Antigenicity and Immunogenicity in HIV-1 Antibody-Based Vaccine Design

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Antigenicity and Immunogenicity in HIV-1 Antibody-Based Vaccine Design is …
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P356DOI10.4172/2155-6113
P932PMC publication ID3515071
P698PubMed publication ID23227445
P5875ResearchGate publication ID233890084

P50authorQuentin J SattentauQ59822898
Leopold KongQ61276651
P2860cites workPrediction methods for B-cell epitopesQ51887353
VaxGen vaccine trial fails the test but may offer insightsQ56933908
AIDS groups applaud VaxGen despite vaccine trial resultsQ56934323
A sweet cleft in HIV's armourQ59097964
Limitations of the anti-idiotype strategy for an HIV vaccineQ69744006
Lack of induction of antibodies specific for conserved, discontinuous epitopes of HIV-1 envelope glycoprotein by candidate AIDS vaccinesQ71746910
HIV-1 antibody--debris or virion?Q73206011
Conformational constraints imposed on a pan-neutralizing HIV-1 antibody epitope result in increased antigenicity but not neutralizing responseQ81367931
Two meanings of reverse vaccinology and the empirical nature of vaccine scienceQ84882734
Computational Protein Design Using Flexible Backbone Remodeling and Resurfacing: Case Studies in Structure-Based Antigen DesignQ85244150
Antibody vs. HIV in a clash of evolutionary titansQ24536059
Polyclonal B cell responses to conserved neutralization epitopes in a subset of HIV-1-infected individualsQ24635002
Structural definition of a conserved neutralization epitope on HIV-1 gp120Q24655948
Cross-competition of CD8+ T cells shapes the immunodominance hierarchy during boost vaccinationQ24676067
Hyperglycosylated Mutants of Human Immunodeficiency Virus (HIV) Type 1 Monomeric gp120 as Novel Antigens for HIV Vaccine DesignQ24679395
Vaccines: the Fourth CenturyQ27490454
Antibody domain exchange is an immunological solution to carbohydrate cluster recognitionQ27641517
Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9Q27644478
Molecular architecture of native HIV-1 gp120 trimersQ27651385
Structural Basis of Immune Evasion at the Site of CD4 Attachment on HIV-1 gp120Q27658449
Structure of HIV-1 gp120 with gp41-interactive region reveals layered envelope architecture and basis of conformational mobilityQ27658989
Crystal Structure of PG16 and Chimeric Dissection with Somatically Related PG9: Structure-Function Analysis of Two Quaternary-Specific Antibodies That Effectively Neutralize HIV-1Q27662167
Structural Basis for Broad and Potent Neutralization of HIV-1 by Antibody VRC01Q27663293
Computational design of epitope-scaffolds allows induction of antibodies specific for a poorly immunogenic HIV vaccine epitopeQ27664365
A nonself sugar mimic of the HIV glycan shield shows enhanced antigenicityQ27664589
Elicitation of structure-specific antibodies by epitope scaffoldsQ27664711
Crystal Structure of Human Antibody 2909 Reveals Conserved Features of Quaternary Structure-Specific Antibodies That Potently Neutralize HIV-1Q27666407
Sequence and Structural Convergence of Broad and Potent HIV Antibodies That Mimic CD4 BindingQ27670829
Focused Evolution of HIV-1 Neutralizing Antibodies Revealed by Structures and Deep SequencingQ27671696
A Potent and Broad Neutralizing Antibody Recognizes and Penetrates the HIV Glycan ShieldQ27675032
Computation-guided backbone grafting of a discontinuous motif onto a protein scaffoldQ27675190
Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibodyQ27759364
Antigenicity and immunogenicity of the HIV-1 gp41 epitope ELDKWA inserted into permissive sites of the MalE proteinQ28140278
Fine mapping of the interaction of neutralizing and nonneutralizing monoclonal antibodies with the CD4 binding site of human immunodeficiency virus type 1 gp120.Q28217208
Broadly neutralizing anti-HIV antibody 4E10 recognizes a helical conformation of a highly conserved fusion-associated motif in gp41Q28236154
The antigenic structure of the HIV gp120 envelope glycoproteinQ28274698
GP120: target for neutralizing HIV-1 antibodiesQ28303124
Antibody neutralization and escape by HIV-1Q29547345
Broad and potent neutralizing antibodies from an African donor reveal a new HIV-1 vaccine targetQ29547347
Broad neutralization coverage of HIV by multiple highly potent antibodiesQ29615361
Structure of an unliganded simian immunodeficiency virus gp120 coreQ29616089
Efficient neutralization of primary isolates of HIV-1 by a recombinant human monoclonal antibodyQ29618366
