylation in mammals | Q34174778 | ||
Rett syndrome: a Rosetta stone for understanding the molecular pathogenesis of autism | Q34499035 | ||
MeCP2 dysfunction in Rett syndrome and related disorders | Q34519177 | ||
Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation | Q34605595 | ||
Cell type-specific DNA methylation at intragenic CpG islands in the immune system. | Q35085275 | ||
Hu proteins regulate alternative splicing by inducing localized histone hyperacetylation in an RNA-dependent manner | Q35202794 | ||
P275 | copyright license | Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported | Q19125045 |
P6216 | copyright status | copyrighted | Q50423863 |
P433 | issue | 11 | |
P921 | main subject | DNA methylation | Q874745 |
alternative mRNA splicing, via spliceosome | Q21114084 | ||
P304 | page(s) | 1256-1269 | |
P577 | publication date | 2013-08-13 | |
P1433 | published in | Cell Research | Q1524018 |
P1476 | title | Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition | |
P478 | volume | 23 |
Q38290847 | 'Mediator-ing' messenger RNA processing. |
Q33813311 | 4sUDRB-seq: measuring genomewide transcriptional elongation rates and initiation frequencies within cells |
Q34616176 | 5-Hydroxymethylcytosine: a stable or transient DNA modification? |
Q91994952 | A Homeostasis Hypothesis of Avian Influenza Resistance in Chickens |
Q35620759 | A chromatin code for alternative splicing involving a putative association between CTCF and HP1α proteins |
Q38964511 | A computational method for studying the relation between alternative splicing and DNA methylation |
Q38900677 | A diverse epigenetic landscape at human exons with implication for expression |
Q51672974 | A possible role of DNA methylation in functional divergence of a fast evolving duplicate gene encoding odorant binding protein 11 in the honeybee. |
Q92072618 | Aberrant DNA methylation defines isoform usage in cancer, with functional implications |
Q64881923 | Activity-dependent aberrations in gene expression and alternative splicing in a mouse model of Rett syndrome. |
Q48438427 | Adolescent binge-pattern alcohol exposure alters genome-wide DNA methylation patterns in the hypothalamus of alcohol-naïve male offspring. |
Q57643705 | Advances in Genetic Discovery and Implications for Counseling of Patients and Families with Autism Spectrum Disorders |
Q49866214 | Alternative Splicing of Differentiated Myeloid Cell Transcripts after Infection by Anaplasma phagocytophilum Impacts a Selective Group of Cellular Programs. |
Q55495606 | Alternative Splicing of FOXP3-Virtue and Vice. |
Q88912942 | Alternative splicing and cancer metastasis: prognostic and therapeutic applications |
Q38693562 | Alternatively spliced MEFV transcript lacking exon 2 and its protein isoform pyrin-2d implies an epigenetic regulation of the gene in inflammatory cell culture models |
Q36088876 | Analysis and Visualization Tool for Targeted Amplicon Bisulfite Sequencing on Ion Torrent Sequencers |
Q28647527 | Arterial endothelial methylome: differential DNA methylation in athero-susceptible disturbed flow regions in vivo |
Q36456987 | Association between SMN2 methylation and disease severity in Chinese children with spinal muscular atrophy |
Q91516795 | Association between mercury in cord serum and sex-specific DNA methylation in cord tissues |
Q26748627 | BDNF DNA methylation changes as a biomarker of psychiatric disorders: literature review and open access database analysis |
Q50043017 | Baicalin hydrate inhibits cancer progression in nasopharyngeal carcinoma by affecting genome instability and splicing. |
Q35043997 | Base-resolution maps of 5-methylcytosine and 5-hydroxymethylcytosine in Dahl S rats: effect of salt and genomic sequence |
Q33635817 | Body-hypomethylated human genes harbor extensive intragenic transcriptional activity and are prone to cancer-associated dysregulation |
Q37024209 | Brain phosphorylation of MeCP2 at serine 164 is developmentally regulated and globally alters its chromatin association |
Q26826928 | CXCR3 in carcinoma progression |
Q88955687 | Cellular and epigenetic drivers of stem cell ageing |
