| scholarly article | Q13442814 |
| P2093 | author name string | Yi-Tao Yu | |
| Junhui Ge | |||
| P2860 | cites work | Nhp2p and Nop10p are essential for the function of H/ACA snoRNPs | Q22008508 |
| X-linked dyskeratosis congenita is caused by mutations in a highly conserved gene with putative nucleolar functions | Q24317067 | ||
| A human telomerase holoenzyme protein required for Cajal body localization and telomere synthesis | Q24323178 | ||
| The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs | Q24530279 | ||
| Nucleolar localization signals of box H/ACA small nucleolar RNAs | Q24534435 | ||
| A small nucleolar guide RNA functions both in 2'-O-ribose methylation and pseudouridylation of the U5 spliceosomal RNA | Q24536377 | ||
| A computational screen for mammalian pseudouridylation guide H/ACA RNAs | Q24537497 | ||
| A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture | Q24540031 | ||
| Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome | Q24563506 | ||
| Reconstitution of archaeal H/ACA small ribonucleoprotein complexes active in pseudouridylation | Q24810243 | ||
| Crystal structure determination and site-directed mutagenesis of the Pyrococcus abyssi aCBF5-aNOP10 complex reveal crucial roles of the C-terminal domains of both proteins in H/ACA sRNP activity | Q25257185 | ||
| Pseudouridines in spliceosomal snRNAs | Q26865050 | ||
| Sculpting of the spliceosomal branch site recognition motif by a conserved pseudouridine | Q27639938 | ||
| H/ACA small nucleolar RNA pseudouridylation pockets bind substrate RNA to form three-way junctions that position the target U for modification | Q27644371 | ||
| Solution structure of an rRNA substrate bound to the pseudouridylation pocket of a box H/ACA snoRNA | Q27644631 | ||
| Substrate RNA positioning in the archaeal H/ACA ribonucleoprotein complex | Q27649214 | ||
| X-ray Structures of U2 snRNA−Branchpoint Duplexes Containing Conserved Pseudouridines † ‡ | Q27650449 | ||
| Crystal structure of a translation termination complex formed with release factor RF2 | Q27653093 | ||
| Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA | Q27655679 | ||
| Structural mechanism of substrate RNA recruitment in H/ACA RNA-guided pseudouridine synthase | Q27655688 | ||
| Pseudouridylation (Psi) of U2 snRNA in S. cerevisiae is catalyzed by an RNA-independent mechanism | Q27934006 | ||
| The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase | Q27935785 | ||
| Accumulation of H/ACA snoRNPs depends on the integrity of the conserved central domain of the RNA-binding protein Nhp2p. | Q27936087 | ||
| Pseudouridylation of yeast U2 snRNA is catalyzed by either an RNA-guided or RNA-independent mechanism | Q27936751 | ||
| Pseudouridine mapping in the Saccharomyces cerevisiae spliceosomal U small nuclear RNAs (snRNAs) reveals that pseudouridine synthase pus1p exhibits a dual substrate specificity for U2 snRNA and tRNA. | Q27937578 | ||
| The Saccharomyces cerevisiae U2 snRNA:pseudouridine-synthase Pus7p is a novel multisite-multisubstrate RNA:Psi-synthase also acting on tRNAs | Q27938085 | ||
| Pseudouridine in RNA: what, where, how, and why | Q28141248 | ||
| RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse | Q28198621 | ||
| tRNA transfers to the limelight | Q28203809 | ||
| A conserved WD40 protein binds the Cajal body localization signal of scaRNP particles | Q28238122 | ||
| Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs | Q28240607 | ||
| The numerous modified nucleotides in eukaryotic ribosomal RNA | Q28263677 | ||
| The RNA Modification Database, RNAMDB: 2011 update | Q28298150 | ||
| rRNA modifications and ribosome function | Q28610126 | ||
| Compilation of tRNA sequences and sequences of tRNA genes | Q29615891 | ||
| The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions | Q29616485 | ||
| Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA | Q29618482 | ||
| Investigation of Overhauser effects between pseudouridine and water protons in RNA helices | Q30724468 | ||
| RNA-guided RNA modification: functional organization of the archaeal H/ACA RNP | Q33826941 | ||
| A small nucleolar RNP protein is required for pseudouridylation of eukaryotic ribosomal RNAs | Q33887226 | ||
| Elements essential for accumulation and function of small nucleolar RNAs directing site-specific pseudouridylation of ribosomal RNAs | Q33890338 | ||
| Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA | Q33959977 | ||
| Mutational analysis of pre-mRNA splicing in Saccharomyces cerevisiae using a sensitive new reporter gene, CUP1 | Q33960716 | ||
| MODOMICS: a database of RNA modification pathways. 2008 update | Q34014085 | ||
| A flexible RNA backbone within the polypyrimidine tract is required for U2AF65 binding and pre-mRNA splicing in vivo | Q34119811 | ||