Structure of a V3-containing HIV-1 gp120 coreQ29619014
HIV-1 evades antibody-mediated neutralization through conformational masking of receptor-binding sitesQ29619017
Rational design of envelope identifies broadly neutralizing human monoclonal antibodies to HIV-1Q29619511
Evolutionary and immunological implications of contemporary HIV-1 variation.Q30329205
Identification and characterization of conserved and variable regions in the envelope gene of HTLV-III/LAV, the retrovirus of AIDS.Q30355613
The challenges of eliciting neutralizing antibodies to HIV-1 and to influenza virus.Q30367176
Vaccine Design for CD8 T Lymphocyte ResponsesQ30411492
Correlation between segmental mobility and the location of antigenic determinants in proteinsQ30412108
Selection of HIV-specific immunogenic epitopes by screening random peptide libraries with HIV-1-positive sera.Q30681068
Identification and characterization of a peptide that specifically binds the human, broadly neutralizing anti-human immunodeficiency virus type 1 antibody b12Q30701127
Immunogenicity of HIV type 1 gp120 CD4 binding site phage mimotopesQ31143023
Anti-Human Immunodeficiency Virus Type 1 Human Monoclonal Antibodies that Bind Discontinuous Epitopes in the Viral Glycoproteins Can Identify Mimotopes from Recombinant Phage Peptide Display LibrariesQ32145824
Live attenuated, nef-deleted SIV is pathogenic in most adult macaques after prolonged observationQ33346236
Broad neutralization of human immunodeficiency virus type 1 (HIV-1) elicited from human rhinoviruses that display the HIV-1 gp41 ELDKWA epitopeQ33417195
Antibodies that inhibit fusion of human immunodeficiency virus-infected cells bind a 24-amino acid sequence of the viral envelope, gp120Q33571605
Effect of trimerization motifs on quaternary structure, antigenicity, and immunogenicity of a noncleavable HIV-1 gp140 envelope glycoproteinQ33571825
Envelope glycans of immunodeficiency virions are almost entirely oligomannose antigens.Q33636347
Protection of Macaques against pathogenic simian/human immunodeficiency virus 89.6PD by passive transfer of neutralizing antibodies.Q33647300
Glycoproteins: glycan presentation and protein-fold stabilityQ33699059
Neutralization of Human Immunodeficiency Virus Type 1 by Antibody to gp120 Is Determined Primarily by Occupancy of Sites on the Virion Irrespective of Epitope SpecificityQ33782556
Improved elicitation of neutralizing antibodies against primary human immunodeficiency viruses by soluble stabilized envelope glycoprotein trimersQ33836042
Rational antibody-based HIV-1 vaccine design: current approaches and future directionsQ33937285
Cross-reactive HIV-1-neutralizing human monoclonal antibodies identified from a patient with 2F5-like antibodiesQ34006748
A limited number of antibody specificities mediate broad and potent serum neutralization in selected HIV-1 infected individualsQ34047445
Design of a non-glycosylated outer domain-derived HIV-1 gp120 immunogen that binds to CD4 and induces neutralizing antibodiesQ34094476
Expression-system-dependent modulation of HIV-1 envelope glycoprotein antigenicity and immunogenicityQ34175370
Cross-clade HIV-1 neutralizing antibodies induced with V3-scaffold protein immunogens following priming with gp120 DNA.Q34204047
Requirements for empirical immunogenicity trials, rather than structure-based design, for developing an effective HIV vaccineQ34225659
Scaffolding to build a rational vaccine design strategyQ34241394
Characterization of antibody responses elicited by human immunodeficiency virus type 1 primary isolate trimeric and monomeric envelope glycoproteins in selected adjuvantsQ34302085
A conserved neutralizing epitope on gp41 of human immunodeficiency virus type 1Q34306804
The V1/V2 domain of gp120 is a global regulator of the sensitivity of primary human immunodeficiency virus type 1 isolates to neutralization by antibodies commonly induced upon infectionQ34317025
The mannose-dependent epitope for neutralizing antibody 2G12 on human immunodeficiency virus type 1 glycoprotein gp120.Q34341843
The broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2G12 recognizes a cluster of alpha1-->2 mannose residues on the outer face of gp120.Q34342352
Structure and mechanistic analysis of the anti-human immunodeficiency virus type 1 antibody 2F5 in complex with its gp41 epitopeQ34348303
Human immunodeficiency virus type 1 recombination: rate, fidelity, and putative hot spotsQ34355430