Q35824831 | Changes in correlation between promoter methylation and gene expression in cancer |
Q33703288 | Characterization of Cytosine Methylation and the DNA Methyltransferases of Toxoplasma gondii |
Q34979975 | Chromatin Memory in the Development of Human Cancers |
Q38261746 | Chromatin remodeler mutations in human cancers: epigenetic implications |
Q90272769 | Chromatin structure regulates cancer-specific alternative splicing events in primary HPV-related oropharyngeal squamous cell carcinoma |
Q28081880 | Chromatin, DNA structure and alternative splicing |
Q38375116 | Clinical and biological progress over 50 years in Rett syndrome. |
Q34989725 | Cloning of multiple ERα mRNA variants in killifish (Fundulus heteroclitus), and differential expression by tissue type, stage of reproduction, and estrogen exposure in fish from polluted and unpolluted environments |
Q100526145 | Cocaine-related DNA methylation in caudate neurons alters 3D chromatin structure of the IRXA gene cluster |
Q64237044 | Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity |
Q37257822 | Comparative DNA Methylation Profiling Reveals an Immunoepigenetic Signature of HIV-related Cognitive Impairment |
Q36441240 | Connecting the dots: chromatin and alternative splicing in EMT. |
Q38973004 | Cotranscriptional histone H2B monoubiquitylation is tightly coupled with RNA polymerase II elongation rate |
Q38815706 | Coupling of RNA Polymerase II Transcription Elongation with Pre-mRNA Splicing |
Q92434900 | CpG promoter hypo-methylation and up-regulation of microRNA-190b in hormone receptor-positive breast cancer |
Q97521971 | DNA Methylation and Demethylation Are Regulated by Functional DNA Methyltransferases and DnTET Enzymes in Diuraphis noxia |
Q39003540 | DNA Methylation and Gene Regulation in Honeybees: From Genome-Wide Analyses to Obligatory Epialleles |
Q64890760 | DNA Methylation and Susceptibility to Autism Spectrum Disorder. |
Q26765889 | DNA Methylation in Skeletal Muscle Stem Cell Specification, Proliferation, and Differentiation. |
Q28082578 | DNA Methylation within Transcribed Regions |
Q26776426 | DNA Methylation: Insights into Human Evolution |
Q27011914 | DNA demethylation and invasive cancer: implications for therapeutics |
Q41167372 | DNA demethylation by 5-aza-2'-deoxycytidine is imprinted, targeted to euchromatin, and has limited transcriptional consequences |
Q91717468 | DNA hypermethylation in disease: mechanisms and clinical relevance |
Q35569780 | DNA methylation and chromatin organization in insects: insights from the Ant Camponotus floridanus |
Q38967653 | DNA methylation and gene expression regulation associated with vascularization in Sorghum bicolor |
Q91891000 | DNA methylation directs microRNA biogenesis in mammalian cells |
Q38819038 | DNA methylation in Parkinson's disease |
Q92770990 | DNA methylation in Schwann cells and in oligodendrocytes |
Q38861997 | DNA methylation in adult diffuse gliomas |
Q50455671 | DNA methylation in oligodendroglial cells during developmental myelination and in disease. |
Q38697324 | DNA methylation protects against cisplatin-induced kidney injury by regulating specific genes, including interferon regulatory factor 8. |
Q48201595 | DNA methylation rather than single nucleotide polymorphisms regulates the production of an aberrant splice variant of IL6R in mastitic cows |
Q52330350 | DNA methylation-based subclassification of psoriasis in the Chinese Han population. |
Q38261602 | DNA methylome profiling beyond promoters - taking an epigenetic snapshot of the breast tumor microenvironment |
Q26829214 | DNA modifications: function and applications in normal and disease States |
Q58580259 | DNMT3B Functions: Novel Insights From Human Disease |
Q92897795 | DNMT3B shapes the mCA landscape and regulates mCG for promoter bivalency in human embryonic stem cells |
Q37418067 | Damage-inducible intragenic demethylation of the human TP53 tumor suppressor gene is associated with transcription from an alternative intronic promoter. |
Q41595455 | Detection of recurrent alternative splicing switches in tumor samples reveals novel signatures of cancer |