| Incorporation of pseudouridine into mRNA enhances translation by diminishing PKR activation | Q34146278 | ||
| Pseudouridylation goes regulatory | Q34157560 | ||
| Functions and mechanisms of spliceosomal small nuclear RNA pseudouridylation | Q34169607 | ||
| Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center | Q34181714 | ||
| Converting nonsense codons into sense codons by targeted pseudouridylation | Q34192969 | ||
| An H/ACA guide RNA directs U2 pseudouridylation at two different sites in the branchpoint recognition region in Xenopus oocytes. | Q34364873 | ||
| Characterization of the catalytic activity of U2 and U6 snRNAs | Q34365232 | ||
| Pseudouridines in and near the branch site recognition region of U2 snRNA are required for snRNP biogenesis and pre-mRNA splicing in Xenopus oocytes | Q34365658 | ||
| U2 snRNA is inducibly pseudouridylated at novel sites by Pus7p and snR81 RNP. | Q34485772 | ||
| RNomics: identification and function of small, non-messenger RNAs | Q35019396 | ||
| rRNA pseudouridylation defects affect ribosomal ligand binding and translational fidelity from yeast to human cells. | Q35569577 | ||
| Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs | Q35741926 | ||
| Discovery of Pyrobaculum small RNA families with atypical pseudouridine guide RNA features | Q35775765 | ||
| Increased erythropoiesis in mice injected with submicrogram quantities of pseudouridine-containing mRNA encoding erythropoietin | Q35939486 | ||
| Box H and box ACA are nucleolar localization elements of U17 small nucleolar RNA. | Q36939903 | ||
| Functionality and substrate specificity of human box H/ACA guide RNAs | Q37034276 | ||
| Pathogenic NAP57 mutations decrease ribonucleoprotein assembly in dyskeratosis congenita | Q37411787 | ||
| Incorporation of pseudouridine into mRNA yields superior nonimmunogenic vector with increased translational capacity and biological stability | Q37416925 | ||
| Nucleotide modifications in three functionally important regions of the Saccharomyces cerevisiae ribosome affect translation accuracy | Q37477549 | ||
| The presence of pseudouridine in the anticodon alters the genetic code: a possible mechanism for assignment of the AAA lysine codon as asparagine in echinoderm mitochondria. | Q39727686 | ||
| A common sequence motif determines the Cajal body-specific localization of box H/ACA scaRNAs. | Q39831945 | ||
| Stabilization of RNA stacking by pseudouridine | Q40397122 | ||
| Ribosome performance is enhanced by a rich cluster of pseudouridines in the A-site finger region of the large subunit | Q40420065 | ||
| A snoRNA that guides the two most conserved pseudouridine modifications within rRNA confers a growth advantage in yeast. | Q41355883 | ||
| Rationalization and prediction of selective decoding of pseudouridine-modified nonsense and sense codons. | Q41509910 | ||
| A role for SUMOylation in snoRNP biogenesis revealed by quantitative proteomics | Q42180595 | ||
| Human intron-encoded Alu RNAs are processed and packaged into Wdr79-associated nucleoplasmic box H/ACA RNPs. | Q42323459 | ||
| The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs. | Q42486419 | ||
| Loss of rRNA modifications in the decoding center of the ribosome impairs translation and strongly delays pre-rRNA processing | Q42554055 | ||
| Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing | Q42656253 | ||
| Psi35 in the branch site recognition region of U2 small nuclear RNA is important for pre-mRNA splicing in Saccharomyces cerevisiae | Q45195748 | ||
| Crystal structure of a Cbf5-Nop10-Gar1 complex and implications in RNA-guided pseudouridylation and dyskeratosis congenita. | Q46904259 | ||
| Increased urinary level of oxidized nucleosides in patients with mild-to-moderate Alzheimer's disease. | Q53388119 | ||
| Crystal structure of an H/ACA box ribonucleoprotein particle. | Q53589609 | ||
| Posttranscriptionally modified nucleosides in transfer RNA: their locations and frequencies | Q71699636 | ||
| More Sm snRNAs from vertebrate cells | Q71952622 | ||
| Crystal structure of unmodified tRNA(Gln) complexed with glutaminyl-tRNA synthetase and ATP suggests a possible role for pseudo-uridines in stabilization of RNA structure | Q72015576 | ||
| Ribonucleic acids from yeast which contain a fifth nucleotide | Q74610888 | ||
| rRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity | Q80407834 | ||
| P433 | issue | 4 | |
| P1104 | number of pages | 9 | |
| P304 | page(s) | 210-218 | |
| P577 | publication date | 2013-02-04 | |
| P1433 | published in | Trends in Biochemical Sciences | Q1565711 |
| P1476 | title | RNA pseudouridylation: new insights into an old modification | |
| P478 | volume | 38 |
| Q35027409 | 28S rRNA is inducibly pseudouridylated by the mTOR pathway translational control in CHO cell cultures |