Effects of glycosylation on peptide conformation: a synergistic experimental and computational study.Q34418726
Nature of nonfunctional envelope proteins on the surface of human immunodeficiency virus type 1.Q34434854
Antigenicity and immunogenicity of synthetic peptidesQ34535909
Type-specific epitopes targeted by monoclonal antibodies with exceptionally potent neutralizing activities for selected strains of human immunodeficiency virus type 1 map to a common region of the V2 domain of gp120 and differ only at single positioQ34583767
An HIV vaccine--evolving conceptsQ34629012
Limited or no protection by weakly or nonneutralizing antibodies against vaginal SHIV challenge of macaques compared with a strongly neutralizing antibodyQ34630446
Is developing an HIV-1 vaccine possible?Q35043547
Trimeric HIV-1 glycoprotein gp140 immunogens and native HIV-1 envelope glycoproteins display the same closed and open quaternary molecular architecturesQ35105223
Role of immune mechanisms in induction of HIV-1 broadly neutralizing antibodiesQ35116581
Progress in the rational design of an AIDS vaccineQ35137125
Initial antibodies binding to HIV-1 gp41 in acutely infected subjects are polyreactive and highly mutatedQ35441583
Rational design of vaccines to elicit broadly neutralizing antibodies to HIV-1.Q35603504
Antibody mechanics on a membrane-bound HIV segment essential for GP41-targeted viral neutralizationQ35660279
Induction of mucosal and systemic neutralizing antibodies against human immunodeficiency virus type 1 (HIV-1) by oral immunization with bovine Papillomavirus-HIV-1 gp41 chimeric virus-like particlesQ35704086
Identifying epitopes of HIV-1 that induce protective antibodiesQ35708836
AIDSVAX VaxGen.Q35713970
Live attenuated HIV vaccines: pitfalls and prospectsQ35748470
V3: HIV's switch-hitterQ36051661
Antibody and HIV-1 gp120 recognition of CD4 undermines the concept of mimicry between antibodies and receptorsQ36250468
Human immunodeficiency virus type 1 neutralization is determined by epitope exposure on the gp120 oligomerQ36365085
Confronting complexity: real-world immunodominance in antiviral CD8+ T cell responsesQ36626160
Increase in soluble CD4 binding to and CD4-induced dissociation of gp120 from virions correlates with infectivity of human immunodeficiency virus type 1.Q36627098
Cross-neutralizing activity against divergent human immunodeficiency virus type 1 isolates induced by the gp41 sequence ELDKWAS.Q36634499
Identification of HIV Vaccine Candidate Peptides by Screening Random Phage Epitope LibrariesQ36695492
A glycoconjugate antigen based on the recognition motif of a broadly neutralizing human immunodeficiency virus antibody, 2G12, is immunogenic but elicits antibodies unable to bind to the self glycans of gp120Q36748055
Exploiting the defensive sugars of HIV-1 for drug and vaccine designQ36802333
Frequency and phenotype of human immunodeficiency virus envelope-specific B cells from patients with broadly cross-neutralizing antibodiesQ37033269
Factors associated with the development of cross-reactive neutralizing antibodies during human immunodeficiency virus type 1 infectionQ37033294
COBEpro: a novel system for predicting continuous B-cell epitopesQ37101584
Human immunodeficiency virus type 1 elite neutralizers: individuals with broad and potent neutralizing activity identified by using a high-throughput neutralization assay together with an analytical selection algorithmQ37247974
Characterization of the outer domain of the gp120 glycoprotein from human immunodeficiency virus type 1Q37596552
Evolutionary dynamics of the glycan shield of the human immunodeficiency virus envelope during natural infection and implications for exposure of the 2G12 epitopeQ37596817
Immunogenicity of HIV-1 envelope glycoprotein oligomersQ37667740
Challenges for structure-based HIV vaccine designQ37667763
The role of antibodies in HIV vaccinesQ37700725
Limitations to the structure‐based design of HIV‐1 vaccine immunogensQ37910841
Polyreactive antibodies in adaptive immune responses to virusesQ37951868
The effects of variable glycosylation on the functional activities of ribonuclease, plasminogen and tissue plasminogen activator.Q38296838
Expression, purification, and characterization of gp160e, the soluble, trimeric ectodomain of the simian immunodeficiency virus envelope glycoprotein, gp160.Q38309325
Neutralizing antibody directed against the HIV-1 envelope glycoprotein can completely block HIV-1/SIV chimeric virus infections of macaque monkeys.Q39457063