Q52677388 | Developmentally linked human DNA hypermethylation is associated with down-modulation, repression, and upregulation of transcription. |
Q52671372 | Diversification of the muscle proteome through alternative splicing. |
Q34410107 | Dnmt1-independent CG methylation contributes to nucleosome positioning in diverse eukaryotes |
Q39432488 | Do social insects support Haig's kin theory for the evolution of genomic imprinting? |
Q26751199 | Does skeletal muscle have an 'epi'-memory? The role of epigenetics in nutritional programming, metabolic disease, aging and exercise |
Q38681926 | Drug Addiction and DNA Modifications |
Q90595513 | Early-life DNA methylation profiles are indicative of age-related transcriptome changes |
Q38708761 | Effect of histone modifications on hMLH1 alternative splicing in gastric cancer |
Q36574548 | Effects of DNA Methylation and Chromatin State on Rates of Molecular Evolution in Insects |
Q26852305 | Enzymatic DNA oxidation: mechanisms and biological significance |
Q64076067 | Epigenetic Regulations in Neuropsychiatric Disorders |
Q35138074 | Epigenetic and transcriptional determinants of the human breast |
Q38286050 | Epigenetic contributions to the developmental origins of adult lung disease |
Q37700243 | Epigenetic features in the oyster Crassostrea gigas suggestive of functionally relevant promoter DNA methylation in invertebrates |
Q28081134 | Epigenetic mechanisms in heart development and disease |
Q57024458 | Epigenetic modifications by polyphenolic compounds alter gene expression in the hippocampus |
Q60921915 | Epigenetic regulation of alternative splicing |
Q99565367 | Epigenetic regulation of osteopontin splicing isoform c defines its role as a microenvironmental factor to promote the survival of colon cancer cells from 5-FU treatment |
Q38823108 | Epigenetic studies in Developmental Origins of Health and Disease: pitfalls and key considerations for study design and interpretation |
Q47647776 | Epigenetics and DNA methylomic profiling in Alzheimer's disease and other neurodegenerative diseases. |
Q38218535 | Epigenetics in radiation-induced fibrosis |
Q38592594 | Epigenetics in the Vascular Endothelium: Looking From a Different Perspective in the Epigenomics Era. |
Q38282809 | Epigenetics in the hematologic malignancies. |
Q38753701 | Epigenetics studies of fetal alcohol spectrum disorder: where are we now? |
Q27024835 | Epigenetics, chromatin and genome organization: recent advances from the ENCODE project |
Q34238040 | Epigenetics: a new way to look at kidney diseases |
Q37068074 | Epigenomics meets splicing through the TETs and CTCF. |
Q35759432 | Expression of mouse Dab2ip transcript variants and gene methylation during brain development. |
Q35608609 | Facioscapulohumeral muscular dystrophy as a model for epigenetic regulation and disease |
Q38319920 | Function and information content of DNA methylation |
Q39126183 | Functional assessment of MeCP2 in Rett syndrome and cancers of breast, colon, and prostate |
Q64040347 | Gene-Specific Intron Retention Serves as Molecular Signature that Distinguishes Melanoma from Non-Melanoma Cancer Cells in Greek Patients |
Q37661867 | Gene-specific DNA methylation may mediate atypical antipsychotic-induced insulin resistance. |
Q55341666 | Genes and Aggressive Behavior: Epigenetic Mechanisms Underlying Individual Susceptibility to Aversive Environments. |
Q35873163 | Genome Wide Methylome Alterations in Lung Cancer. |
Q38913659 | Genome distribution of replication-independent histone H1 variants shows H1.0 associated with nucleolar domains and H1X associated with RNA polymerase II-enriched regions |
Q33842854 | Genome-wide DNA methylation analysis of the porcine hypothalamus-pituitary-ovary axis |
Q35112893 | Genome-wide DNA methylation analysis predicts an epigenetic switch for GATA factor expression in endometriosis. |
Q33634707 | Genome-wide DNA methylation analysis reveals loci that distinguish different types of adipose tissue in obese individuals |
Q42063418 | Genome-wide DNA methylation reprogramming in response to inorganic arsenic links inhibition of CTCF binding, DNMT expression and cellular transformation |