| Q39950545 | A mass spectrometry-based method for direct determination of pseudouridine in RNA. |
| Q40474588 | A pseudouridine residue in the spliceosome core is part of the filamentous growth program in yeast. |
| Q64906880 | Above the Epitranscriptome: RNA Modifications and Stem Cell Identity. |
| Q41924180 | An expanding universe of mRNA modifications |
| Q39170998 | Antibodies specific for nucleic acid modifications |
| Q47099790 | Biogenesis and iron-dependency of ribosomal RNA hydroxylation |
| Q50295887 | Box H/ACA snoRNP transforms uridine to pseudouridine in pre-rRNA |
| Q34480727 | Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome. |
| Q91174418 | Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair |
| Q58740592 | Contribution of protein Gar1 to the RNA-guided and RNA-independent rRNA:Ψ-synthase activities of the archaeal Cbf5 protein |
| Q28247103 | Cotranscriptional events in eukaryotic ribosome synthesis |
| Q55093220 | DNA methylation alterations in Alzheimer's disease. |
| Q37391796 | Deciphering the epitranscriptome: A green perspective. |
| Q63681745 | Detection and analysis of RNA methylation |
| Q90437908 | Development and validation of monoclonal antibodies against N6-methyladenosine for the detection of RNA modifications |
| Q35084203 | Differential proteomics of Helicobacter pylori associated with autoimmune atrophic gastritis |
| Q91826895 | Differential roles of human PUS10 in miRNA processing and tRNA pseudouridylation |
| Q47362852 | Efficient RNA pseudouridylation by eukaryotic H/ACA ribonucleoproteins requires high affinity binding and correct positioning of guide RNA. |
| Q64107829 | Emerging Role of Eukaryote Ribosomes in Translational Control |
| Q61814999 | Epitranscriptomic Signatures in lncRNAs and Their Possible Roles in Cancer |
| Q37347057 | Evolving insights into RNA modifications and their functional diversity in the brain |
| Q46862663 | Experience-dependent neural plasticity, learning, and memory in the era of epitranscriptomics. |
| Q38164814 | Functional implications of ribosomal RNA methylation in response to environmental stress. |
| Q35842203 | GSE4, a Small Dyskerin- and GSE24.2-Related Peptide, Induces Telomerase Activity, Cell Proliferation and Reduces DNA Damage, Oxidative Stress and Cell Senescence in Dyskerin Mutant Cells |
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| Q47271402 | Glucose-induced trophic shift in an endosymbiont dinoflagellate with physiological and molecular consequences |
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| Q89168645 | How Messenger RNA and Nascent Chain Sequences Regulate Translation Elongation |
| Q35852523 | Immuno-Northern Blotting: Detection of RNA Modifications by Using Antibodies against Modified Nucleosides. |
| Q34045007 | Influence of Sequence and Covalent Modifications on Yeast tRNA Dynamics |
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| Q90745788 | PIANO: A Web Server for Pseudouridine-Site (Ψ) Identification and Functional Annotation |
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| Q47161392 | Posttranscriptional RNA Pseudouridylation |
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| Q58696200 | PseUI: Pseudouridine sites identification based on RNA sequence information |
| Q45967000 | Pseudouridine and N6-methyladenosine modifications weaken PUF protein/RNA interactions. |
| Q43167003 | Pseudouridine in a new era of RNA modifications |
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| Q92303583 | Pseudouridine synthase 7 impacts Candida albicans rRNA processing and morphological plasticity |
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| Q46268612 | RNA Pseudouridylation in Physiology and Medicine: For Better and for Worse |
| Q36189576 | RNA-guided isomerization of uridine to pseudouridine--pseudouridylation |
| Q55083143 | Recent Advances in Identification of RNA Modifications. |
| Q40663030 | Revisiting the structure/function relationships of H/ACA(-like) RNAs: a unified model for Euryarchaea and Crenarchaea |
| Q47914406 | Role of RNA Modifications in Brain and Behavior. |
| Q42572198 | Role of forefinger and thumb loops in production of Ψ54 and Ψ55 in tRNAs by archaeal Pus10. |
| Q35070044 | Structure and interactions of the CS domain of human H/ACA RNP assembly protein Shq1. |
| Q30391986 | Structure-function relationships of archaeal Cbf5 during in vivo RNA-guided pseudouridylation |
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| Q39188703 | The Epitranscriptome of Noncoding RNAs in Cancer. |
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| Q27935154 | The TOR signaling pathway regulates starvation-induced pseudouridylation of yeast U2 snRNA. |
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