The N-terminal V3 loop glycan modulates the interaction of clade A and B human immunodeficiency virus type 1 envelopes with CD4 and chemokine receptorsQ39597685
The ability of an oligomeric human immunodeficiency virus type 1 (HIV-1) envelope antigen to elicit neutralizing antibodies against primary HIV-1 isolates is improved following partial deletion of the second hypervariable regionQ39602963
Role of complex carbohydrates in human immunodeficiency virus type 1 infection and resistance to antibody neutralizationQ39723388
Neutralization of the human immunodeficiency virus type 1 primary isolate JR-FL by human monoclonal antibodies correlates with antibody binding to the oligomeric form of the envelope glycoprotein complexQ39878965
Focused dampening of antibody response to the immunodominant variable loops by engineered soluble gp140.Q40011566
Differential loss of envelope glycoprotein gp120 from virions of human immunodeficiency virus type 1 isolates: effects on infectivity and neutralizationQ40059024
Immunogenicity of a chimeric hepatitis A virus (HAV) carrying the HIV gp41 epitope 2F5.Q40225027
The rational design of an AIDS vaccineQ40348550
Soluble mimetics of human immunodeficiency virus type 1 viral spikes produced by replacement of the native trimerization domain with a heterologous trimerization motif: characterization and ligand binding analysisQ40397998
Gp120 stability on HIV-1 virions and Gag-Env pseudovirions is enhanced by an uncleaved Gag core.Q40626990
Epitope insertion into variable loops of HIV-1 gp120 as a potential means to improve immunogenicity of viral envelope proteinQ40937092
Affinity Dependence of the B Cell Response to Antigen: A Threshold, a Ceiling, and the Importance of Off-RateQ41027647
Refocusing neutralizing antibody response by targeted dampening of an immunodominant epitope.Q41103077
The influence of virus structure on antibody responses and virus serotype formationQ41305357
Characterization of the multiple conformational States of free monomeric and trimeric human immunodeficiency virus envelope glycoproteins after fixation by cross-linkerQ41493875
Dissociation of gp120 from HIV-1 virions induced by soluble CD4.Q41714439
Immunogenicity of the outer domain of a HIV-1 clade C gp120.Q41961460
Induction of neutralizing antibody against human immunodeficiency virus type 1 (HIV-1) by immunization with gp41 membrane-proximal external region (MPER) fused with porcine endogenous retrovirus (PERV) p15E fragmentQ42039880
Polysaccharide mimicry of the epitope of the broadly neutralizing anti-HIV antibody, 2G12, induces enhanced antibody responses to self oligomannose glycansQ42265635
Structure-based, targeted deglycosylation of HIV-1 gp120 and effects on neutralization sensitivity and antibody recognition.Q44572417
Statistical analysis of the protein environment of N-glycosylation sites: implications for occupancy, structure, and folding.Q44599903
Immunofocusing: antigen engineering to promote the induction of HIV-neutralizing antibodiesQ44646864
Vaccinology: precisely tuned antibodies nab HIV.Q45138465
Improved design of an antigen with enhanced specificity for the broadly HIV-neutralizing antibody b12.Q45149860
A comparative immunogenicity study in rabbits of disulfide-stabilized, proteolytically cleaved, soluble trimeric human immunodeficiency virus type 1 gp140, trimeric cleavage-defective gp140 and monomeric gp120.Q45409784
Expression, purification, and characterization of recombinant HIV gp140. The gp41 ectodomain of HIV or simian immunodeficiency virus is sufficient to maintain the retroviral envelope glycoprotein as a trimerQ45736020
Immunization with envelope subunit vaccine products elicits neutralizing antibodies against laboratory-adapted but not primary isolates of human immunodeficiency virus type 1. The National Institute of Allergy and Infectious Diseases AIDS Vaccine EvQ45771982
Protection of macaques against vaginal SHIV challenge by systemic or mucosal and systemic vaccinations with HIV-envelopeQ46331384
A role for carbohydrates in immune evasion in AIDSQ47982875
What is a B-cell epitope?Q47983504
P921main subjectHIVQ15787
vaccine engineeringQ14861085
P304page(s)3
P577publication date2012-03-22
P1433published inJournal of AIDS & clinical researchQ27723591
P1476titleAntigenicity and Immunogenicity in HIV-1 Antibody-Based Vaccine Design
P478volumeS8

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