Q92450883 | Genome-wide analysis reveals the association between alternative splicing and DNA methylation across human solid tumors |
Q35973407 | Genome-wide bisulfite sequencing in zygotes identifies demethylation targets and maps the contribution of TET3 oxidation. |
Q35171354 | Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons |
Q89449601 | Genome-wide methylation and transcriptome of blood neutrophils reveal the roles of DNA methylation in affecting transcription of protein-coding genes and miRNAs in E. coli-infected mastitis cows |
Q58736240 | Genomic Landscape of Methylation Islands in Hymenopteran Insects |
Q60302686 | Genomic and regulatory characteristics of significant transcription factors in colorectal cancer metastasis |
Q38247803 | Genomic distribution and possible functions of DNA hydroxymethylation in the brain |
Q37211030 | Global intron retention mediated gene regulation during CD4+ T cell activation. |
Q33878912 | H3K4 demethylase KDM5B regulates global dynamics of transcription elongation and alternative splicing in embryonic stem cells |
Q33784619 | Hatching enzymes disrupt aberrant gonadal degeneration by the autophagy/apoptosis cell fate decision |
Q48141821 | Hepatic IGF1 DNA methylation is influenced by gender but not by intrauterine growth restriction in the young lamb. |
Q37714507 | Heritable Gene Regulation in the CD4:CD8 T Cell Lineage Choice. |
Q92594582 | High-Resolution Bisulfite-Sequencing of Peripheral Blood DNA Methylation in Early-Onset and Familial Risk Breast Cancer Patients |
Q33694132 | High-throughput sequencing offers new insights into 5-hydroxymethylcytosine |
Q91932239 | Histone H1.5 binds over splice sites in chromatin and regulates alternative splicing |
Q50461322 | Hypermethylation of antisense long noncoding RNAs in acute lymphoblastic leukemia. |
Q55689426 | Hypermethylation of normal mucosa of esophagus-specific 1 is associated with an unfavorable prognosis in patients with non-small cell lung cancer. |
Q92834757 | Hypoxia-induced changes in intragenic DNA methylation correlate with alternative splicing in breast cancer |
Q33741082 | ICF-specific DNMT3B dysfunction interferes with intragenic regulation of mRNA transcription and alternative splicing. |
Q92115848 | Identification of DNA motifs that regulate DNA methylation |
Q52568731 | In silico epigenetics of metal exposure and subclinical atherosclerosis in middle aged men: pilot results from the Aragon Workers Health Study. |
Q47133300 | Independence between pre-mRNA splicing and DNA methylation in an isogenic minigene resource |
Q39268218 | Inhibition of DNA methyltransferases regulates cocaine self-administration by rats: a genome-wide DNA methylation study |
Q34620256 | Integrated analyses of DNA methylation and hydroxymethylation reveal tumor suppressive roles of ECM1, ATF5, and EOMES in human hepatocellular carcinoma |
Q64236991 | Integrated epigenomic analysis stratifies chromatin remodellers into distinct functional groups |
Q36213492 | Integrated methylome and transcriptome analysis reveals novel regulatory elements in pediatric acute lymphoblastic leukemia |
Q35099021 | Intermediate DNA methylation is a conserved signature of genome regulation |
Q93046800 | Interplay of LIS1 and MeCP2: Interactions and Implications With the Neurodevelopmental Disorders Lissencephaly and Rett Syndrome |
Q46618175 | Intragenic DNA methylation and BORIS-mediated cancer-specific splicing contribute to the Warburg effect |
Q38715367 | Intragenic DNA methylation prevents spurious transcription initiation |
Q33654322 | Intron retention is regulated by altered MeCP2-mediated splicing factor recruitment. |
Q36810277 | Isoform switching and exon skipping induced by the DNA methylation inhibitor 5-Aza-2'-deoxycytidine |
Q36613033 | It's Time for An Epigenomics Roadmap of Heart Failure |
Q36645680 | Mapping Human Pluripotent-to-Cardiomyocyte Differentiation: Methylomes, Transcriptomes, and Exon DNA Methylation "Memories". |
Q50140785 | MeCP2 interacts with chromosomal microRNAs in brain. |
Q26824983 | MeCP2 post-translational modifications: a mechanism to control its involvement in synaptic plasticity and homeostasis? |
