High-Throughput Sequencing Reveals Single Nucleotide Variants in Longer-Kernel Bread Wheat

scientific article published on 08 August 2016

High-Throughput Sequencing Reveals Single Nucleotide Variants in Longer-Kernel Bread Wheat is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.3389/FPLS.2016.01193
P932PMC publication ID4976665
P698PubMed publication ID27551288

P2093author name stringFeng Chen
Yan Yan
Dangqun Cui
Zhongdong Dong
Xiaobian Zhou
Zibo Zhu
P2860cites workComparing de novo assemblers for 454 transcriptome dataQ21267209
BLAST+: architecture and applicationsQ21284368
A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)Q22065834
Draft genome of the wheat A-genome progenitor Triticum urartuQ22122138
Analysis of the bread wheat genome using whole-genome shotgun sequencingQ22122152
RNA-Seq: a revolutionary tool for transcriptomicsQ24596169
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arraysQ24655562
Exploring the role of protein phosphorylation in plants: from signalling to metabolismQ36703017
Next-generation survey sequencing and the molecular organization of wheat chromosome 6B.Q37707236
The role of metals in production and scavenging of reactive oxygen species in photosystem II.Q38207558
The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in riceQ38873090
Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivarsQ41834326
GC-biased gene conversion and selection affect GC content in the Oryza genus (rice).Q42598099
Natural variation in GS5 plays an important role in regulating grain size and yield in riceQ42621565
GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane proteinQ42679495
Activation of plant immune responses by a gain-of-function mutation in an atypical receptor-like kinaseQ43052203
The distribution of genes in the human genomeQ43493491
Phosphorylation-mediated regulation of a rice ABA responsive element binding factorQ43638558
Mutational bias affects protein evolution in flowering plantsQ44640575
Phytochrome-specific type 5 phosphatase controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer.Q45262715
Creation and functional analysis of new Puroindoline alleles in Triticum aestivumQ46322305
Genome interplay in the grain transcriptome of hexaploid bread wheatQ46411478
Identification of homologous, homoeologous and paralogous sequence variants in an outbreeding allopolyploid species based on comparison with progenitor taxaQ46425344
Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weightQ47206865
A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligaseQ47293573
Control of grain size, shape and quality by OsSPL16 in riceQ47302056
Control of rice grain-filling and yield by a gene with a potential signature of domesticationQ48072921
DNA sequence quality trimming and vector removal.Q48654495
TaGS-D1, an ortholog of rice OsGS3, is associated with grain weight and grain length in common wheatQ57916517
The Glycerophosphoryl Diester Phosphodiesterase-Like Proteins SHV3 and its Homologs Play Important Roles in Cell Wall OrganizationQ63640846
The evolution of isochoresQ28204369
Analysis of main effect QTL for thousand grain weight in European winter wheat (Triticum aestivum L.) by genome-wide association mappingQ28608255
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genomeQ29029314
A rule for termination-codon position within intron-containing genes: when nonsense affects RNA abundanceQ29615731
Genome-wide prediction of cancer driver genes based on SNP and cancer SNV dataQ30838341
High guanine and cytosine content increases mRNA levels in mammalian cellsQ33243412
Discovery of chemically induced mutations in rice by TILLING.Q33281829
The impact of recombination on nucleotide substitutions in the human genomeQ33332585
Transcriptome analysis of rice mature root tissue and root tips in early development by massive parallel sequencing.Q33352782
A modified TILLING approach to detect induced mutations in tetraploid and hexaploid wheatQ33497643
Highly-multiplexed SNP genotyping for genetic mapping and germplasm diversity studies in pea.Q33654691
CD-HIT Suite: a web server for clustering and comparing biological sequencesQ33686347
Discovery of rare mutations in populations: TILLING by sequencingQ33885544
Targeting induced local lesions IN genomes (TILLING) for plant functional genomicsQ33906162
Analysis of stop-gain and frameshift variants in human innate immunity genesQ33946297
Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores.Q34058724
Reference genome-independent assessment of mutation density using restriction enzyme-phased sequencing.Q34158643
Development of high amylose wheat through TILLING.Q34268473
Linking differential domain functions of the GS3 protein to natural variation of grain size in riceQ34320667
Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq dataQ34379264
Transcriptome-scale homoeolog-specific transcript assemblies of bread wheat.Q34417744
Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew.Q34429769
Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis.Q34617887
WheatQ34977252
SNP marker discovery, linkage map construction and identification of QTLs for enhanced salinity tolerance in field pea (Pisum sativum L.).Q35019656
Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genomeQ35164562
High-density genetic linkage map construction and QTL mapping of grain shape and size in the wheat population Yanda1817 × Beinong6Q35559931
TILLING. Traditional mutagenesis meets functional genomics.Q35779583
Identification of a Novel Allele of TaCKX6a02 Associated with Grain Size, Filling Rate and Weight of Common WheatQ35866564
Serine/threonine protein phosphatase 5 (PP5) interacts with substrate under heat stress conditions and forms protein complex in ArabidopsisQ36164053
High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum L.).Q36323655
P921main subjectbreadQ7802
wheatQ15645384
high-throughput sequencingQ112147935
P304page(s)1193
P577publication date2016-08-08
P1433published inFrontiers in Plant ScienceQ27723840
P1476titleHigh-Throughput Sequencing Reveals Single Nucleotide Variants in Longer-Kernel Bread Wheat
P478volume7

Reverse relations

cites work (P2860)
Q92604354Development and characterization of an EMS-mutagenized wheat population and identification of salt-tolerant wheat lines
Q58801508Genome-Wide Association Studies to Identify Loci and Candidate Genes Controlling Kernel Weight and Length in a Historical United States Wheat Population

Search more.