Q33825770 | MeCP2 regulates Tet1-catalyzed demethylation, CTCF binding, and learning-dependent alternative splicing of the BDNF gene in Turtle |
Q90635259 | MeCP2-E1 isoform is a dynamically expressed, weakly DNA-bound protein with different protein and DNA interactions compared to MeCP2-E2 |
Q38235909 | MeCP2: multifaceted roles in gene regulation and neural development |
Q33709275 | MeDIP-seq and nCpG analyses illuminate sexually dimorphic methylation of gonadal development genes with high historic methylation in turtle hatchlings with temperature-dependent sex determination |
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Q104495301 | Methyl-CpG-binding protein 2 mediates overlapping mechanisms across brain disorders |
Q36443334 | MethylAction: detecting differentially methylated regions that distinguish biological subtypes |
Q93146769 | Methylation analysis of Gasdermin E shows great promise as a biomarker for colorectal cancer |
Q35157209 | Methylomic trajectories across human fetal brain development |
Q37059935 | MiR-130a regulates neurite outgrowth and dendritic spine density by targeting MeCP2 |
Q30575472 | Mice with an isoform-ablating Mecp2 exon 1 mutation recapitulate the neurologic deficits of Rett syndrome |
Q28552209 | Misregulation of Alternative Splicing in a Mouse Model of Rett Syndrome |
Q53060332 | Molecular characterization and analysis of the porcine NURR1 gene. |
Q36716971 | Monogenic mouse models of autism spectrum disorders: Common mechanisms and missing links. |
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Q36570955 | Nanoparticle-mediated rhodopsin cDNA but not intron-containing DNA delivery causes transgene silencing in a rhodopsin knockout model |
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Q26851510 | New answers to old questions from genome-wide maps of DNA methylation in hematopoietic cells |
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Q37618677 | Ontogeny, conservation and functional significance of maternally inherited DNA methylation at two classes of non-imprinted genes. |
Q28256773 | Overexpression of Rad51C splice variants in colorectal tumors |
Q92178215 | Pathogenic Variants in STXBP1 and in Genes for GABAa Receptor Subunities Cause Atypical Rett/Rett-like Phenotypes |
Q46250095 | Piecing together cis-regulatory networks: insights from epigenomics studies in plants |
Q50059089 | Population-dependent Intron Retention and DNA Methylation in Breast Cancer. |
Q35671023 | Prediction of promoters and enhancers using multiple DNA methylation-associated features |
Q92109239 | Preliminary indications that the Attachment and Biobehavioral Catch-up Intervention alters DNA methylation in maltreated children |
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Q58710647 | Profiling DNA Methylation Based on Next-Generation Sequencing Approaches: New Insights and Clinical Applications |
Q26746025 | Profiling genome-wide DNA methylation |
Q36615751 | Profiling the genome-wide DNA methylation pattern of porcine ovaries using reduced representation bisulfite sequencing |
Q35977326 | Proton irradiation induces persistent and tissue-specific DNA methylation changes in the left ventricle and hippocampus |
Q38818183 | Proximal methylation features associated with nonrandom changes in gene body methylation. |
Q64899586 | Putative biomarkers of malignant transformation of sinonasal inverted papilloma into squamous cell carcinoma. |
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Q37648778 | Regulation of mRNA splicing by MeCP2 via epigenetic modifications in the brain |
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Q37684657 | Regulatory landscape and clinical implication of MBD3 in human malignant glioma. |
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Q38679766 | The determinants of alternative RNA splicing in human cells. |
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Q37706395 | Whole genome DNA methylation: beyond genes silencing |
Q33741993 | Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the human brain. |
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